data_7QZ6
#
_model_server_result.job_id            CrjsXyPQ5Hcz-pz0IymsTA 
_model_server_result.datetime_utc      '2024-11-29 06:43:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7QZ6 
#
_exptl.entry_id    7QZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              527.52 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DAUNOMYCIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.31 
_cell.angle_gamma         90 
_cell.entry_id            7QZ6 
_cell.length_a            103.157 
_cell.length_b            35.382 
_cell.length_c            67.787 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 66 A TYR 66 1_555 A N FTR 67 A FTR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C FTR 67 A FTR 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C SER 95 A SER 95 1_555 A N FTR 96 A FTR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C FTR 96 A FTR 96 1_555 A N SER 97 A SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 B C TYR 66 B TYR 66 1_555 B N FTR 67 B FTR 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C FTR 67 B FTR 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 B C SER 95 B SER 95 1_555 B N FTR 96 B FTR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale8 B C FTR 96 B FTR 96 1_555 B N SER 97 B SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C27 H29 N O10' 
_chem_comp.formula_weight    527.52 
_chem_comp.id                DM1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DAUNOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DAUNORUBICIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DM1 doub 70 n y 
C1 C20 DM1 sing 71 n y 
C1 H1 DM1 sing 72 n n 
C2 C3 DM1 sing 73 n y 
C2 H2 DM1 sing 74 n n 
C3 C4 DM1 doub 75 n y 
C3 H3 DM1 sing 76 n n 
C4 O4 DM1 sing 77 n n 
C4 C5 DM1 sing 78 n y 
O4 C21 DM1 sing 79 n n 
C5 C6 DM1 sing 80 n n 
C5 C20 DM1 doub 81 n y 
C6 O6 DM1 doub 82 n n 
C6 C7 DM1 sing 83 n n 
C7 C8 DM1 doub 84 n y 
C7 C18 DM1 sing 85 n y 
C8 O8 DM1 sing 86 n n 
C8 C9 DM1 sing 87 n y 
O8 HO8 DM1 sing 88 n n 
C9 C10 DM1 sing 89 n n 
C9 C16 DM1 doub 90 n y 
C10 O10 DM1 sing 91 n n 
C10 C11 DM1 sing 92 n n 
C10 H10 DM1 sing 93 n n 
O10 C1' DM1 sing 94 n n 
C11 C12 DM1 sing 95 n n 
C11 H111 DM1 sing 96 n n 
C11 H112 DM1 sing 97 n n 
C12 O12 DM1 sing 98 n n 
C12 C13 DM1 sing 99 n n 
C12 C15 DM1 sing 100 n n 
O12 HO12 DM1 sing 101 n n 
C13 O13 DM1 doub 102 n n 
C13 C14 DM1 sing 103 n n 
C14 H141 DM1 sing 104 n n 
C14 H142 DM1 sing 105 n n 
C14 H143 DM1 sing 106 n n 
C15 C16 DM1 sing 107 n n 
C15 H151 DM1 sing 108 n n 
C15 H152 DM1 sing 109 n n 
C16 C17 DM1 sing 110 n y 
C17 O17 DM1 sing 111 n n 
C17 C18 DM1 doub 112 n y 
O17 HO17 DM1 sing 113 n n 
C18 C19 DM1 sing 114 n n 
C19 O19 DM1 doub 115 n n 
C19 C20 DM1 sing 116 n n 
C21 H211 DM1 sing 117 n n 
C21 H212 DM1 sing 118 n n 
C21 H213 DM1 sing 119 n n 
C1' C2' DM1 sing 120 n n 
C1' O5' DM1 sing 121 n n 
C1' H1' DM1 sing 122 n n 
C2' C3' DM1 sing 123 n n 
C2' "H2'1" DM1 sing 124 n n 
C2' "H2'2" DM1 sing 125 n n 
C3' N3' DM1 sing 126 n n 
C3' C4' DM1 sing 127 n n 
C3' H3' DM1 sing 128 n n 
N3' "HN'1" DM1 sing 129 n n 
N3' "HN'2" DM1 sing 130 n n 
C4' O4' DM1 sing 131 n n 
C4' C5' DM1 sing 132 n n 
C4' H4' DM1 sing 133 n n 
O4' HO4' DM1 sing 134 n n 
C5' O5' DM1 sing 135 n n 
C5' C6' DM1 sing 136 n n 
C5' H5' DM1 sing 137 n n 
C6' "H6'1" DM1 sing 138 n n 
C6' "H6'2" DM1 sing 139 n n 
C6' "H6'3" DM1 sing 140 n n 
#
_atom_sites.entry_id                     7QZ6 
_atom_sites.fract_transf_matrix[1][1]    0.009694 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001244 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DM1 A 1 201 1 DM1 DM1 . 
D 3 HOH A 1 301 14 HOH HOH . 
D 3 HOH A 2 302 20 HOH HOH . 
D 3 HOH A 3 303 10 HOH HOH . 
D 3 HOH A 4 304 17 HOH HOH . 
D 3 HOH A 5 305 9 HOH HOH . 
D 3 HOH A 6 306 6 HOH HOH . 
D 3 HOH A 7 307 3 HOH HOH . 
D 3 HOH A 8 308 5 HOH HOH . 
D 3 HOH A 9 309 4 HOH HOH . 
D 3 HOH A 10 310 8 HOH HOH . 
D 3 HOH A 11 311 1 HOH HOH . 
D 3 HOH A 12 312 2 HOH HOH . 
D 3 HOH A 13 313 21 HOH HOH . 
D 3 HOH A 14 314 7 HOH HOH . 
D 3 HOH A 15 315 18 HOH HOH . 
D 3 HOH A 16 316 23 HOH HOH . 
D 3 HOH A 17 317 12 HOH HOH . 
D 3 HOH A 18 318 16 HOH HOH . 
D 3 HOH A 19 319 22 HOH HOH . 
E 3 HOH B 1 201 13 HOH HOH . 
E 3 HOH B 2 202 11 HOH HOH . 
E 3 HOH B 3 203 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DM1 . . . C 2 0.397 6.518 89.83 1 94.63 ? C1 DM1 201 A 1 
HETATM 2 C C2 DM1 . . . C 2 -0.92 6.627 90.275 1 93.99 ? C2 DM1 201 A 1 
HETATM 3 C C3 DM1 . . . C 2 -1.849 5.615 90.044 1 94.69 ? C3 DM1 201 A 1 
HETATM 4 C C4 DM1 . . . C 2 -1.47 4.465 89.355 1 105.93 ? C4 DM1 201 A 1 
HETATM 5 O O4 DM1 . . . C 2 -2.369 3.455 89.115 1 104.26 ? O4 DM1 201 A 1 
HETATM 6 C C5 DM1 . . . C 2 -0.064 4.351 88.874 1 101.75 ? C5 DM1 201 A 1 
HETATM 7 C C6 DM1 . . . C 2 0.362 3.22 88.181 1 103.05 ? C6 DM1 201 A 1 
HETATM 8 O O6 DM1 . . . C 2 -0.429 2.276 87.941 1 97.46 ? O6 DM1 201 A 1 
HETATM 9 C C7 DM1 . . . C 2 1.684 3.14 87.753 1 101.57 ? C7 DM1 201 A 1 
HETATM 10 C C8 DM1 . . . C 2 2.105 2.015 87.063 1 102.09 ? C8 DM1 201 A 1 
HETATM 11 O O8 DM1 . . . C 2 1.213 1.013 86.826 1 110.08 ? O8 DM1 201 A 1 
HETATM 12 C C9 DM1 . . . C 2 3.424 1.913 86.63 1 104.79 ? C9 DM1 201 A 1 
HETATM 13 C C10 DM1 . . . C 2 3.846 0.712 85.88 1 117.8 ? C10 DM1 201 A 1 
HETATM 14 O O10 DM1 . . . C 2 2.675 0.162 85.275 1 131.2 ? O10 DM1 201 A 1 
HETATM 15 C C11 DM1 . . . C 2 4.777 1.103 84.736 1 116.56 ? C11 DM1 201 A 1 
HETATM 16 C C12 DM1 . . . C 2 5.806 2.213 85.03 1 125.25 ? C12 DM1 201 A 1 
HETATM 17 O O12 DM1 . . . C 2 5.373 3.393 84.372 1 129.34 ? O12 DM1 201 A 1 
HETATM 18 C C13 DM1 . . . C 2 7.207 1.925 84.516 1 132.51 ? C13 DM1 201 A 1 
HETATM 19 O O13 DM1 . . . C 2 8.036 2.812 84.593 1 150.96 ? O13 DM1 201 A 1 
HETATM 20 C C14 DM1 . . . C 2 7.594 0.617 83.88 1 118.98 ? C14 DM1 201 A 1 
HETATM 21 C C15 DM1 . . . C 2 5.762 2.827 86.413 1 118.04 ? C15 DM1 201 A 1 
HETATM 22 C C16 DM1 . . . C 2 4.323 2.946 86.874 1 106.55 ? C16 DM1 201 A 1 
HETATM 23 C C17 DM1 . . . C 2 3.897 4.079 87.565 1 109.55 ? C17 DM1 201 A 1 
HETATM 24 O O17 DM1 . . . C 2 4.772 5.094 87.817 1 106.97 ? O17 DM1 201 A 1 
HETATM 25 C C18 DM1 . . . C 2 2.578 4.173 88.008 1 96.81 ? C18 DM1 201 A 1 
HETATM 26 C C19 DM1 . . . C 2 2.152 5.301 88.701 1 99.45 ? C19 DM1 201 A 1 
HETATM 27 O O19 DM1 . . . C 2 2.959 6.231 88.931 1 97.25 ? O19 DM1 201 A 1 
HETATM 28 C C20 DM1 . . . C 2 0.829 5.39 89.136 1 101.55 ? C20 DM1 201 A 1 
HETATM 29 C C21 DM1 . . . C 2 -3.345 3.122 90.1 1 93.59 ? C21 DM1 201 A 1 
HETATM 30 C C1' DM1 . . . C 2 2.432 -1.243 85.366 1 120.64 ? C1' DM1 201 A 1 
HETATM 31 C C2' DM1 . . . C 2 0.943 -1.42 85.094 1 125.85 ? C2' DM1 201 A 1 
HETATM 32 C C3' DM1 . . . C 2 0.667 -0.855 83.708 1 120.56 ? C3' DM1 201 A 1 
HETATM 33 N N3' DM1 . . . C 2 -0.743 -0.861 83.404 1 101.02 ? N3' DM1 201 A 1 
HETATM 34 C C4' DM1 . . . C 2 1.449 -1.69 82.703 1 130.43 ? C4' DM1 201 A 1 
HETATM 35 O O4' DM1 . . . C 2 0.995 -3.052 82.744 1 133.24 ? O4' DM1 201 A 1 
HETATM 36 C C5' DM1 . . . C 2 2.941 -1.592 83.031 1 121.01 ? C5' DM1 201 A 1 
HETATM 37 O O5' DM1 . . . C 2 3.19 -1.978 84.392 1 123.12 ? O5' DM1 201 A 1 
HETATM 38 C C6' DM1 . . . C 2 3.772 -2.442 82.07 1 105.34 ? C6' DM1 201 A 1 
HETATM 39 H H1 DM1 . . . C 2 1.095 7.323 90.028 1 113.61 ? H1 DM1 201 A 1 
HETATM 40 H H2 DM1 . . . C 2 -1.228 7.517 90.811 1 112.83 ? H2 DM1 201 A 1 
HETATM 41 H H3 DM1 . . . C 2 -2.866 5.721 90.401 1 113.67 ? H3 DM1 201 A 1 
HETATM 42 H H10 DM1 . . . C 2 4.363 0.014 86.553 1 141.41 ? H10 DM1 201 A 1 
HETATM 43 H H111 DM1 . . . C 2 4.161 1.427 83.896 1 139.91 ? H111 DM1 201 A 1 
HETATM 44 H H112 DM1 . . . C 2 5.324 0.209 84.427 1 139.91 ? H112 DM1 201 A 1 
HETATM 45 H HO12 DM1 . . . C 2 6.105 4.024 84.326 1 155.26 ? HO12 DM1 201 A 1 
HETATM 46 H H141 DM1 . . . C 2 8.634 0.615 83.681 1 142.82 ? H141 DM1 201 A 1 
HETATM 47 H H142 DM1 . . . C 2 7.06 0.494 82.973 1 142.82 ? H142 DM1 201 A 1 
HETATM 48 H H143 DM1 . . . C 2 7.358 -0.178 84.538 1 142.82 ? H143 DM1 201 A 1 
HETATM 49 H H151 DM1 . . . C 2 6.227 3.815 86.393 1 141.7 ? H151 DM1 201 A 1 
HETATM 50 H H152 DM1 . . . C 2 6.325 2.205 87.112 1 141.7 ? H152 DM1 201 A 1 
HETATM 51 H HO17 DM1 . . . C 2 5.271 4.897 88.621 1 128.41 ? HO17 DM1 201 A 1 
HETATM 52 H H211 DM1 . . . C 2 -3.817 2.211 89.836 1 112.36 ? H211 DM1 201 A 1 
HETATM 53 H H212 DM1 . . . C 2 -4.07 3.892 90.153 1 112.36 ? H212 DM1 201 A 1 
HETATM 54 H H213 DM1 . . . C 2 -2.874 3.015 91.042 1 112.36 ? H213 DM1 201 A 1 
HETATM 55 H H1' DM1 . . . C 2 2.718 -1.628 86.355 1 144.82 ? H1' DM1 201 A 1 
HETATM 56 H "H2'1" DM1 . . . C 2 0.353 -0.891 85.845 1 151.07 ? "H2'1" DM1 201 A 1 
HETATM 57 H "H2'2" DM1 . . . C 2 0.671 -2.476 85.136 1 151.07 ? "H2'2" DM1 201 A 1 
HETATM 58 H H3' DM1 . . . C 2 0.983 0.196 83.661 1 144.72 ? H3' DM1 201 A 1 
HETATM 59 H "HN'1" DM1 . . . C 2 -1.389 -0.357 83.995 1 121.28 ? "HN'1" DM1 201 A 1 
HETATM 60 H "HN'2" DM1 . . . C 2 -1.084 -1.369 82.601 1 121.28 ? "HN'2" DM1 201 A 1 
HETATM 61 H H4' DM1 . . . C 2 1.283 -1.316 81.683 1 156.57 ? H4' DM1 201 A 1 
HETATM 62 H HO4' DM1 . . . C 2 1.305 -3.519 81.956 1 159.94 ? HO4' DM1 201 A 1 
HETATM 63 H H5' DM1 . . . C 2 3.246 -0.543 82.913 1 145.25 ? H5' DM1 201 A 1 
HETATM 64 H "H6'1" DM1 . . . C 2 3.57 -2.147 81.073 1 126.46 ? "H6'1" DM1 201 A 1 
HETATM 65 H "H6'2" DM1 . . . C 2 3.519 -3.463 82.194 1 126.46 ? "H6'2" DM1 201 A 1 
HETATM 66 H "H6'3" DM1 . . . C 2 4.801 -2.305 82.278 1 126.46 ? "H6'3" DM1 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           420 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           66 
#