data_7QY3 # _model_server_result.job_id B0RIQv2qERymjjkZ222Fsw _model_server_result.datetime_utc '2024-11-26 17:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":301}' # _entry.id 7QY3 # _exptl.entry_id 7QY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione)" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QY3 _cell.length_a 195.08 _cell.length_b 195.08 _cell.length_c 195.064 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 ? tetrameric 4 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,UA,VA,WA,XA 1 1 E,F,AA,BA,CA,DA,EA,FA,GA,HA,YA,ZA 2 1,2 G,H,IA,JA,KA,LA,MA,NA,AB,BB 3 1,2 I,J,OA,PA,QA,RA,SA,TA,CB,DB 4 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -65.021333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 Q N N ? 2 EA N N ? 2 LA N N ? 2 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 134 A CYS 114 1_555 K CAH ME7 . A ME7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 K CAE ME7 . A ME7 301 2_565 C SG CYS 134 C CYS 114 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.766 ? covale ? covale3 B SG CYS 134 B CYS 114 1_555 Q CAH ME7 . B ME7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 F SG CYS 134 F CYS 114 1_555 EA OAD ME7 . F ME7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale5 EA CAF ME7 . F ME7 301 1_555 G SG CYS 134 G CYS 114 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.767 ? covale ? covale6 H SG CYS 134 H CYS 114 1_555 LA CAE ME7 . H ME7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? # _chem_comp.formula 'C10 H8 N2 O4' _chem_comp.formula_weight 220.182 _chem_comp.id ME7 _chem_comp.mon_nstd_flag . _chem_comp.name "1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAK ME7 doub 218 n n OAB CAL ME7 doub 219 n n OAC CAM ME7 doub 220 n n CAN OAD ME7 doub 221 n n CAK CAE ME7 sing 222 n n CAE CAF ME7 doub 223 n n CAE HAE ME7 sing 224 n n CAL CAF ME7 sing 225 n n CAF HAF ME7 sing 226 n n CAG CAH ME7 doub 227 n n CAG CAM ME7 sing 228 n n CAG HAG ME7 sing 229 n n CAH CAN ME7 sing 230 n n CAH HAH ME7 sing 231 n n CAJ CAI ME7 sing 232 n n CAI NAO ME7 sing 233 n n CAI HAI ME7 sing 234 n n CAI HAIA ME7 sing 235 n n NAP CAJ ME7 sing 236 n n CAJ HAJ ME7 sing 237 n n CAJ HAJA ME7 sing 238 n n NAO CAK ME7 sing 239 n n NAO CAL ME7 sing 240 n n CAM NAP ME7 sing 241 n n CAN NAP ME7 sing 242 n n # _atom_sites.entry_id 7QY3 _atom_sites.fract_transf_matrix[1][1] 0.005126 _atom_sites.fract_transf_matrix[1][2] 0.00296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 ME7 A 1 301 301 ME7 ME7 . L 3 SO4 A 1 302 1 SO4 SO4 . M 3 SO4 A 1 303 3 SO4 SO4 . N 3 SO4 A 1 304 4 SO4 SO4 . O 3 SO4 A 1 305 29 SO4 SO4 . P 3 SO4 A 1 306 34 SO4 SO4 . Q 2 ME7 B 1 301 301 ME7 ME7 . R 3 SO4 B 1 302 5 SO4 SO4 . S 3 SO4 B 1 303 6 SO4 SO4 . T 3 SO4 B 1 304 7 SO4 SO4 . U 3 SO4 C 1 301 8 SO4 SO4 . V 3 SO4 C 1 302 27 SO4 SO4 . W 3 SO4 C 1 303 31 SO4 SO4 . X 3 SO4 D 1 301 9 SO4 SO4 . Y 3 SO4 D 1 302 10 SO4 SO4 . Z 3 SO4 D 1 303 11 SO4 SO4 . AA 3 SO4 E 1 301 12 SO4 SO4 . BA 3 SO4 E 1 302 13 SO4 SO4 . CA 3 SO4 E 1 303 14 SO4 SO4 . DA 3 SO4 E 1 304 30 SO4 SO4 . EA 2 ME7 F 1 301 301 ME7 ME7 . FA 3 SO4 F 1 302 15 SO4 SO4 . GA 3 SO4 F 1 303 16 SO4 SO4 . HA 3 SO4 F 1 304 17 SO4 SO4 . IA 3 SO4 G 1 301 18 SO4 SO4 . JA 3 SO4 G 1 302 19 SO4 SO4 . KA 3 SO4 G 1 303 28 SO4 SO4 . LA 2 ME7 H 1 301 301 ME7 ME7 . MA 3 SO4 H 1 302 21 SO4 SO4 . NA 3 SO4 H 1 303 32 SO4 SO4 . OA 2 ME7 I 1 301 301 ME7 ME7 . PA 3 SO4 I 1 302 22 SO4 SO4 . QA 3 SO4 I 1 303 23 SO4 SO4 . RA 3 SO4 I 1 304 24 SO4 SO4 . SA 3 SO4 J 1 301 26 SO4 SO4 . TA 3 SO4 J 1 302 33 SO4 SO4 . UA 4 HOH A 1 401 50 HOH HOH . UA 4 HOH A 2 402 70 HOH HOH . UA 4 HOH A 3 403 165 HOH HOH . UA 4 HOH A 4 404 213 HOH HOH . UA 4 HOH A 5 405 175 HOH HOH . UA 4 HOH A 6 406 115 HOH HOH . UA 4 HOH A 7 407 209 HOH HOH . UA 4 HOH A 8 408 48 HOH HOH . UA 4 HOH A 9 409 102 HOH HOH . UA 4 HOH A 10 410 111 HOH HOH . UA 4 HOH A 11 411 142 HOH HOH . UA 4 HOH A 12 412 192 HOH HOH . UA 4 HOH A 13 413 207 HOH HOH . UA 4 HOH A 14 414 14 HOH HOH . UA 4 HOH A 15 415 9 HOH HOH . UA 4 HOH A 16 416 146 HOH HOH . UA 4 HOH A 17 417 154 HOH HOH . UA 4 HOH A 18 418 71 HOH HOH . UA 4 HOH A 19 419 118 HOH HOH . UA 4 HOH A 20 420 135 HOH HOH . UA 4 HOH A 21 421 183 HOH HOH . UA 4 HOH A 22 422 51 HOH HOH . UA 4 HOH A 23 423 180 HOH HOH . UA 4 HOH A 24 424 133 HOH HOH . UA 4 HOH A 25 425 131 HOH HOH . UA 4 HOH A 26 426 101 HOH HOH . UA 4 HOH A 27 427 152 HOH HOH . UA 4 HOH A 28 428 61 HOH HOH . UA 4 HOH A 29 429 199 HOH HOH . VA 4 HOH B 1 401 17 HOH HOH . VA 4 HOH B 2 402 78 HOH HOH . VA 4 HOH B 3 403 186 HOH HOH . VA 4 HOH B 4 404 84 HOH HOH . VA 4 HOH B 5 405 85 HOH HOH . VA 4 HOH B 6 406 106 HOH HOH . VA 4 HOH B 7 407 110 HOH HOH . VA 4 HOH B 8 408 162 HOH HOH . VA 4 HOH B 9 409 2 HOH HOH . VA 4 HOH B 10 410 62 HOH HOH . VA 4 HOH B 11 411 83 HOH HOH . VA 4 HOH B 12 412 92 HOH HOH . VA 4 HOH B 13 413 171 HOH HOH . VA 4 HOH B 14 414 89 HOH HOH . VA 4 HOH B 15 415 161 HOH HOH . VA 4 HOH B 16 416 27 HOH HOH . VA 4 HOH B 17 417 143 HOH HOH . VA 4 HOH B 18 418 144 HOH HOH . VA 4 HOH B 19 419 113 HOH HOH . WA 4 HOH C 1 401 114 HOH HOH . WA 4 HOH C 2 402 157 HOH HOH . WA 4 HOH C 3 403 211 HOH HOH . WA 4 HOH C 4 404 184 HOH HOH . WA 4 HOH C 5 405 73 HOH HOH . WA 4 HOH C 6 406 172 HOH HOH . WA 4 HOH C 7 407 108 HOH HOH . WA 4 HOH C 8 408 105 HOH HOH . WA 4 HOH C 9 409 129 HOH HOH . WA 4 HOH C 10 410 30 HOH HOH . WA 4 HOH C 11 411 167 HOH HOH . WA 4 HOH C 12 412 125 HOH HOH . WA 4 HOH C 13 413 49 HOH HOH . XA 4 HOH D 1 401 128 HOH HOH . XA 4 HOH D 2 402 11 HOH HOH . XA 4 HOH D 3 403 72 HOH HOH . XA 4 HOH D 4 404 29 HOH HOH . XA 4 HOH D 5 405 87 HOH HOH . XA 4 HOH D 6 406 67 HOH HOH . XA 4 HOH D 7 407 189 HOH HOH . XA 4 HOH D 8 408 65 HOH HOH . XA 4 HOH D 9 409 44 HOH HOH . XA 4 HOH D 10 410 63 HOH HOH . XA 4 HOH D 11 411 69 HOH HOH . XA 4 HOH D 12 412 150 HOH HOH . XA 4 HOH D 13 413 13 HOH HOH . XA 4 HOH D 14 414 59 HOH HOH . XA 4 HOH D 15 415 109 HOH HOH . XA 4 HOH D 16 416 98 HOH HOH . XA 4 HOH D 17 417 156 HOH HOH . XA 4 HOH D 18 418 201 HOH HOH . XA 4 HOH D 19 419 1 HOH HOH . XA 4 HOH D 20 420 160 HOH HOH . XA 4 HOH D 21 421 24 HOH HOH . YA 4 HOH E 1 401 173 HOH HOH . YA 4 HOH E 2 402 10 HOH HOH . YA 4 HOH E 3 403 188 HOH HOH . YA 4 HOH E 4 404 194 HOH HOH . YA 4 HOH E 5 405 82 HOH HOH . YA 4 HOH E 6 406 7 HOH HOH . YA 4 HOH E 7 407 81 HOH HOH . YA 4 HOH E 8 408 97 HOH HOH . YA 4 HOH E 9 409 122 HOH HOH . YA 4 HOH E 10 410 57 HOH HOH . YA 4 HOH E 11 411 22 HOH HOH . YA 4 HOH E 12 412 66 HOH HOH . YA 4 HOH E 13 413 187 HOH HOH . YA 4 HOH E 14 414 169 HOH HOH . YA 4 HOH E 15 415 164 HOH HOH . YA 4 HOH E 16 416 34 HOH HOH . YA 4 HOH E 17 417 12 HOH HOH . YA 4 HOH E 18 418 91 HOH HOH . YA 4 HOH E 19 419 112 HOH HOH . YA 4 HOH E 20 420 116 HOH HOH . YA 4 HOH E 21 421 43 HOH HOH . YA 4 HOH E 22 422 47 HOH HOH . YA 4 HOH E 23 423 140 HOH HOH . YA 4 HOH E 24 424 16 HOH HOH . YA 4 HOH E 25 425 15 HOH HOH . ZA 4 HOH F 1 401 126 HOH HOH . ZA 4 HOH F 2 402 18 HOH HOH . ZA 4 HOH F 3 403 79 HOH HOH . ZA 4 HOH F 4 404 3 HOH HOH . ZA 4 HOH F 5 405 120 HOH HOH . ZA 4 HOH F 6 406 168 HOH HOH . ZA 4 HOH F 7 407 193 HOH HOH . ZA 4 HOH F 8 408 23 HOH HOH . ZA 4 HOH F 9 409 39 HOH HOH . ZA 4 HOH F 10 410 86 HOH HOH . ZA 4 HOH F 11 411 104 HOH HOH . ZA 4 HOH F 12 412 26 HOH HOH . ZA 4 HOH F 13 413 179 HOH HOH . ZA 4 HOH F 14 414 4 HOH HOH . ZA 4 HOH F 15 415 52 HOH HOH . ZA 4 HOH F 16 416 148 HOH HOH . ZA 4 HOH F 17 417 90 HOH HOH . ZA 4 HOH F 18 418 198 HOH HOH . ZA 4 HOH F 19 419 136 HOH HOH . ZA 4 HOH F 20 420 170 HOH HOH . ZA 4 HOH F 21 421 95 HOH HOH . ZA 4 HOH F 22 422 76 HOH HOH . ZA 4 HOH F 23 423 99 HOH HOH . ZA 4 HOH F 24 424 88 HOH HOH . ZA 4 HOH F 25 425 202 HOH HOH . ZA 4 HOH F 26 426 6 HOH HOH . ZA 4 HOH F 27 427 53 HOH HOH . ZA 4 HOH F 28 428 28 HOH HOH . ZA 4 HOH F 29 429 60 HOH HOH . AB 4 HOH G 1 401 58 HOH HOH . AB 4 HOH G 2 402 80 HOH HOH . AB 4 HOH G 3 403 138 HOH HOH . AB 4 HOH G 4 404 103 HOH HOH . AB 4 HOH G 5 405 74 HOH HOH . BB 4 HOH H 1 401 21 HOH HOH . BB 4 HOH H 2 402 117 HOH HOH . CB 4 HOH I 1 401 68 HOH HOH . CB 4 HOH I 2 402 40 HOH HOH . CB 4 HOH I 3 403 176 HOH HOH . CB 4 HOH I 4 404 56 HOH HOH . CB 4 HOH I 5 405 200 HOH HOH . CB 4 HOH I 6 406 96 HOH HOH . CB 4 HOH I 7 407 93 HOH HOH . CB 4 HOH I 8 408 196 HOH HOH . CB 4 HOH I 9 409 94 HOH HOH . CB 4 HOH I 10 410 145 HOH HOH . DB 4 HOH J 1 401 204 HOH HOH . DB 4 HOH J 2 402 147 HOH HOH . DB 4 HOH J 3 403 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ME7 . . . LA 2 2.937 0.154 -42.054 1 107.99 ? OAA ME7 301 H 1 HETATM 2 O OAB ME7 . . . LA 2 -0.248 0.443 -38.751 1 103.64 ? OAB ME7 301 H 1 HETATM 3 O OAC ME7 . . . LA 2 1.904 2.959 -39.352 1 118.55 ? OAC ME7 301 H 1 HETATM 4 O OAD ME7 . . . LA 2 5.567 1.018 -37.374 1 116.67 ? OAD ME7 301 H 1 HETATM 5 C CAE ME7 . . . LA 2 0.645 1.003 -42.073 1 90.18 ? CAE ME7 301 H 1 HETATM 6 C CAF ME7 . . . LA 2 -0.284 1.087 -41.108 1 92.99 ? CAF ME7 301 H 1 HETATM 7 C CAG ME7 . . . LA 2 4.178 3.773 -38.989 1 105.94 ? CAG ME7 301 H 1 HETATM 8 C CAH ME7 . . . LA 2 5.246 3.208 -38.408 1 106.35 ? CAH ME7 301 H 1 HETATM 9 C CAI ME7 . . . LA 2 2.542 -0.41 -39.19 1 105.61 ? CAI ME7 301 H 1 HETATM 10 C CAJ ME7 . . . LA 2 2.733 0.488 -37.974 1 112.89 ? CAJ ME7 301 H 1 HETATM 11 C CAK ME7 . . . LA 2 1.871 0.408 -41.497 1 108.64 ? CAK ME7 301 H 1 HETATM 12 C CAL ME7 . . . LA 2 0.287 0.551 -39.854 1 106.64 ? CAL ME7 301 H 1 HETATM 13 C CAM ME7 . . . LA 2 3.05 2.819 -38.932 1 114.47 ? CAM ME7 301 H 1 HETATM 14 C CAN ME7 . . . LA 2 4.871 1.855 -37.945 1 113.83 ? CAN ME7 301 H 1 HETATM 15 N NAO ME7 . . . LA 2 1.594 0.163 -40.153 1 112.68 ? NAO ME7 301 H 1 HETATM 16 N NAP ME7 . . . LA 2 3.531 1.68 -38.286 1 117.31 ? NAP ME7 301 H 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #