data_7QZA # _model_server_result.job_id o1qecaIuZU96zuAFxh7-Ww _model_server_result.datetime_utc '2024-11-16 07:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qza # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 7QZA # _exptl.entry_id 7QZA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.02 _cell.angle_beta 92.93 _cell.angle_gamma 94 _cell.entry_id 7QZA _cell.length_a 72.957 _cell.length_b 78.813 _cell.length_c 98.931 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,I,J,K,O,Q,R,S 1 1 D,F,L,N,T 2 1 E,H,M,P,U 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 72.957 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CD GLU 135 B GLU 135 1_555 J O1D HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale2 E NH2 ARG 214 E ARG 214 1_555 M O2A HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 A NE2 HIS 197 A HIS 197 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 B NE2 HIS 197 B HIS 197 1_555 J FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 C NE2 HIS 197 C HIS 197 1_555 K FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 D NE2 HIS 197 D HIS 197 1_555 L FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc5 E NE2 HIS 197 E HIS 197 1_555 M FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 F NE2 HIS 197 F HIS 197 1_555 N FE HEM . F HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc7 G NE2 HIS 197 G HIS 197 1_555 O FE HEM . G HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 H NE2 HIS 197 H HIS 197 1_555 P FE HEM . H HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7QZA _atom_sites.fract_transf_matrix[1][1] 0.013707 _atom_sites.fract_transf_matrix[1][2] 0.000959 _atom_sites.fract_transf_matrix[1][3] 0.000723 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012719 _atom_sites.fract_transf_matrix[2][3] 0.000273 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 301 288 HEM HEM . J 2 HEM B 1 301 288 HEM HEM . K 2 HEM C 1 301 288 HEM HEM . L 2 HEM D 1 301 288 HEM HEM . M 2 HEM E 1 301 288 HEM HEM . N 2 HEM F 1 301 288 HEM HEM . O 2 HEM G 1 301 288 HEM HEM . P 2 HEM H 1 301 288 HEM HEM . Q 3 HOH A 1 401 7 HOH HOH . Q 3 HOH A 2 402 11 HOH HOH . Q 3 HOH A 3 403 6 HOH HOH . R 3 HOH B 1 401 1 HOH HOH . S 3 HOH C 1 401 3 HOH HOH . S 3 HOH C 2 402 10 HOH HOH . S 3 HOH C 3 403 2 HOH HOH . T 3 HOH D 1 401 5 HOH HOH . T 3 HOH D 2 402 4 HOH HOH . T 3 HOH D 3 403 8 HOH HOH . U 3 HOH H 1 401 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . N 2 42.614 30.556 -3.922 1 70.94 ? CHA HEM 301 F 1 HETATM 2 C CHB HEM . . . N 2 44.409 26.437 -5.761 1 73.26 ? CHB HEM 301 F 1 HETATM 3 C CHC HEM . . . N 2 45.977 28.837 -9.684 1 73.59 ? CHC HEM 301 F 1 HETATM 4 C CHD HEM . . . N 2 43.682 32.793 -8.098 1 77.45 ? CHD HEM 301 F 1 HETATM 5 C C1A HEM . . . N 2 43.023 29.245 -4.047 1 72.1 ? C1A HEM 301 F 1 HETATM 6 C C2A HEM . . . N 2 42.948 28.222 -3.02 1 74.61 ? C2A HEM 301 F 1 HETATM 7 C C3A HEM . . . N 2 43.442 27.091 -3.527 1 70.02 ? C3A HEM 301 F 1 HETATM 8 C C4A HEM . . . N 2 43.848 27.348 -4.892 1 70.59 ? C4A HEM 301 F 1 HETATM 9 C CMA HEM . . . N 2 43.563 25.74 -2.794 1 69.17 ? CMA HEM 301 F 1 HETATM 10 C CAA HEM . . . N 2 42.4 28.407 -1.586 1 81.37 ? CAA HEM 301 F 1 HETATM 11 C CBA HEM . . . N 2 40.946 27.956 -1.521 1 85.53 ? CBA HEM 301 F 1 HETATM 12 C CGA HEM . . . N 2 40.107 28.864 -2.378 1 86.66 ? CGA HEM 301 F 1 HETATM 13 O O1A HEM . . . N 2 40.032 30.081 -2.061 1 87.65 ? O1A HEM 301 F 1 HETATM 14 O O2A HEM . . . N 2 39.51 28.371 -3.369 1 85.65 ? O2A HEM 301 F 1 HETATM 15 C C1B HEM . . . N 2 45.077 26.756 -6.925 1 75.07 ? C1B HEM 301 F 1 HETATM 16 C C2B HEM . . . N 2 46.025 25.909 -7.622 1 70.17 ? C2B HEM 301 F 1 HETATM 17 C C3B HEM . . . N 2 46.446 26.575 -8.714 1 71.16 ? C3B HEM 301 F 1 HETATM 18 C C4B HEM . . . N 2 45.792 27.863 -8.726 1 74.02 ? C4B HEM 301 F 1 HETATM 19 C CMB HEM . . . N 2 46.414 24.491 -7.145 1 67.08 ? CMB HEM 301 F 1 HETATM 20 C CAB HEM . . . N 2 47.459 26.173 -9.813 1 72.61 ? CAB HEM 301 F 1 HETATM 21 C CBB HEM . . . N 2 48.291 25.131 -9.734 1 73.37 ? CBB HEM 301 F 1 HETATM 22 C C1C HEM . . . N 2 45.556 30.145 -9.575 1 73.21 ? C1C HEM 301 F 1 HETATM 23 C C2C HEM . . . N 2 45.951 31.259 -10.417 1 73.27 ? C2C HEM 301 F 1 HETATM 24 C C3C HEM . . . N 2 45.308 32.357 -9.977 1 74.08 ? C3C HEM 301 F 1 HETATM 25 C C4C HEM . . . N 2 44.496 31.963 -8.841 1 75.24 ? C4C HEM 301 F 1 HETATM 26 C CMC HEM . . . N 2 46.937 31.131 -11.602 1 74.8 ? CMC HEM 301 F 1 HETATM 27 C CAC HEM . . . N 2 45.362 33.817 -10.503 1 74.54 ? CAC HEM 301 F 1 HETATM 28 C CBC HEM . . . N 2 46.164 34.249 -11.484 1 74.53 ? CBC HEM 301 F 1 HETATM 29 C C1D HEM . . . N 2 43.184 32.545 -6.835 1 77.13 ? C1D HEM 301 F 1 HETATM 30 C C2D HEM . . . N 2 42.422 33.473 -6.031 1 78.06 ? C2D HEM 301 F 1 HETATM 31 C C3D HEM . . . N 2 42.117 32.891 -4.867 1 78.42 ? C3D HEM 301 F 1 HETATM 32 C C4D HEM . . . N 2 42.675 31.539 -4.893 1 74.62 ? C4D HEM 301 F 1 HETATM 33 C CMD HEM . . . N 2 42.04 34.907 -6.455 1 78.82 ? CMD HEM 301 F 1 HETATM 34 C CAD HEM . . . N 2 41.295 33.615 -3.768 1 83.49 ? CAD HEM 301 F 1 HETATM 35 C CBD HEM . . . N 2 41.572 33.119 -2.351 1 89.94 ? CBD HEM 301 F 1 HETATM 36 C CGD HEM . . . N 2 41.148 34.148 -1.34 1 95.56 ? CGD HEM 301 F 1 HETATM 37 O O1D HEM . . . N 2 40.992 33.777 -0.148 1 96.36 ? O1D HEM 301 F 1 HETATM 38 O O2D HEM . . . N 2 40.965 35.332 -1.724 1 99.25 ? O2D HEM 301 F 1 HETATM 39 N NA HEM . . . N 2 43.58 28.675 -5.178 1 70.7 ? NA HEM 301 F 1 HETATM 40 N NB HEM . . . N 2 44.962 27.945 -7.623 1 80.27 ? NB HEM 301 F 1 HETATM 41 N NC HEM . . . N 2 44.672 30.613 -8.624 1 73.94 ? NC HEM 301 F 1 HETATM 42 N ND HEM . . . N 2 43.319 31.378 -6.109 1 75.85 ? ND HEM 301 F 1 HETATM 43 FE FE HEM . . . N 2 44.407 29.763 -6.748 1 67.11 ? FE HEM 301 F 1 # _model_server_stats.io_time_ms 158 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #