data_7R0W # _model_server_result.job_id zS5U0cK2nIn6WWWBv8Dipw _model_server_result.datetime_utc '2025-03-06 09:16:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":301}' # _entry.id 7R0W # _exptl.entry_id 7R0W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R0W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 U N N ? 10 DA N N ? 10 EA N N ? 10 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 125 D CYS 125 1_555 L SG CYS 140 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 Q SG CYS 125 L CYS 125 1_555 Q SG CYS 140 L CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 D SG CYS 66 K CYS 22 1_555 AA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale2 D SG CYS 69 K CYS 25 1_555 AA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? covale ? covale3 K SG CYS 66 C CYS 22 1_555 MA CAB HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale4 K SG CYS 69 C CYS 25 1_555 MA C3C HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? covale ? covale5 K SG CYS 69 C CYS 25 1_555 MA CAC HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc1 B NE2 HIS 93 I HIS 93 1_555 S FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 B NE2 HIS 107 I HIS 107 1_555 U FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc3 B NE2 HIS 194 I HIS 194 1_555 S FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 B NE2 HIS 209 I HIS 209 1_555 U FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc5 T FE HEM . I HEM 302 1_555 TA O HOH . I HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 D NE2 HIS 70 K HIS 26 1_555 AA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc7 I NE2 HIS 93 A HIS 93 1_555 EA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 I NE2 HIS 107 A HIS 107 1_555 DA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc9 I NE2 HIS 194 A HIS 194 1_555 EA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc10 I NE2 HIS 209 A HIS 209 1_555 DA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc11 HA FE HEM . B HEM 301 1_555 UA O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc12 K N TYR 45 C TYR 1 1_555 MA FE HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc13 K NE2 HIS 70 C HIS 26 1_555 MA FE HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc14 L SG CYS 138 D CYS 138 1_555 NA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc15 L ND1 HIS 141 D HIS 141 1_555 NA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc16 Q SG CYS 120 L CYS 120 1_555 SA FE1 FES . L FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc17 Q NE2 HIS 122 L HIS 122 1_555 SA FE2 FES . L FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc18 Q ND1 HIS 141 L HIS 141 1_555 SA FE2 FES . L FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 703 n n CHA C4D HEM doub 704 n n CHA HHA HEM sing 705 n n CHB C4A HEM sing 706 n n CHB C1B HEM doub 707 n n CHB HHB HEM sing 708 n n CHC C4B HEM sing 709 n n CHC C1C HEM doub 710 n n CHC HHC HEM sing 711 n n CHD C4C HEM doub 712 n n CHD C1D HEM sing 713 n n CHD HHD HEM sing 714 n n C1A C2A HEM doub 715 n y C1A NA HEM sing 716 n y C2A C3A HEM sing 717 n y C2A CAA HEM sing 718 n n C3A C4A HEM doub 719 n y C3A CMA HEM sing 720 n n C4A NA HEM sing 721 n y CMA HMA HEM sing 722 n n CMA HMAA HEM sing 723 n n CMA HMAB HEM sing 724 n n CAA CBA HEM sing 725 n n CAA HAA HEM sing 726 n n CAA HAAA HEM sing 727 n n CBA CGA HEM sing 728 n n CBA HBA HEM sing 729 n n CBA HBAA HEM sing 730 n n CGA O1A HEM doub 731 n n CGA O2A HEM sing 732 n n C1B C2B HEM sing 733 n n C1B NB HEM sing 734 n n C2B C3B HEM doub 735 n n C2B CMB HEM sing 736 n n C3B C4B HEM sing 737 n n C3B CAB HEM sing 738 n n C4B NB HEM doub 739 n n CMB HMB HEM sing 740 n n CMB HMBA HEM sing 741 n n CMB HMBB HEM sing 742 n n CAB CBB HEM doub 743 n n CAB HAB HEM sing 744 n n CBB HBB HEM sing 745 n n CBB HBBA HEM sing 746 n n C1C C2C HEM sing 747 n y C1C NC HEM sing 748 n y C2C C3C HEM doub 749 n y C2C CMC HEM sing 750 n n C3C C4C HEM sing 751 n y C3C CAC HEM sing 752 n n C4C NC HEM sing 753 n y CMC HMC HEM sing 754 n n CMC HMCA HEM sing 755 n n CMC HMCB HEM sing 756 n n CAC CBC HEM doub 757 n n CAC HAC HEM sing 758 n n CBC HBC HEM sing 759 n n CBC HBCA HEM sing 760 n n C1D C2D HEM sing 761 n n C1D ND HEM doub 762 n n C2D C3D HEM doub 763 n n C2D CMD HEM sing 764 n n C3D C4D HEM sing 765 n n C3D CAD HEM sing 766 n n C4D ND HEM sing 767 n n CMD HMD HEM sing 768 n n CMD HMDA HEM sing 769 n n CMD HMDB HEM sing 770 n n CAD CBD HEM sing 771 n n CAD HAD HEM sing 772 n n CAD HADA HEM sing 773 n n CBD CGD HEM sing 774 n n CBD HBD HEM sing 775 n n CBD HBDA HEM sing 776 n n CGD O1D HEM doub 777 n n CGD O2D HEM sing 778 n n O2A H2A HEM sing 779 n n O2D H2D HEM sing 780 n n FE NA HEM sing 781 n n FE NB HEM sing 782 n n FE NC HEM sing 783 n n FE ND HEM sing 784 n n # _atom_sites.entry_id 7R0W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM I 1 301 301 HEM HEM . T 10 HEM I 1 302 302 HEM HEM . U 10 HEM I 1 303 303 HEM HEM . V 11 PGV I 1 304 304 PGV PGV . W 12 ECH I 1 305 305 ECH ECH . X 13 PL9 J 1 201 201 PL9 PL9 . Y 14 CLA J 1 202 202 CLA CLA . Z 11 PGV J 1 203 203 PGV PGV . AA 15 HEC K 1 301 301 HEC HEC . BA 16 LMG N 1 101 101 LMG LMG . CA 17 6PL P 1 101 101 6PL 6PL . DA 10 HEM A 1 301 302 HEM HEM . EA 10 HEM A 1 302 303 HEM HEM . FA 13 PL9 A 1 303 304 PL9 PL9 . GA 12 ECH A 1 304 305 ECH ECH . HA 10 HEM B 1 301 301 HEM HEM . IA 14 CLA B 1 302 201 CLA CLA . JA 18 2WA B 1 303 202 2WA 2WA . KA 11 PGV B 1 304 203 PGV PGV . LA 11 PGV C 1 301 301 PGV PGV . MA 15 HEC C 1 302 302 HEC HEC . NA 19 FES D 1 201 201 FES FES . OA 20 SQD D 1 202 202 SQD SQD . PA 21 LFA E 1 101 101 LFA LFA . QA 17 6PL H 1 101 101 6PL 6PL . RA 20 SQD L 1 201 201 SQD SQD . SA 19 FES L 1 202 202 FES FES . TA 22 HOH I 1 401 401 HOH HOH . UA 22 HOH B 1 401 401 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . S 10 97.951 99.579 95.887 1 46.31 ? CHA HEM 301 I 1 HETATM 2 C CHB HEM . . . S 10 101.627 102.41 97.284 1 31.01 ? CHB HEM 301 I 1 HETATM 3 C CHC HEM . . . S 10 99.232 103.414 101.377 1 46.95 ? CHC HEM 301 I 1 HETATM 4 C CHD HEM . . . S 10 95.48 100.737 99.892 1 50.45 ? CHD HEM 301 I 1 HETATM 5 C C1A HEM . . . S 10 99.134 100.281 95.891 1 53.84 ? C1A HEM 301 I 1 HETATM 6 C C2A HEM . . . S 10 100.091 100.334 94.81 1 39.17 ? C2A HEM 301 I 1 HETATM 7 C C3A HEM . . . S 10 101.104 101.111 95.188 1 43.64 ? C3A HEM 301 I 1 HETATM 8 C C4A HEM . . . S 10 100.83 101.582 96.529 1 49.16 ? C4A HEM 301 I 1 HETATM 9 C CMA HEM . . . S 10 102.347 101.446 94.341 1 54.53 ? CMA HEM 301 I 1 HETATM 10 C CAA HEM . . . S 10 99.944 99.612 93.456 1 44.29 ? CAA HEM 301 I 1 HETATM 11 C CBA HEM . . . S 10 100.47 98.189 93.588 1 52.13 ? CBA HEM 301 I 1 HETATM 12 C CGA HEM . . . S 10 99.328 97.209 93.614 1 53.44 ? CGA HEM 301 I 1 HETATM 13 O O1A HEM . . . S 10 99.449 96.178 94.32 1 61.76 ? O1A HEM 301 I 1 HETATM 14 O O2A HEM . . . S 10 98.296 97.451 92.944 1 58.14 ? O2A HEM 301 I 1 HETATM 15 C C1B HEM . . . S 10 101.291 102.941 98.507 1 38.82 ? C1B HEM 301 I 1 HETATM 16 C C2B HEM . . . S 10 102.082 103.883 99.267 1 48.36 ? C2B HEM 301 I 1 HETATM 17 C C3B HEM . . . S 10 101.411 104.168 100.396 1 44.25 ? C3B HEM 301 I 1 HETATM 18 C C4B HEM . . . S 10 100.187 103.402 100.386 1 52.48 ? C4B HEM 301 I 1 HETATM 19 C CMB HEM . . . S 10 103.443 104.429 98.784 1 45.42 ? CMB HEM 301 I 1 HETATM 20 C CAB HEM . . . S 10 101.79 105.093 101.575 1 47.87 ? CAB HEM 301 I 1 HETATM 21 C CBB HEM . . . S 10 102.94 105.767 101.629 1 62.77 ? CBB HEM 301 I 1 HETATM 22 C C1C HEM . . . S 10 97.993 102.82 101.313 1 47.03 ? C1C HEM 301 I 1 HETATM 23 C C2C HEM . . . S 10 96.917 102.994 102.263 1 42.77 ? C2C HEM 301 I 1 HETATM 24 C C3C HEM . . . S 10 95.88 102.26 101.852 1 43.39 ? C3C HEM 301 I 1 HETATM 25 C C4C HEM . . . S 10 96.266 101.591 100.629 1 51.96 ? C4C HEM 301 I 1 HETATM 26 C CMC HEM . . . S 10 96.993 103.888 103.519 1 51.77 ? CMC HEM 301 I 1 HETATM 27 C CAC HEM . . . S 10 94.504 102.112 102.534 1 49.36 ? CAC HEM 301 I 1 HETATM 28 C CBC HEM . . . S 10 94.41 101.96 103.858 1 54.17 ? CBC HEM 301 I 1 HETATM 29 C C1D HEM . . . S 10 95.831 100.171 98.69 1 45.14 ? C1D HEM 301 I 1 HETATM 30 C C2D HEM . . . S 10 95.032 99.242 97.922 1 32.92 ? C2D HEM 301 I 1 HETATM 31 C C3D HEM . . . S 10 95.715 98.925 96.822 1 34.77 ? C3D HEM 301 I 1 HETATM 32 C C4D HEM . . . S 10 96.97 99.64 96.849 1 39.96 ? C4D HEM 301 I 1 HETATM 33 C CMD HEM . . . S 10 93.638 98.721 98.327 1 46.19 ? CMD HEM 301 I 1 HETATM 34 C CAD HEM . . . S 10 95.272 97.969 95.698 1 49.87 ? CAD HEM 301 I 1 HETATM 35 C CBD HEM . . . S 10 95.919 96.613 95.937 1 51.6 ? CBD HEM 301 I 1 HETATM 36 C CGD HEM . . . S 10 95.698 95.722 94.747 1 53.06 ? CGD HEM 301 I 1 HETATM 37 O O1D HEM . . . S 10 96.698 95.373 94.072 1 53.3 ? O1D HEM 301 I 1 HETATM 38 O O2D HEM . . . S 10 94.527 95.358 94.476 1 62.08 ? O2D HEM 301 I 1 HETATM 39 N NA HEM . . . S 10 99.618 101.053 96.926 1 65.47 ? NA HEM 301 I 1 HETATM 40 N NB HEM . . . S 10 100.142 102.669 99.219 1 57.88 ? NB HEM 301 I 1 HETATM 41 N NC HEM . . . S 10 97.562 101.955 100.328 1 46.87 ? NC HEM 301 I 1 HETATM 42 N ND HEM . . . S 10 97.009 100.391 98.006 1 53.04 ? ND HEM 301 I 1 HETATM 43 FE FE HEM . . . S 10 98.661 101.369 98.706 1 89.77 ? FE HEM 301 I 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #