data_7R09 # _model_server_result.job_id X7Alg30Rv5aZhXIXYacn1g _model_server_result.datetime_utc '2024-11-18 10:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7R09 # _exptl.entry_id 7R09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R09 _cell.length_a 93.508 _cell.length_b 93.508 _cell.length_c 75.786 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 75.786 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 258 n n PA O2A NAP sing 259 n n PA O5B NAP sing 260 n n PA O3 NAP sing 261 n n O2A HOA2 NAP sing 262 n n O5B C5B NAP sing 263 n n C5B C4B NAP sing 264 n n C5B H51A NAP sing 265 n n C5B H52A NAP sing 266 n n C4B O4B NAP sing 267 n n C4B C3B NAP sing 268 n n C4B H4B NAP sing 269 n n O4B C1B NAP sing 270 n n C3B O3B NAP sing 271 n n C3B C2B NAP sing 272 n n C3B H3B NAP sing 273 n n O3B HO3A NAP sing 274 n n C2B O2B NAP sing 275 n n C2B C1B NAP sing 276 n n C2B H2B NAP sing 277 n n O2B P2B NAP sing 278 n n C1B N9A NAP sing 279 n n C1B H1B NAP sing 280 n n N9A C8A NAP sing 281 n y N9A C4A NAP sing 282 n y C8A N7A NAP doub 283 n y C8A H8A NAP sing 284 n n N7A C5A NAP sing 285 n y C5A C6A NAP sing 286 n y C5A C4A NAP doub 287 n y C6A N6A NAP sing 288 n n C6A N1A NAP doub 289 n y N6A H61A NAP sing 290 n n N6A H62A NAP sing 291 n n N1A C2A NAP sing 292 n y C2A N3A NAP doub 293 n y C2A H2A NAP sing 294 n n N3A C4A NAP sing 295 n y O3 PN NAP sing 296 n n PN O1N NAP doub 297 n n PN O2N NAP sing 298 n n PN O5D NAP sing 299 n n O5D C5D NAP sing 300 n n C5D C4D NAP sing 301 n n C5D H51N NAP sing 302 n n C5D H52N NAP sing 303 n n C4D O4D NAP sing 304 n n C4D C3D NAP sing 305 n n C4D H4D NAP sing 306 n n O4D C1D NAP sing 307 n n C3D O3D NAP sing 308 n n C3D C2D NAP sing 309 n n C3D H3D NAP sing 310 n n O3D HO3N NAP sing 311 n n C2D O2D NAP sing 312 n n C2D C1D NAP sing 313 n n C2D H2D NAP sing 314 n n O2D HO2N NAP sing 315 n n C1D N1N NAP sing 316 n n C1D H1D NAP sing 317 n n N1N C2N NAP sing 318 n y N1N C6N NAP doub 319 n y C2N C3N NAP doub 320 n y C2N H2N NAP sing 321 n n C3N C7N NAP sing 322 n n C3N C4N NAP sing 323 n y C7N O7N NAP doub 324 n n C7N N7N NAP sing 325 n n N7N H71N NAP sing 326 n n N7N H72N NAP sing 327 n n C4N C5N NAP doub 328 n y C4N H4N NAP sing 329 n n C5N C6N NAP sing 330 n y C5N H5N NAP sing 331 n n C6N H6N NAP sing 332 n n P2B O1X NAP doub 333 n n P2B O2X NAP sing 334 n n P2B O3X NAP sing 335 n n O2X HOP2 NAP sing 336 n n O3X HOP3 NAP sing 337 n n # _atom_sites.entry_id 7R09 _atom_sites.fract_transf_matrix[1][1] 0.010694 _atom_sites.fract_transf_matrix[1][2] 0.006174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 401 NAP NAP . C 3 HAI A 1 402 402 HAI UNL . D 4 HOH A 1 501 63 HOH HOH . D 4 HOH A 2 502 128 HOH HOH . D 4 HOH A 3 503 76 HOH HOH . D 4 HOH A 4 504 6 HOH HOH . D 4 HOH A 5 505 137 HOH HOH . D 4 HOH A 6 506 133 HOH HOH . D 4 HOH A 7 507 138 HOH HOH . D 4 HOH A 8 508 60 HOH HOH . D 4 HOH A 9 509 96 HOH HOH . D 4 HOH A 10 510 73 HOH HOH . D 4 HOH A 11 511 29 HOH HOH . D 4 HOH A 12 512 71 HOH HOH . D 4 HOH A 13 513 32 HOH HOH . D 4 HOH A 14 514 85 HOH HOH . D 4 HOH A 15 515 86 HOH HOH . D 4 HOH A 16 516 42 HOH HOH . D 4 HOH A 17 517 5 HOH HOH . D 4 HOH A 18 518 111 HOH HOH . D 4 HOH A 19 519 125 HOH HOH . D 4 HOH A 20 520 135 HOH HOH . D 4 HOH A 21 521 9 HOH HOH . D 4 HOH A 22 522 58 HOH HOH . D 4 HOH A 23 523 90 HOH HOH . D 4 HOH A 24 524 31 HOH HOH . D 4 HOH A 25 525 23 HOH HOH . D 4 HOH A 26 526 66 HOH HOH . D 4 HOH A 27 527 18 HOH HOH . D 4 HOH A 28 528 78 HOH HOH . D 4 HOH A 29 529 13 HOH HOH . D 4 HOH A 30 530 67 HOH HOH . D 4 HOH A 31 531 3 HOH HOH . D 4 HOH A 32 532 91 HOH HOH . D 4 HOH A 33 533 36 HOH HOH . D 4 HOH A 34 534 30 HOH HOH . D 4 HOH A 35 535 40 HOH HOH . D 4 HOH A 36 536 1 HOH HOH . D 4 HOH A 37 537 65 HOH HOH . D 4 HOH A 38 538 28 HOH HOH . D 4 HOH A 39 539 93 HOH HOH . D 4 HOH A 40 540 124 HOH HOH . D 4 HOH A 41 541 44 HOH HOH . D 4 HOH A 42 542 55 HOH HOH . D 4 HOH A 43 543 126 HOH HOH . D 4 HOH A 44 544 94 HOH HOH . D 4 HOH A 45 545 108 HOH HOH . D 4 HOH A 46 546 11 HOH HOH . D 4 HOH A 47 547 4 HOH HOH . D 4 HOH A 48 548 27 HOH HOH . D 4 HOH A 49 549 121 HOH HOH . D 4 HOH A 50 550 74 HOH HOH . D 4 HOH A 51 551 127 HOH HOH . D 4 HOH A 52 552 92 HOH HOH . D 4 HOH A 53 553 57 HOH HOH . D 4 HOH A 54 554 38 HOH HOH . D 4 HOH A 55 555 2 HOH HOH . D 4 HOH A 56 556 33 HOH HOH . D 4 HOH A 57 557 56 HOH HOH . D 4 HOH A 58 558 26 HOH HOH . D 4 HOH A 59 559 101 HOH HOH . D 4 HOH A 60 560 25 HOH HOH . D 4 HOH A 61 561 46 HOH HOH . D 4 HOH A 62 562 7 HOH HOH . D 4 HOH A 63 563 14 HOH HOH . D 4 HOH A 64 564 21 HOH HOH . D 4 HOH A 65 565 39 HOH HOH . D 4 HOH A 66 566 130 HOH HOH . D 4 HOH A 67 567 82 HOH HOH . D 4 HOH A 68 568 134 HOH HOH . D 4 HOH A 69 569 102 HOH HOH . D 4 HOH A 70 570 24 HOH HOH . D 4 HOH A 71 571 22 HOH HOH . D 4 HOH A 72 572 107 HOH HOH . D 4 HOH A 73 573 97 HOH HOH . D 4 HOH A 74 574 16 HOH HOH . D 4 HOH A 75 575 132 HOH HOH . D 4 HOH A 76 576 17 HOH HOH . D 4 HOH A 77 577 122 HOH HOH . D 4 HOH A 78 579 12 HOH HOH . D 4 HOH A 79 580 136 HOH HOH . D 4 HOH A 80 581 75 HOH HOH . D 4 HOH A 81 583 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -35.128 5.693 9.756 1 55.71 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 -36.041 6.8 10.173 1 49.15 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 -35.522 4.929 8.547 1 53.04 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 -33.62 6.227 9.574 1 52.95 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 -32.539 5.308 9.242 1 57.4 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 -31.408 6.085 8.616 1 58.77 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 -30.299 5.206 8.274 1 56.04 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 -31.755 6.839 7.321 1 58.83 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 -31.15 8.121 7.404 1 59.99 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 -31.106 5.989 6.232 1 58.52 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 -30.72 6.702 5.048 1 55.45 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 -29.856 5.557 6.983 1 56.87 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 -29.171 4.434 6.369 1 56.33 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 -29.691 3.211 6.022 1 53.19 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 -28.801 2.416 5.482 1 56.07 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 -27.635 3.165 5.441 1 58.45 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 -26.332 2.889 4.971 1 61.59 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 -25.954 1.731 4.425 1 56.68 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 -25.412 3.88 5.093 1 52.92 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 -25.78 5.041 5.646 1 54.37 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 -26.964 5.41 6.119 1 52.34 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 -27.857 4.418 5.985 1 54.59 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 -35 4.69 11.007 1 56.64 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 -35.153 5.008 12.572 1 54.51 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 -36.597 5.131 12.916 1 44.6 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 -34.265 6.186 12.819 1 57.94 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 -34.529 3.706 13.266 1 53.59 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 -33.219 3.253 12.781 1 56.78 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 -32.975 1.805 13.152 1 50.33 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 -33.103 1.681 14.58 1 50.86 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 -33.908 0.729 12.565 1 49.32 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 -33.268 -0.538 12.431 1 52.48 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 -34.959 0.576 13.662 1 52.08 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 -35.594 -0.689 13.615 1 54.72 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 -34.051 0.672 14.883 1 53.42 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 -34.739 1.054 16.14 1 51.02 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 -34.323 0.474 17.35 1 43.06 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 -34.88 0.932 18.558 1 50.15 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 -34.52 0.335 19.901 1 47.82 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 -35.233 0.591 20.869 1 55.41 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 -33.451 -0.446 19.993 1 51.59 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 -35.825 1.981 18.521 1 46.35 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 -36.202 2.544 17.31 1 48.43 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 -35.708 2.019 16.13 1 48.65 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 -31.935 7.351 4.151 1 64.27 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 -32.806 6.175 3.76 1 58.13 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 -32.747 8.372 4.921 1 54.2 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 -31.188 7.955 2.962 1 57.46 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 708 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #