data_7QY7
#
_model_server_result.job_id            yj0rJiHHNP1Lp7ElLxihow 
_model_server_result.datetime_utc      '2024-11-05 03:52:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qy7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":501}' 
#
_entry.id    7QY7 
#
_exptl.entry_id    7QY7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          34 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QY7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    46-meric 
_pdbx_struct_assembly.oligomeric_count      46 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 34 VA N N 
? 34 WA N N 
? 34 XA N N 
? 34 YA N N 
? 34 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 Y SG CYS 41 M CYS 41 1_555 Y SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 MA SG CYS 41 m CYS 41 1_555 MA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 P CB ARG 323 D ARG 323 1_555 XA O2G ATP . D ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
covale ? covale2 Q N GLY 191 E GLY 177 1_555 ZA O2G ATP . E ATP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
metalc ? metalc1 C N SER 113 c SER 114 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc2 C O SER 113 c SER 114 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7QY7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
UA 33 ZN c 1 401 401 ZN ZN . 
VA 34 ATP A 1 501 501 ATP ATP . 
WA 34 ATP B 1 501 501 ATP ATP . 
XA 34 ATP D 1 501 407 ATP ATP . 
YA 34 ATP D 1 502 501 ATP ATP . 
ZA 34 ATP E 1 401 407 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . XA 34 258.901 231.284 233.35 1 109.36 ? PG ATP 501 D 1 
HETATM 2 O O1G ATP . . . XA 34 258.269 229.944 233.6 1 109.36 ? O1G ATP 501 D 1 
HETATM 3 O O2G ATP . . . XA 34 258.005 232.25 232.625 1 109.36 ? O2G ATP 501 D 1 
HETATM 4 O O3G ATP . . . XA 34 260.324 231.271 232.859 1 109.36 ? O3G ATP 501 D 1 
HETATM 5 P PB ATP . . . XA 34 259.173 231.126 236.168 1 109.36 ? PB ATP 501 D 1 
HETATM 6 O O1B ATP . . . XA 34 257.872 231.219 236.91 1 109.36 ? O1B ATP 501 D 1 
HETATM 7 O O2B ATP . . . XA 34 259.883 229.819 235.94 1 109.36 ? O2B ATP 501 D 1 
HETATM 8 O O3B ATP . . . XA 34 259.052 231.94 234.799 1 109.36 ? O3B ATP 501 D 1 
HETATM 9 P PA ATP . . . XA 34 260.849 231.297 238.233 1 109.36 ? PA ATP 501 D 1 
HETATM 10 O O1A ATP . . . XA 34 259.834 230.333 238.783 1 109.36 ? O1A ATP 501 D 1 
HETATM 11 O O2A ATP . . . XA 34 262.17 230.805 237.713 1 109.36 ? O2A ATP 501 D 1 
HETATM 12 O O3A ATP . . . XA 34 260.139 232.055 237.027 1 109.36 ? O3A ATP 501 D 1 
HETATM 13 O O5' ATP . . . XA 34 261.137 232.442 239.31 1 109.36 ? O5' ATP 501 D 1 
HETATM 14 C C5' ATP . . . XA 34 262.165 233.375 239.013 1 109.36 ? C5' ATP 501 D 1 
HETATM 15 C C4' ATP . . . XA 34 262.452 234.201 240.25 1 109.36 ? C4' ATP 501 D 1 
HETATM 16 O O4' ATP . . . XA 34 261.238 234.784 240.713 1 109.36 ? O4' ATP 501 D 1 
HETATM 17 C C3' ATP . . . XA 34 262.995 233.335 241.366 1 109.36 ? C3' ATP 501 D 1 
HETATM 18 O O3' ATP . . . XA 34 264.313 233.756 241.702 1 109.36 ? O3' ATP 501 D 1 
HETATM 19 C C2' ATP . . . XA 34 262.102 233.611 242.546 1 109.36 ? C2' ATP 501 D 1 
HETATM 20 O O2' ATP . . . XA 34 262.87 234.008 243.678 1 109.36 ? O2' ATP 501 D 1 
HETATM 21 C C1' ATP . . . XA 34 261.146 234.701 242.129 1 109.36 ? C1' ATP 501 D 1 
HETATM 22 N N9 ATP . . . XA 34 259.762 234.321 242.444 1 109.36 ? N9 ATP 501 D 1 
HETATM 23 C C8 ATP . . . XA 34 258.787 234.262 241.531 1 109.36 ? C8 ATP 501 D 1 
HETATM 24 N N7 ATP . . . XA 34 257.617 233.897 242.096 1 109.36 ? N7 ATP 501 D 1 
HETATM 25 C C5 ATP . . . XA 34 257.848 233.725 243.402 1 109.36 ? C5 ATP 501 D 1 
HETATM 26 C C6 ATP . . . XA 34 257.041 233.338 244.561 1 109.36 ? C6 ATP 501 D 1 
HETATM 27 N N6 ATP . . . XA 34 255.728 233.066 244.437 1 109.36 ? N6 ATP 501 D 1 
HETATM 28 N N1 ATP . . . XA 34 257.651 233.275 245.75 1 109.36 ? N1 ATP 501 D 1 
HETATM 29 C C2 ATP . . . XA 34 258.952 233.545 245.899 1 109.36 ? C2 ATP 501 D 1 
HETATM 30 N N3 ATP . . . XA 34 259.746 233.903 244.886 1 109.36 ? N3 ATP 501 D 1 
HETATM 31 C C4 ATP . . . XA 34 259.263 234.009 243.633 1 109.36 ? C4 ATP 501 D 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    226 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#