data_7QYS # _model_server_result.job_id bnebcPu3w9HspWR-Bvm72Q _model_server_result.datetime_utc '2024-10-19 08:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":401}' # _entry.id 7QYS # _exptl.entry_id 7QYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.94 _cell.angle_beta 84.37 _cell.angle_gamma 89.97 _cell.entry_id 7QYS _cell.length_a 95.905 _cell.length_b 96.091 _cell.length_c 156.992 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,Q,R,S,T 1 1 E,F,G,H,U,V,W 2 1 I,J,K,L,X,Y 3 1 M,N,O,P,Z,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7QYS _atom_sites.fract_transf_matrix[1][1] 0.010427 _atom_sites.fract_transf_matrix[1][2] -0.000005 _atom_sites.fract_transf_matrix[1][3] -0.001028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010407 _atom_sites.fract_transf_matrix[2][3] -0.000193 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ADP A 1 401 301 ADP ADP . R 2 ADP B 1 401 301 ADP ADP . S 2 ADP C 1 401 301 ADP ADP . T 2 ADP D 1 401 301 ADP ADP . U 2 ADP E 1 401 301 ADP ADP . V 2 ADP G 1 401 301 ADP ADP . W 2 ADP H 1 401 301 ADP ADP . X 2 ADP J 1 401 301 ADP ADP . Y 2 ADP K 1 401 301 ADP ADP . Z 2 ADP M 1 401 301 ADP ADP . AA 2 ADP O 1 401 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Q 2 -46.366 -20.135 -19.117 0.7 84.89 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . Q 2 -45.524 -19.925 -20.354 0.7 82.57 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . Q 2 -46.621 -21.594 -18.825 0.7 82.71 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . Q 2 -45.837 -19.383 -17.919 0.7 83.65 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . Q 2 -48.653 -19.243 -20.765 0.7 87.5 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . Q 2 -47.753 -19.464 -21.937 0.7 87.65 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . Q 2 -49.92 -20.032 -20.692 0.7 85.47 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . Q 2 -47.814 -19.488 -19.42 0.7 85.58 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . Q 2 -48.993 -17.678 -20.638 0.7 85.55 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . Q 2 -48.808 -16.831 -21.804 0.7 83.3 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . Q 2 -49.694 -15.611 -21.714 0.7 82.18 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . Q 2 -50.781 -15.726 -22.668 0.7 82.1 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . Q 2 -50.421 -15.349 -20.391 0.7 81.75 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . Q 2 -49.573 -14.797 -19.391 0.7 82 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . Q 2 -51.489 -14.363 -20.87 0.7 81.43 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . Q 2 -50.999 -13.053 -21.061 0.7 82.3 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . Q 2 -51.895 -14.99 -22.204 0.7 80.19 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . Q 2 -53.05 -15.874 -22.083 0.7 77.13 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . Q 2 -53.053 -17.231 -21.875 0.7 75.06 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . Q 2 -54.257 -17.741 -21.784 0.7 73.77 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . Q 2 -55.105 -16.651 -21.927 0.7 74.74 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . Q 2 -56.51 -16.53 -21.919 0.7 73.28 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . Q 2 -57.341 -17.553 -21.747 0.7 73.83 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . Q 2 -57.034 -15.292 -22.085 0.7 71.55 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . Q 2 -56.195 -14.262 -22.255 0.7 72.46 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . Q 2 -54.865 -14.256 -22.281 0.7 74.24 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . Q 2 -54.371 -15.494 -22.11 0.7 75.48 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #