data_7QYS # _model_server_result.job_id TY6_XKFh-DtKQy3R0co1rw _model_server_result.datetime_utc '2024-10-19 08:23:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":401}' # _entry.id 7QYS # _exptl.entry_id 7QYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.94 _cell.angle_beta 84.37 _cell.angle_gamma 89.97 _cell.entry_id 7QYS _cell.length_a 95.905 _cell.length_b 96.091 _cell.length_c 156.992 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,Q,R,S,T 1 1 E,F,G,H,U,V,W 2 1 I,J,K,L,X,Y 3 1 M,N,O,P,Z,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7QYS _atom_sites.fract_transf_matrix[1][1] 0.010427 _atom_sites.fract_transf_matrix[1][2] -0.000005 _atom_sites.fract_transf_matrix[1][3] -0.001028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010407 _atom_sites.fract_transf_matrix[2][3] -0.000193 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ADP A 1 401 301 ADP ADP . R 2 ADP B 1 401 301 ADP ADP . S 2 ADP C 1 401 301 ADP ADP . T 2 ADP D 1 401 301 ADP ADP . U 2 ADP E 1 401 301 ADP ADP . V 2 ADP G 1 401 301 ADP ADP . W 2 ADP H 1 401 301 ADP ADP . X 2 ADP J 1 401 301 ADP ADP . Y 2 ADP K 1 401 301 ADP ADP . Z 2 ADP M 1 401 301 ADP ADP . AA 2 ADP O 1 401 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Z 2 -1.794 -15.495 57.526 0.7 90.46 ? PB ADP 401 M 1 HETATM 2 O O1B ADP . . . Z 2 -3.144 -15.588 56.859 0.7 88.7 ? O1B ADP 401 M 1 HETATM 3 O O2B ADP . . . Z 2 -1.888 -15.472 59.034 0.7 86.5 ? O2B ADP 401 M 1 HETATM 4 O O3B ADP . . . Z 2 -0.821 -16.531 57.018 0.7 91.44 ? O3B ADP 401 M 1 HETATM 5 P PA ADP . . . Z 2 -0.814 -12.731 57.901 0.7 94.08 ? PA ADP 401 M 1 HETATM 6 O O1A ADP . . . Z 2 -2.018 -11.847 57.923 0.7 92.05 ? O1A ADP 401 M 1 HETATM 7 O O2A ADP . . . Z 2 -0.202 -13.116 59.208 0.7 93.18 ? O2A ADP 401 M 1 HETATM 8 O O3A ADP . . . Z 2 -1.173 -14.068 57.087 0.7 92.13 ? O3A ADP 401 M 1 HETATM 9 O O5' ADP . . . Z 2 0.309 -12.079 56.954 0.7 90.07 ? O5' ADP 401 M 1 HETATM 10 C C5' ADP . . . Z 2 1.484 -12.866 56.625 0.7 87.78 ? C5' ADP 401 M 1 HETATM 11 C C4' ADP . . . Z 2 2.621 -11.958 56.219 0.7 86.61 ? C4' ADP 401 M 1 HETATM 12 O O4' ADP . . . Z 2 2.13 -10.878 55.385 0.7 85.56 ? O4' ADP 401 M 1 HETATM 13 C C3' ADP . . . Z 2 3.355 -11.216 57.341 0.7 85.21 ? C3' ADP 401 M 1 HETATM 14 O O3' ADP . . . Z 2 4.267 -12.054 58.041 0.7 84.73 ? O3' ADP 401 M 1 HETATM 15 C C2' ADP . . . Z 2 4.063 -10.124 56.535 0.7 83.27 ? C2' ADP 401 M 1 HETATM 16 O O2' ADP . . . Z 2 5.257 -10.576 55.933 0.7 81.97 ? O2' ADP 401 M 1 HETATM 17 C C1' ADP . . . Z 2 3.013 -9.778 55.477 0.7 81.95 ? C1' ADP 401 M 1 HETATM 18 N N9 ADP . . . Z 2 2.253 -8.576 55.803 0.7 76.55 ? N9 ADP 401 M 1 HETATM 19 C C8 ADP . . . Z 2 0.943 -8.498 56.203 0.7 73.79 ? C8 ADP 401 M 1 HETATM 20 N N7 ADP . . . Z 2 0.543 -7.273 56.44 0.7 71.95 ? N7 ADP 401 M 1 HETATM 21 C C5 ADP . . . Z 2 1.661 -6.491 56.187 0.7 72.17 ? C5 ADP 401 M 1 HETATM 22 C C6 ADP . . . Z 2 1.884 -5.102 56.259 0.7 70 ? C6 ADP 401 M 1 HETATM 23 N N6 ADP . . . Z 2 0.958 -4.224 56.631 0.7 69.26 ? N6 ADP 401 M 1 HETATM 24 N N1 ADP . . . Z 2 3.12 -4.647 55.939 0.7 69.38 ? N1 ADP 401 M 1 HETATM 25 C C2 ADP . . . Z 2 4.052 -5.537 55.57 0.7 70.24 ? C2 ADP 401 M 1 HETATM 26 N N3 ADP . . . Z 2 3.957 -6.86 55.468 0.7 72.62 ? N3 ADP 401 M 1 HETATM 27 C C4 ADP . . . Z 2 2.723 -7.284 55.793 0.7 74.39 ? C4 ADP 401 M 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 118 _model_server_stats.create_model_time_ms 169 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #