data_7R05
#
_model_server_result.job_id            BvQIVE0_VcKKZ3y2PKhUSA 
_model_server_result.datetime_utc      '2024-11-05 06:40:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r05 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    7R05 
#
_exptl.entry_id    7R05 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7R05 
_cell.length_a            79.539 
_cell.length_b            79.539 
_cell.length_c            138.471 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R05 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7R05 
_atom_sites.fract_transf_matrix[1][1]    0.012572 
_atom_sites.fract_transf_matrix[1][2]    0.007259 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007222 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 AAA 1 1201 1 SO4 SO4 . 
C 3 CL AAA 1 1202 1109 CL CL . 
D 4 EDO AAA 1 1203 1 EDO EDO . 
E 4 EDO AAA 1 1204 2 EDO EDO . 
F 2 SO4 AAA 1 1205 1 SO4 SO4 . 
G 5 HQX AAA 1 1206 1 HQX DRG . 
H 6 HOH AAA 1 1301 175 HOH HOH . 
H 6 HOH AAA 2 1302 166 HOH HOH . 
H 6 HOH AAA 3 1303 164 HOH HOH . 
H 6 HOH AAA 4 1304 213 HOH HOH . 
H 6 HOH AAA 5 1305 199 HOH HOH . 
H 6 HOH AAA 6 1306 158 HOH HOH . 
H 6 HOH AAA 7 1307 162 HOH HOH . 
H 6 HOH AAA 8 1308 67 HOH HOH . 
H 6 HOH AAA 9 1309 178 HOH HOH . 
H 6 HOH AAA 10 1310 161 HOH HOH . 
H 6 HOH AAA 11 1311 124 HOH HOH . 
H 6 HOH AAA 12 1312 241 HOH HOH . 
H 6 HOH AAA 13 1313 56 HOH HOH . 
H 6 HOH AAA 14 1314 149 HOH HOH . 
H 6 HOH AAA 15 1315 207 HOH HOH . 
H 6 HOH AAA 16 1316 47 HOH HOH . 
H 6 HOH AAA 17 1317 65 HOH HOH . 
H 6 HOH AAA 18 1318 246 HOH HOH . 
H 6 HOH AAA 19 1319 100 HOH HOH . 
H 6 HOH AAA 20 1320 23 HOH HOH . 
H 6 HOH AAA 21 1321 49 HOH HOH . 
H 6 HOH AAA 22 1322 191 HOH HOH . 
H 6 HOH AAA 23 1323 245 HOH HOH . 
H 6 HOH AAA 24 1324 197 HOH HOH . 
H 6 HOH AAA 25 1325 224 HOH HOH . 
H 6 HOH AAA 26 1326 118 HOH HOH . 
H 6 HOH AAA 27 1327 42 HOH HOH . 
H 6 HOH AAA 28 1328 98 HOH HOH . 
H 6 HOH AAA 29 1329 150 HOH HOH . 
H 6 HOH AAA 30 1330 104 HOH HOH . 
H 6 HOH AAA 31 1331 55 HOH HOH . 
H 6 HOH AAA 32 1332 77 HOH HOH . 
H 6 HOH AAA 33 1333 51 HOH HOH . 
H 6 HOH AAA 34 1334 244 HOH HOH . 
H 6 HOH AAA 35 1335 22 HOH HOH . 
H 6 HOH AAA 36 1336 39 HOH HOH . 
H 6 HOH AAA 37 1337 235 HOH HOH . 
H 6 HOH AAA 38 1338 69 HOH HOH . 
H 6 HOH AAA 39 1339 33 HOH HOH . 
H 6 HOH AAA 40 1340 93 HOH HOH . 
H 6 HOH AAA 41 1341 114 HOH HOH . 
H 6 HOH AAA 42 1342 128 HOH HOH . 
H 6 HOH AAA 43 1343 185 HOH HOH . 
H 6 HOH AAA 44 1344 15 HOH HOH . 
H 6 HOH AAA 45 1345 248 HOH HOH . 
H 6 HOH AAA 46 1346 120 HOH HOH . 
H 6 HOH AAA 47 1347 193 HOH HOH . 
H 6 HOH AAA 48 1348 129 HOH HOH . 
H 6 HOH AAA 49 1349 95 HOH HOH . 
H 6 HOH AAA 50 1350 8 HOH HOH . 
H 6 HOH AAA 51 1351 24 HOH HOH . 
H 6 HOH AAA 52 1352 19 HOH HOH . 
H 6 HOH AAA 53 1353 1 HOH HOH . 
H 6 HOH AAA 54 1354 17 HOH HOH . 
H 6 HOH AAA 55 1355 102 HOH HOH . 
H 6 HOH AAA 56 1356 170 HOH HOH . 
H 6 HOH AAA 57 1357 71 HOH HOH . 
H 6 HOH AAA 58 1358 32 HOH HOH . 
H 6 HOH AAA 59 1359 40 HOH HOH . 
H 6 HOH AAA 60 1360 13 HOH HOH . 
H 6 HOH AAA 61 1361 37 HOH HOH . 
H 6 HOH AAA 62 1362 234 HOH HOH . 
H 6 HOH AAA 63 1363 83 HOH HOH . 
H 6 HOH AAA 64 1364 34 HOH HOH . 
H 6 HOH AAA 65 1365 72 HOH HOH . 
H 6 HOH AAA 66 1366 253 HOH HOH . 
H 6 HOH AAA 67 1367 188 HOH HOH . 
H 6 HOH AAA 68 1368 113 HOH HOH . 
H 6 HOH AAA 69 1369 14 HOH HOH . 
H 6 HOH AAA 70 1370 147 HOH HOH . 
H 6 HOH AAA 71 1371 2 HOH HOH . 
H 6 HOH AAA 72 1372 238 HOH HOH . 
H 6 HOH AAA 73 1373 76 HOH HOH . 
H 6 HOH AAA 74 1374 117 HOH HOH . 
H 6 HOH AAA 75 1375 53 HOH HOH . 
H 6 HOH AAA 76 1376 36 HOH HOH . 
H 6 HOH AAA 77 1377 182 HOH HOH . 
H 6 HOH AAA 78 1378 160 HOH HOH . 
H 6 HOH AAA 79 1379 52 HOH HOH . 
H 6 HOH AAA 80 1380 176 HOH HOH . 
H 6 HOH AAA 81 1381 29 HOH HOH . 
H 6 HOH AAA 82 1382 11 HOH HOH . 
H 6 HOH AAA 83 1383 58 HOH HOH . 
H 6 HOH AAA 84 1384 21 HOH HOH . 
H 6 HOH AAA 85 1385 237 HOH HOH . 
H 6 HOH AAA 86 1386 97 HOH HOH . 
H 6 HOH AAA 87 1387 43 HOH HOH . 
H 6 HOH AAA 88 1388 249 HOH HOH . 
H 6 HOH AAA 89 1389 35 HOH HOH . 
H 6 HOH AAA 90 1390 173 HOH HOH . 
H 6 HOH AAA 91 1391 26 HOH HOH . 
H 6 HOH AAA 92 1392 252 HOH HOH . 
H 6 HOH AAA 93 1393 31 HOH HOH . 
H 6 HOH AAA 94 1394 20 HOH HOH . 
H 6 HOH AAA 95 1395 48 HOH HOH . 
H 6 HOH AAA 96 1396 3 HOH HOH . 
H 6 HOH AAA 97 1397 159 HOH HOH . 
H 6 HOH AAA 98 1398 91 HOH HOH . 
H 6 HOH AAA 99 1399 84 HOH HOH . 
H 6 HOH AAA 100 1400 105 HOH HOH . 
H 6 HOH AAA 101 1401 236 HOH HOH . 
H 6 HOH AAA 102 1402 247 HOH HOH . 
H 6 HOH AAA 103 1403 57 HOH HOH . 
H 6 HOH AAA 104 1404 4 HOH HOH . 
H 6 HOH AAA 105 1405 106 HOH HOH . 
H 6 HOH AAA 106 1406 169 HOH HOH . 
H 6 HOH AAA 107 1407 107 HOH HOH . 
H 6 HOH AAA 108 1408 25 HOH HOH . 
H 6 HOH AAA 109 1409 38 HOH HOH . 
H 6 HOH AAA 110 1410 85 HOH HOH . 
H 6 HOH AAA 111 1411 66 HOH HOH . 
H 6 HOH AAA 112 1412 6 HOH HOH . 
H 6 HOH AAA 113 1413 225 HOH HOH . 
H 6 HOH AAA 114 1414 122 HOH HOH . 
H 6 HOH AAA 115 1415 108 HOH HOH . 
H 6 HOH AAA 116 1416 50 HOH HOH . 
H 6 HOH AAA 117 1417 74 HOH HOH . 
H 6 HOH AAA 118 1418 64 HOH HOH . 
H 6 HOH AAA 119 1419 90 HOH HOH . 
H 6 HOH AAA 120 1420 156 HOH HOH . 
H 6 HOH AAA 121 1421 153 HOH HOH . 
H 6 HOH AAA 122 1422 121 HOH HOH . 
H 6 HOH AAA 123 1423 88 HOH HOH . 
H 6 HOH AAA 124 1424 195 HOH HOH . 
H 6 HOH AAA 125 1425 227 HOH HOH . 
H 6 HOH AAA 126 1426 151 HOH HOH . 
H 6 HOH AAA 127 1427 211 HOH HOH . 
H 6 HOH AAA 128 1428 133 HOH HOH . 
H 6 HOH AAA 129 1429 210 HOH HOH . 
H 6 HOH AAA 130 1430 155 HOH HOH . 
H 6 HOH AAA 131 1431 9 HOH HOH . 
H 6 HOH AAA 132 1432 174 HOH HOH . 
H 6 HOH AAA 133 1433 86 HOH HOH . 
H 6 HOH AAA 134 1434 152 HOH HOH . 
H 6 HOH AAA 135 1435 145 HOH HOH . 
H 6 HOH AAA 136 1436 192 HOH HOH . 
H 6 HOH AAA 137 1437 221 HOH HOH . 
H 6 HOH AAA 138 1438 28 HOH HOH . 
H 6 HOH AAA 139 1439 115 HOH HOH . 
H 6 HOH AAA 140 1440 202 HOH HOH . 
H 6 HOH AAA 141 1441 201 HOH HOH . 
H 6 HOH AAA 142 1442 171 HOH HOH . 
H 6 HOH AAA 143 1443 136 HOH HOH . 
H 6 HOH AAA 144 1444 226 HOH HOH . 
H 6 HOH AAA 145 1445 123 HOH HOH . 
H 6 HOH AAA 146 1446 228 HOH HOH . 
H 6 HOH AAA 147 1447 130 HOH HOH . 
H 6 HOH AAA 148 1448 250 HOH HOH . 
H 6 HOH AAA 149 1449 172 HOH HOH . 
H 6 HOH AAA 150 1450 187 HOH HOH . 
H 6 HOH AAA 151 1451 112 HOH HOH . 
H 6 HOH AAA 152 1452 233 HOH HOH . 
H 6 HOH AAA 153 1453 135 HOH HOH . 
H 6 HOH AAA 154 1454 16 HOH HOH . 
H 6 HOH AAA 155 1455 194 HOH HOH . 
H 6 HOH AAA 156 1456 186 HOH HOH . 
H 6 HOH AAA 157 1457 140 HOH HOH . 
H 6 HOH AAA 158 1458 81 HOH HOH . 
H 6 HOH AAA 159 1459 168 HOH HOH . 
H 6 HOH AAA 160 1460 68 HOH HOH . 
H 6 HOH AAA 161 1461 82 HOH HOH . 
H 6 HOH AAA 162 1462 146 HOH HOH . 
H 6 HOH AAA 163 1463 7 HOH HOH . 
H 6 HOH AAA 164 1464 27 HOH HOH . 
H 6 HOH AAA 165 1465 243 HOH HOH . 
H 6 HOH AAA 166 1466 119 HOH HOH . 
H 6 HOH AAA 167 1467 204 HOH HOH . 
H 6 HOH AAA 168 1468 219 HOH HOH . 
H 6 HOH AAA 169 1469 183 HOH HOH . 
H 6 HOH AAA 170 1470 184 HOH HOH . 
H 6 HOH AAA 171 1471 229 HOH HOH . 
H 6 HOH AAA 172 1472 242 HOH HOH . 
H 6 HOH AAA 173 1473 63 HOH HOH . 
H 6 HOH AAA 174 1474 198 HOH HOH . 
H 6 HOH AAA 175 1475 208 HOH HOH . 
H 6 HOH AAA 176 1476 190 HOH HOH . 
H 6 HOH AAA 177 1477 30 HOH HOH . 
H 6 HOH AAA 178 1478 5 HOH HOH . 
H 6 HOH AAA 179 1479 62 HOH HOH . 
H 6 HOH AAA 180 1480 141 HOH HOH . 
H 6 HOH AAA 181 1481 78 HOH HOH . 
H 6 HOH AAA 182 1482 218 HOH HOH . 
H 6 HOH AAA 183 1483 165 HOH HOH . 
H 6 HOH AAA 184 1484 180 HOH HOH . 
H 6 HOH AAA 185 1485 189 HOH HOH . 
H 6 HOH AAA 186 1486 46 HOH HOH . 
H 6 HOH AAA 187 1487 167 HOH HOH . 
H 6 HOH AAA 188 1488 139 HOH HOH . 
H 6 HOH AAA 189 1489 99 HOH HOH . 
H 6 HOH AAA 190 1490 143 HOH HOH . 
H 6 HOH AAA 191 1491 137 HOH HOH . 
H 6 HOH AAA 192 1492 60 HOH HOH . 
H 6 HOH AAA 193 1493 177 HOH HOH . 
H 6 HOH AAA 194 1494 239 HOH HOH . 
H 6 HOH AAA 195 1495 45 HOH HOH . 
H 6 HOH AAA 196 1496 148 HOH HOH . 
H 6 HOH AAA 197 1497 205 HOH HOH . 
H 6 HOH AAA 198 1498 44 HOH HOH . 
H 6 HOH AAA 199 1499 70 HOH HOH . 
H 6 HOH AAA 200 1500 240 HOH HOH . 
H 6 HOH AAA 201 1501 232 HOH HOH . 
H 6 HOH AAA 202 1502 138 HOH HOH . 
H 6 HOH AAA 203 1503 196 HOH HOH . 
H 6 HOH AAA 204 1504 154 HOH HOH . 
H 6 HOH AAA 205 1505 216 HOH HOH . 
H 6 HOH AAA 206 1506 181 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -15.937 49.105 -4.926 1 79.42 ? C1 EDO 1204 AAA 1 
HETATM 2 O O1 EDO . . . E 4 -15.397 47.902 -4.39 1 63.55 ? O1 EDO 1204 AAA 1 
HETATM 3 C C2 EDO . . . E 4 -17.405 49.269 -4.69 1 73.93 ? C2 EDO 1204 AAA 1 
HETATM 4 O O2 EDO . . . E 4 -18.189 48.891 -5.809 1 72.21 ? O2 EDO 1204 AAA 1 
HETATM 5 H H11 EDO . . . E 4 -15.766 49.129 -5.889 1 73.71 ? H11 EDO 1204 AAA 1 
HETATM 6 H H12 EDO . . . E 4 -15.47 49.866 -4.521 1 74.01 ? H12 EDO 1204 AAA 1 
HETATM 7 H HO1 EDO . . . E 4 -14.57 47.859 -4.552 0 63.03 ? HO1 EDO 1204 AAA 1 
HETATM 8 H H21 EDO . . . E 4 -17.589 50.207 -4.474 1 74.77 ? H21 EDO 1204 AAA 1 
HETATM 9 H H22 EDO . . . E 4 -17.665 48.723 -3.919 1 74.75 ? H22 EDO 1204 AAA 1 
HETATM 10 H HO2 EDO . . . E 4 -18.124 49.483 -6.409 1 72.61 ? HO2 EDO 1204 AAA 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#