data_7QZ7
#
_model_server_result.job_id            tP19Wuekh_dtTjVnMazHQg 
_model_server_result.datetime_utc      '2024-11-14 07:00:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qz7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7QZ7 
#
_exptl.entry_id    7QZ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              527.52 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DAUNOMYCIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.01 
_cell.angle_gamma         90 
_cell.entry_id            7QZ7 
_cell.length_a            102.495 
_cell.length_b            35.091 
_cell.length_c            68.074 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QZ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 66 A TYR 66 1_555 A N TFW 67 A TFW 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C TFW 67 A TFW 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C SER 95 A SER 95 1_555 A N TFW 96 A TFW 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C TFW 96 A TFW 96 1_555 A N SER 97 A SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale5 B C TYR 66 B TYR 66 1_555 B N TFW 67 B TFW 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C TFW 67 B TFW 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 B C SER 95 B SER 95 1_555 B N TFW 96 B TFW 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale8 B C TFW 96 B TFW 96 1_555 B N SER 97 B SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C27 H29 N O10' 
_chem_comp.formula_weight    527.52 
_chem_comp.id                DM1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DAUNOMYCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DAUNORUBICIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DM1 doub 70 n y 
C1 C20 DM1 sing 71 n y 
C1 H1 DM1 sing 72 n n 
C2 C3 DM1 sing 73 n y 
C2 H2 DM1 sing 74 n n 
C3 C4 DM1 doub 75 n y 
C3 H3 DM1 sing 76 n n 
C4 O4 DM1 sing 77 n n 
C4 C5 DM1 sing 78 n y 
O4 C21 DM1 sing 79 n n 
C5 C6 DM1 sing 80 n n 
C5 C20 DM1 doub 81 n y 
C6 O6 DM1 doub 82 n n 
C6 C7 DM1 sing 83 n n 
C7 C8 DM1 doub 84 n y 
C7 C18 DM1 sing 85 n y 
C8 O8 DM1 sing 86 n n 
C8 C9 DM1 sing 87 n y 
O8 HO8 DM1 sing 88 n n 
C9 C10 DM1 sing 89 n n 
C9 C16 DM1 doub 90 n y 
C10 O10 DM1 sing 91 n n 
C10 C11 DM1 sing 92 n n 
C10 H10 DM1 sing 93 n n 
O10 C1' DM1 sing 94 n n 
C11 C12 DM1 sing 95 n n 
C11 H111 DM1 sing 96 n n 
C11 H112 DM1 sing 97 n n 
C12 O12 DM1 sing 98 n n 
C12 C13 DM1 sing 99 n n 
C12 C15 DM1 sing 100 n n 
O12 HO12 DM1 sing 101 n n 
C13 O13 DM1 doub 102 n n 
C13 C14 DM1 sing 103 n n 
C14 H141 DM1 sing 104 n n 
C14 H142 DM1 sing 105 n n 
C14 H143 DM1 sing 106 n n 
C15 C16 DM1 sing 107 n n 
C15 H151 DM1 sing 108 n n 
C15 H152 DM1 sing 109 n n 
C16 C17 DM1 sing 110 n y 
C17 O17 DM1 sing 111 n n 
C17 C18 DM1 doub 112 n y 
O17 HO17 DM1 sing 113 n n 
C18 C19 DM1 sing 114 n n 
C19 O19 DM1 doub 115 n n 
C19 C20 DM1 sing 116 n n 
C21 H211 DM1 sing 117 n n 
C21 H212 DM1 sing 118 n n 
C21 H213 DM1 sing 119 n n 
C1' C2' DM1 sing 120 n n 
C1' O5' DM1 sing 121 n n 
C1' H1' DM1 sing 122 n n 
C2' C3' DM1 sing 123 n n 
C2' "H2'1" DM1 sing 124 n n 
C2' "H2'2" DM1 sing 125 n n 
C3' N3' DM1 sing 126 n n 
C3' C4' DM1 sing 127 n n 
C3' H3' DM1 sing 128 n n 
N3' "HN'1" DM1 sing 129 n n 
N3' "HN'2" DM1 sing 130 n n 
C4' O4' DM1 sing 131 n n 
C4' C5' DM1 sing 132 n n 
C4' H4' DM1 sing 133 n n 
O4' HO4' DM1 sing 134 n n 
C5' O5' DM1 sing 135 n n 
C5' C6' DM1 sing 136 n n 
C5' H5' DM1 sing 137 n n 
C6' "H6'1" DM1 sing 138 n n 
C6' "H6'2" DM1 sing 139 n n 
C6' "H6'3" DM1 sing 140 n n 
#
_atom_sites.entry_id                     7QZ7 
_atom_sites.fract_transf_matrix[1][1]    0.009757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028497 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014835 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DM1 B 1 201 127 DM1 DM1 . 
D 3 HOH A 1 201 1 HOH HOH . 
E 3 HOH B 1 301 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DM1 . . . C 2 110.883 5.652 22.604 1 66.51 ? C1 DM1 201 B 1 
HETATM 2 C C2 DM1 . . . C 2 109.64 5.832 23.211 1 81.22 ? C2 DM1 201 B 1 
HETATM 3 C C3 DM1 . . . C 2 108.69 4.813 23.231 1 79.38 ? C3 DM1 201 B 1 
HETATM 4 C C4 DM1 . . . C 2 108.974 3.592 22.638 1 85.91 ? C4 DM1 201 B 1 
HETATM 5 O O4 DM1 . . . C 2 108.054 2.573 22.631 1 95.53 ? O4 DM1 201 B 1 
HETATM 6 C C5 DM1 . . . C 2 110.298 3.408 21.985 1 93.07 ? C5 DM1 201 B 1 
HETATM 7 C C6 DM1 . . . C 2 110.616 2.196 21.38 1 104.47 ? C6 DM1 201 B 1 
HETATM 8 O O6 DM1 . . . C 2 109.799 1.241 21.366 1 104.7 ? O6 DM1 201 B 1 
HETATM 9 C C7 DM1 . . . C 2 111.861 2.043 20.778 1 102.15 ? C7 DM1 201 B 1 
HETATM 10 C C8 DM1 . . . C 2 112.168 0.828 20.174 1 106.6 ? C8 DM1 201 B 1 
HETATM 11 O O8 DM1 . . . C 2 111.237 -0.174 20.19 1 113.03 ? O8 DM1 201 B 1 
HETATM 12 C C9 DM1 . . . C 2 113.402 0.651 19.549 1 99.92 ? C9 DM1 201 B 1 
HETATM 13 C C10 DM1 . . . C 2 113.681 -0.685 18.962 1 107.53 ? C10 DM1 201 B 1 
HETATM 14 O O10 DM1 . . . C 2 112.639 -1.08 18.041 1 117.85 ? O10 DM1 201 B 1 
HETATM 15 C C11 DM1 . . . C 2 115.041 -0.821 18.285 1 113.33 ? C11 DM1 201 B 1 
HETATM 16 C C12 DM1 . . . C 2 115.779 0.462 17.925 1 117.76 ? C12 DM1 201 B 1 
HETATM 17 O O12 DM1 . . . C 2 115.159 0.914 16.728 1 131.45 ? O12 DM1 201 B 1 
HETATM 18 C C13 DM1 . . . C 2 117.237 0.202 17.631 1 128.1 ? C13 DM1 201 B 1 
HETATM 19 O O13 DM1 . . . C 2 118.053 1.071 17.894 1 131.04 ? O13 DM1 201 B 1 
HETATM 20 C C14 DM1 . . . C 2 117.645 -1.099 17.005 1 108.01 ? C14 DM1 201 B 1 
HETATM 21 C C15 DM1 . . . C 2 115.694 1.589 18.946 1 100.92 ? C15 DM1 201 B 1 
HETATM 22 C C16 DM1 . . . C 2 114.329 1.694 19.571 1 87.66 ? C16 DM1 201 B 1 
HETATM 23 C C17 DM1 . . . C 2 114.019 2.906 20.183 1 89.81 ? C17 DM1 201 B 1 
HETATM 24 O O17 DM1 . . . C 2 114.928 3.92 20.173 1 74.69 ? O17 DM1 201 B 1 
HETATM 25 C C18 DM1 . . . C 2 112.784 3.088 20.787 1 88.03 ? C18 DM1 201 B 1 
HETATM 26 C C19 DM1 . . . C 2 112.47 4.296 21.398 1 78.66 ? C19 DM1 201 B 1 
HETATM 27 O O19 DM1 . . . C 2 113.297 5.234 21.398 1 83.27 ? O19 DM1 201 B 1 
HETATM 28 C C20 DM1 . . . C 2 111.219 4.451 22 1 66.94 ? C20 DM1 201 B 1 
HETATM 29 C C21 DM1 . . . C 2 107.833 1.8 23.814 1 108.13 ? C21 DM1 201 B 1 
HETATM 30 C C1' DM1 . . . C 2 112.492 -2.497 17.956 1 126.64 ? C1' DM1 201 B 1 
HETATM 31 C C2' DM1 . . . C 2 111.113 -2.902 17.428 1 136.25 ? C2' DM1 201 B 1 
HETATM 32 C C3' DM1 . . . C 2 110.927 -2.586 15.946 1 144.88 ? C3' DM1 201 B 1 
HETATM 33 N N3' DM1 . . . C 2 109.738 -3.26 15.45 1 118.49 ? N3' DM1 201 B 1 
HETATM 34 C C4' DM1 . . . C 2 112.123 -3.025 15.099 1 142.99 ? C4' DM1 201 B 1 
HETATM 35 O O4' DM1 . . . C 2 112.147 -4.448 14.969 1 135.08 ? O4' DM1 201 B 1 
HETATM 36 C C5' DM1 . . . C 2 113.41 -2.517 15.742 1 130.07 ? C5' DM1 201 B 1 
HETATM 37 O O5' DM1 . . . C 2 113.496 -3.039 17.08 1 141.58 ? O5' DM1 201 B 1 
HETATM 38 C C6' DM1 . . . C 2 114.648 -2.895 14.941 1 112.33 ? C6' DM1 201 B 1 
HETATM 39 H H1 DM1 . . . C 2 111.598 6.465 22.605 1 80.35 ? H1 DM1 201 B 1 
HETATM 40 H H2 DM1 . . . C 2 109.409 6.783 23.675 1 98 ? H2 DM1 201 B 1 
HETATM 41 H H3 DM1 . . . C 2 107.732 4.974 23.71 1 95.78 ? H3 DM1 201 B 1 
HETATM 42 H HO8 DM1 . . . C 2 111.416 -0.77 20.93 1 136.17 ? HO8 DM1 201 B 1 
HETATM 43 H H10 DM1 . . . C 2 113.72 -1.367 19.824 1 129.57 ? H10 DM1 201 B 1 
HETATM 44 H H111 DM1 . . . C 2 114.899 -1.393 17.365 1 136.53 ? H111 DM1 201 B 1 
HETATM 45 H H112 DM1 . . . C 2 115.686 -1.403 18.946 1 136.53 ? H112 DM1 201 B 1 
HETATM 46 H HO12 DM1 . . . C 2 115.72 0.695 15.971 1 158.27 ? HO12 DM1 201 B 1 
HETATM 47 H H141 DM1 . . . C 2 118.69 -1.097 16.834 1 130.14 ? H141 DM1 201 B 1 
HETATM 48 H H142 DM1 . . . C 2 117.137 -1.222 16.083 1 130.14 ? H142 DM1 201 B 1 
HETATM 49 H H143 DM1 . . . C 2 117.395 -1.898 17.654 1 130.14 ? H143 DM1 201 B 1 
HETATM 50 H H151 DM1 . . . C 2 115.936 2.535 18.456 1 121.63 ? H151 DM1 201 B 1 
HETATM 51 H H152 DM1 . . . C 2 116.434 1.418 19.73 1 121.63 ? H152 DM1 201 B 1 
HETATM 52 H HO17 DM1 . . . C 2 115.319 4.012 21.052 1 90.16 ? HO17 DM1 201 B 1 
HETATM 53 H H211 DM1 . . . C 2 107.122 1.041 23.612 1 130.28 ? H211 DM1 201 B 1 
HETATM 54 H H212 DM1 . . . C 2 107.468 2.43 24.583 1 130.28 ? H212 DM1 201 B 1 
HETATM 55 H H213 DM1 . . . C 2 108.744 1.358 24.122 1 130.28 ? H213 DM1 201 B 1 
HETATM 56 H H1' DM1 . . . C 2 112.59 -2.904 18.972 1 152.5 ? H1' DM1 201 B 1 
HETATM 57 H "H2'1" DM1 . . . C 2 110.346 -2.378 18.002 1 164.03 ? "H2'1" DM1 201 B 1 
HETATM 58 H "H2'2" DM1 . . . C 2 110.975 -3.974 17.583 1 164.03 ? "H2'2" DM1 201 B 1 
HETATM 59 H H3' DM1 . . . C 2 110.825 -1.496 15.858 1 174.39 ? H3' DM1 201 B 1 
HETATM 60 H "HN'1" DM1 . . . C 2 108.845 -3.102 15.896 1 142.72 ? "HN'1" DM1 201 B 1 
HETATM 61 H "HN'2" DM1 . . . C 2 109.804 -3.885 14.66 1 142.72 ? "HN'2" DM1 201 B 1 
HETATM 62 H H4' DM1 . . . C 2 112.034 -2.602 14.089 1 172.12 ? H4' DM1 201 B 1 
HETATM 63 H HO4' DM1 . . . C 2 112.747 -4.697 14.253 1 162.63 ? HO4' DM1 201 B 1 
HETATM 64 H H5' DM1 . . . C 2 113.376 -1.419 15.767 1 156.62 ? H5' DM1 201 B 1 
HETATM 65 H "H6'1" DM1 . . . C 2 114.571 -2.497 13.963 1 135.33 ? "H6'1" DM1 201 B 1 
HETATM 66 H "H6'2" DM1 . . . C 2 114.725 -3.95 14.888 1 135.33 ? "H6'2" DM1 201 B 1 
HETATM 67 H "H6'3" DM1 . . . C 2 115.509 -2.502 15.416 1 135.33 ? "H6'3" DM1 201 B 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           67 
#