data_7QZY
#
_model_server_result.job_id            kRZjALP9yYim_CwNdWCoCg 
_model_server_result.datetime_utc      '2024-11-16 19:05:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qzy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1208}' 
#
_entry.id    7QZY 
#
_exptl.entry_id    7QZY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7QZY 
_cell.length_a            79.16 
_cell.length_b            79.16 
_cell.length_c            136.456 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QZY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7QZY 
_atom_sites.fract_transf_matrix[1][1]    0.012633 
_atom_sites.fract_transf_matrix[1][2]    0.007293 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 AAA 1 1201 1 SO4 SO4 . 
C 3 CL AAA 1 1202 1109 CL CL . 
D 2 SO4 AAA 1 1203 1301 SO4 SO4 . 
E 4 EDO AAA 1 1204 1 EDO EDO . 
F 4 EDO AAA 1 1205 2 EDO EDO . 
G 4 EDO AAA 1 1206 3 EDO EDO . 
H 4 EDO AAA 1 1207 4 EDO EDO . 
I 4 EDO AAA 1 1208 5 EDO EDO . 
J 4 EDO AAA 1 1209 6 EDO EDO . 
K 4 EDO AAA 1 1210 7 EDO EDO . 
L 5 V3U AAA 1 1211 1201 V3U DRG . 
M 6 HOH AAA 1 1301 1182 HOH HOH . 
M 6 HOH AAA 2 1302 1240 HOH HOH . 
M 6 HOH AAA 3 1303 1171 HOH HOH . 
M 6 HOH AAA 4 1304 1127 HOH HOH . 
M 6 HOH AAA 5 1305 1213 HOH HOH . 
M 6 HOH AAA 6 1306 1150 HOH HOH . 
M 6 HOH AAA 7 1307 1253 HOH HOH . 
M 6 HOH AAA 8 1308 1269 HOH HOH . 
M 6 HOH AAA 9 1309 1230 HOH HOH . 
M 6 HOH AAA 10 1310 1191 HOH HOH . 
M 6 HOH AAA 11 1311 1268 HOH HOH . 
M 6 HOH AAA 12 1312 5 HOH HOH . 
M 6 HOH AAA 13 1313 1160 HOH HOH . 
M 6 HOH AAA 14 1314 1114 HOH HOH . 
M 6 HOH AAA 15 1315 1185 HOH HOH . 
M 6 HOH AAA 16 1316 1225 HOH HOH . 
M 6 HOH AAA 17 1317 1183 HOH HOH . 
M 6 HOH AAA 18 1318 1143 HOH HOH . 
M 6 HOH AAA 19 1319 1123 HOH HOH . 
M 6 HOH AAA 20 1320 1166 HOH HOH . 
M 6 HOH AAA 21 1321 1112 HOH HOH . 
M 6 HOH AAA 22 1322 1237 HOH HOH . 
M 6 HOH AAA 23 1323 1197 HOH HOH . 
M 6 HOH AAA 24 1324 1252 HOH HOH . 
M 6 HOH AAA 25 1325 1168 HOH HOH . 
M 6 HOH AAA 26 1326 1125 HOH HOH . 
M 6 HOH AAA 27 1327 1221 HOH HOH . 
M 6 HOH AAA 28 1328 1134 HOH HOH . 
M 6 HOH AAA 29 1329 1144 HOH HOH . 
M 6 HOH AAA 30 1330 4 HOH HOH . 
M 6 HOH AAA 31 1331 9 HOH HOH . 
M 6 HOH AAA 32 1332 1135 HOH HOH . 
M 6 HOH AAA 33 1333 1209 HOH HOH . 
M 6 HOH AAA 34 1334 1203 HOH HOH . 
M 6 HOH AAA 35 1335 1147 HOH HOH . 
M 6 HOH AAA 36 1336 1136 HOH HOH . 
M 6 HOH AAA 37 1337 1241 HOH HOH . 
M 6 HOH AAA 38 1338 1111 HOH HOH . 
M 6 HOH AAA 39 1339 1120 HOH HOH . 
M 6 HOH AAA 40 1340 1145 HOH HOH . 
M 6 HOH AAA 41 1341 1195 HOH HOH . 
M 6 HOH AAA 42 1342 1236 HOH HOH . 
M 6 HOH AAA 43 1343 1113 HOH HOH . 
M 6 HOH AAA 44 1344 7 HOH HOH . 
M 6 HOH AAA 45 1345 1164 HOH HOH . 
M 6 HOH AAA 46 1346 1139 HOH HOH . 
M 6 HOH AAA 47 1347 1262 HOH HOH . 
M 6 HOH AAA 48 1348 1169 HOH HOH . 
M 6 HOH AAA 49 1349 1181 HOH HOH . 
M 6 HOH AAA 50 1350 10 HOH HOH . 
M 6 HOH AAA 51 1351 1193 HOH HOH . 
M 6 HOH AAA 52 1352 1116 HOH HOH . 
M 6 HOH AAA 53 1353 1205 HOH HOH . 
M 6 HOH AAA 54 1354 1212 HOH HOH . 
M 6 HOH AAA 55 1355 1204 HOH HOH . 
M 6 HOH AAA 56 1356 2 HOH HOH . 
M 6 HOH AAA 57 1357 1119 HOH HOH . 
M 6 HOH AAA 58 1358 1122 HOH HOH . 
M 6 HOH AAA 59 1359 3 HOH HOH . 
M 6 HOH AAA 60 1360 8 HOH HOH . 
M 6 HOH AAA 61 1361 1126 HOH HOH . 
M 6 HOH AAA 62 1362 1167 HOH HOH . 
M 6 HOH AAA 63 1363 1239 HOH HOH . 
M 6 HOH AAA 64 1364 1146 HOH HOH . 
M 6 HOH AAA 65 1365 1 HOH HOH . 
M 6 HOH AAA 66 1366 1231 HOH HOH . 
M 6 HOH AAA 67 1367 1110 HOH HOH . 
M 6 HOH AAA 68 1368 1129 HOH HOH . 
M 6 HOH AAA 69 1369 1254 HOH HOH . 
M 6 HOH AAA 70 1370 1115 HOH HOH . 
M 6 HOH AAA 71 1371 6 HOH HOH . 
M 6 HOH AAA 72 1372 1141 HOH HOH . 
M 6 HOH AAA 73 1373 1132 HOH HOH . 
M 6 HOH AAA 74 1374 1133 HOH HOH . 
M 6 HOH AAA 75 1375 1223 HOH HOH . 
M 6 HOH AAA 76 1376 1248 HOH HOH . 
M 6 HOH AAA 77 1377 16 HOH HOH . 
M 6 HOH AAA 78 1378 1140 HOH HOH . 
M 6 HOH AAA 79 1379 1218 HOH HOH . 
M 6 HOH AAA 80 1380 1118 HOH HOH . 
M 6 HOH AAA 81 1381 1198 HOH HOH . 
M 6 HOH AAA 82 1382 1201 HOH HOH . 
M 6 HOH AAA 83 1383 1184 HOH HOH . 
M 6 HOH AAA 84 1384 1172 HOH HOH . 
M 6 HOH AAA 85 1385 1151 HOH HOH . 
M 6 HOH AAA 86 1386 1156 HOH HOH . 
M 6 HOH AAA 87 1387 1190 HOH HOH . 
M 6 HOH AAA 88 1388 1199 HOH HOH . 
M 6 HOH AAA 89 1389 1217 HOH HOH . 
M 6 HOH AAA 90 1390 1208 HOH HOH . 
M 6 HOH AAA 91 1391 1214 HOH HOH . 
M 6 HOH AAA 92 1392 1246 HOH HOH . 
M 6 HOH AAA 93 1393 1235 HOH HOH . 
M 6 HOH AAA 94 1394 1131 HOH HOH . 
M 6 HOH AAA 95 1395 1256 HOH HOH . 
M 6 HOH AAA 96 1396 1228 HOH HOH . 
M 6 HOH AAA 97 1397 1174 HOH HOH . 
M 6 HOH AAA 98 1398 17 HOH HOH . 
M 6 HOH AAA 99 1399 1154 HOH HOH . 
M 6 HOH AAA 100 1400 1222 HOH HOH . 
M 6 HOH AAA 101 1401 1251 HOH HOH . 
M 6 HOH AAA 102 1402 1187 HOH HOH . 
M 6 HOH AAA 103 1403 1194 HOH HOH . 
M 6 HOH AAA 104 1404 1173 HOH HOH . 
M 6 HOH AAA 105 1405 1266 HOH HOH . 
M 6 HOH AAA 106 1406 1264 HOH HOH . 
M 6 HOH AAA 107 1407 1265 HOH HOH . 
M 6 HOH AAA 108 1408 1186 HOH HOH . 
M 6 HOH AAA 109 1409 1179 HOH HOH . 
M 6 HOH AAA 110 1410 1180 HOH HOH . 
M 6 HOH AAA 111 1411 1175 HOH HOH . 
M 6 HOH AAA 112 1412 1216 HOH HOH . 
M 6 HOH AAA 113 1413 15 HOH HOH . 
M 6 HOH AAA 114 1414 1226 HOH HOH . 
M 6 HOH AAA 115 1415 18 HOH HOH . 
M 6 HOH AAA 116 1416 1157 HOH HOH . 
M 6 HOH AAA 117 1417 1159 HOH HOH . 
M 6 HOH AAA 118 1418 1250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 4 -4.705 31.511 2.129 1 68.73 ? C1 EDO 1208 AAA 1 
HETATM 2 O O1 EDO . . . I 4 -4.36 32.622 1.34 1 61.66 ? O1 EDO 1208 AAA 1 
HETATM 3 C C2 EDO . . . I 4 -5.206 30.458 1.226 1 76.55 ? C2 EDO 1208 AAA 1 
HETATM 4 O O2 EDO . . . I 4 -4.664 30.642 -0.072 1 73.76 ? O2 EDO 1208 AAA 1 
HETATM 5 H H11 EDO . . . I 4 -5.401 31.758 2.772 1 68.72 ? H11 EDO 1208 AAA 1 
HETATM 6 H H12 EDO . . . I 4 -3.918 31.187 2.615 1 68.72 ? H12 EDO 1208 AAA 1 
HETATM 7 H HO1 EDO . . . I 4 -4.046 33.224 1.821 0 64.34 ? HO1 EDO 1208 AAA 1 
HETATM 8 H H21 EDO . . . I 4 -6.184 30.501 1.184 1 73.98 ? H21 EDO 1208 AAA 1 
HETATM 9 H H22 EDO . . . I 4 -4.944 29.579 1.571 1 73.98 ? H22 EDO 1208 AAA 1 
HETATM 10 H HO2 EDO . . . I 4 -5.023 31.319 -0.432 1 74.59 ? HO2 EDO 1208 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#