data_7QZA
#
_model_server_result.job_id            W31hvWW3yWmunMpJH0k-1A 
_model_server_result.datetime_utc      '2024-11-16 07:24:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    7QZA 
#
_exptl.entry_id    7QZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.02 
_cell.angle_beta          92.93 
_cell.angle_gamma         94 
_cell.entry_id            7QZA 
_cell.length_a            72.957 
_cell.length_b            78.813 
_cell.length_c            98.931 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K,O,Q,R,S 1 1 
D,F,L,N,T 2 1 
E,H,M,P,U 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 72.957 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B CD GLU 135 B GLU 135 1_555 J O1D HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
covale ? covale2 E NH2 ARG 214 E ARG 214 1_555 M O2A HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
metalc ? metalc1 A NE2 HIS 197 A HIS 197 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 B NE2 HIS 197 B HIS 197 1_555 J FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 C NE2 HIS 197 C HIS 197 1_555 K FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc4 D NE2 HIS 197 D HIS 197 1_555 L FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc5 E NE2 HIS 197 E HIS 197 1_555 M FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc6 F NE2 HIS 197 F HIS 197 1_555 N FE HEM . F HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc7 G NE2 HIS 197 G HIS 197 1_555 O FE HEM . G HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc8 H NE2 HIS 197 H HIS 197 1_555 P FE HEM . H HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7QZA 
_atom_sites.fract_transf_matrix[1][1]    0.013707 
_atom_sites.fract_transf_matrix[1][2]    0.000959 
_atom_sites.fract_transf_matrix[1][3]    0.000723 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012719 
_atom_sites.fract_transf_matrix[2][3]    0.000273 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 301 288 HEM HEM . 
J 2 HEM B 1 301 288 HEM HEM . 
K 2 HEM C 1 301 288 HEM HEM . 
L 2 HEM D 1 301 288 HEM HEM . 
M 2 HEM E 1 301 288 HEM HEM . 
N 2 HEM F 1 301 288 HEM HEM . 
O 2 HEM G 1 301 288 HEM HEM . 
P 2 HEM H 1 301 288 HEM HEM . 
Q 3 HOH A 1 401 7 HOH HOH . 
Q 3 HOH A 2 402 11 HOH HOH . 
Q 3 HOH A 3 403 6 HOH HOH . 
R 3 HOH B 1 401 1 HOH HOH . 
S 3 HOH C 1 401 3 HOH HOH . 
S 3 HOH C 2 402 10 HOH HOH . 
S 3 HOH C 3 403 2 HOH HOH . 
T 3 HOH D 1 401 5 HOH HOH . 
T 3 HOH D 2 402 4 HOH HOH . 
T 3 HOH D 3 403 8 HOH HOH . 
U 3 HOH H 1 401 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . M 2 2.689 -12.078 -27.475 1 77.36 ? CHA HEM 301 E 1 
HETATM 2 C CHB HEM . . . M 2 0.541 -7.895 -26.232 1 67.67 ? CHB HEM 301 E 1 
HETATM 3 C CHC HEM . . . M 2 -3.78 -10.028 -26.778 1 68.04 ? CHC HEM 301 E 1 
HETATM 4 C CHD HEM . . . M 2 -1.591 -13.741 -28.974 1 74.77 ? CHD HEM 301 E 1 
HETATM 5 C C1A HEM . . . M 2 2.494 -10.757 -27.128 1 72.6 ? C1A HEM 301 E 1 
HETATM 6 C C2A HEM . . . M 2 3.518 -9.744 -26.973 1 73.36 ? C2A HEM 301 E 1 
HETATM 7 C C3A HEM . . . M 2 2.922 -8.599 -26.633 1 70.14 ? C3A HEM 301 E 1 
HETATM 8 C C4A HEM . . . M 2 1.499 -8.833 -26.555 1 67.83 ? C4A HEM 301 E 1 
HETATM 9 C CMA HEM . . . M 2 3.617 -7.248 -26.365 1 69.75 ? CMA HEM 301 E 1 
HETATM 10 C CAA HEM . . . M 2 5.034 -9.938 -27.173 1 79.33 ? CAA HEM 301 E 1 
HETATM 11 C CBA HEM . . . M 2 5.357 -9.651 -28.637 1 83.79 ? CBA HEM 301 E 1 
HETATM 12 C CGA HEM . . . M 2 4.779 -10.729 -29.519 1 89.07 ? CGA HEM 301 E 1 
HETATM 13 O O1A HEM . . . M 2 5.166 -11.918 -29.348 1 94.64 ? O1A HEM 301 E 1 
HETATM 14 O O2A HEM . . . M 2 3.94 -10.403 -30.399 1 84.25 ? O2A HEM 301 E 1 
HETATM 15 C C1B HEM . . . M 2 -0.818 -8.121 -26.182 1 67.87 ? C1B HEM 301 E 1 
HETATM 16 C C2B HEM . . . M 2 -1.828 -7.248 -25.606 1 66.27 ? C2B HEM 301 E 1 
HETATM 17 C C3B HEM . . . M 2 -3.025 -7.841 -25.768 1 69.99 ? C3B HEM 301 E 1 
HETATM 18 C C4B HEM . . . M 2 -2.804 -9.111 -26.436 1 68.92 ? C4B HEM 301 E 1 
HETATM 19 C CMB HEM . . . M 2 -1.523 -5.878 -24.954 1 61.03 ? CMB HEM 301 E 1 
HETATM 20 C CAB HEM . . . M 2 -4.434 -7.356 -25.334 1 72.12 ? CAB HEM 301 E 1 
HETATM 21 C CBB HEM . . . M 2 -4.672 -6.311 -24.533 1 71.64 ? CBB HEM 301 E 1 
HETATM 22 C C1C HEM . . . M 2 -3.57 -11.258 -27.367 1 68.75 ? C1C HEM 301 E 1 
HETATM 23 C C2C HEM . . . M 2 -4.554 -12.316 -27.564 1 66.54 ? C2C HEM 301 E 1 
HETATM 24 C C3C HEM . . . M 2 -3.939 -13.341 -28.18 1 66.81 ? C3C HEM 301 E 1 
HETATM 25 C C4C HEM . . . M 2 -2.555 -12.961 -28.378 1 70.72 ? C4C HEM 301 E 1 
HETATM 26 C CMC HEM . . . M 2 -6.039 -12.23 -27.136 1 64.22 ? CMC HEM 301 E 1 
HETATM 27 C CAC HEM . . . M 2 -4.502 -14.719 -28.618 1 67.09 ? CAC HEM 301 E 1 
HETATM 28 C CBC HEM . . . M 2 -5.706 -15.202 -28.285 1 68.24 ? CBC HEM 301 E 1 
HETATM 29 C C1D HEM . . . M 2 -0.236 -13.64 -28.763 1 76.25 ? C1D HEM 301 E 1 
HETATM 30 C C2D HEM . . . M 2 0.768 -14.572 -29.223 1 76.53 ? C2D HEM 301 E 1 
HETATM 31 C C3D HEM . . . M 2 1.964 -14.146 -28.817 1 79.82 ? C3D HEM 301 E 1 
HETATM 32 C C4D HEM . . . M 2 1.758 -12.897 -28.083 1 78.43 ? C4D HEM 301 E 1 
HETATM 33 C CMD HEM . . . M 2 0.496 -15.855 -30.034 1 75.62 ? CMD HEM 301 E 1 
HETATM 34 C CAD HEM . . . M 2 3.27 -14.913 -29.148 1 87.15 ? CAD HEM 301 E 1 
HETATM 35 C CBD HEM . . . M 2 4.345 -14.81 -28.07 1 94.61 ? CBD HEM 301 E 1 
HETATM 36 C CGD HEM . . . M 2 5.316 -15.951 -28.22 1 100.34 ? CGD HEM 301 E 1 
HETATM 37 O O1D HEM . . . M 2 6.477 -15.8 -27.768 1 102.89 ? O1D HEM 301 E 1 
HETATM 38 O O2D HEM . . . M 2 4.932 -17.003 -28.794 1 101.65 ? O2D HEM 301 E 1 
HETATM 39 N NA HEM . . . M 2 1.276 -10.16 -26.861 1 68.59 ? NA HEM 301 E 1 
HETATM 40 N NB HEM . . . M 2 -1.45 -9.246 -26.673 1 68.63 ? NB HEM 301 E 1 
HETATM 41 N NC HEM . . . M 2 -2.36 -11.689 -27.874 1 70.78 ? NC HEM 301 E 1 
HETATM 42 N ND HEM . . . M 2 0.401 -12.63 -28.073 1 75.92 ? ND HEM 301 E 1 
HETATM 43 FE FE HEM . . . M 2 -0.516 -10.965 -27.215 1 67.51 ? FE HEM 301 E 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#