data_7R1T # _model_server_result.job_id n48Yez_IcAQEBySVOU9oeA _model_server_result.datetime_utc '2025-06-26 13:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7R1T # _exptl.entry_id 7R1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.432 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R1T _cell.length_a 168.216 _cell.length_b 168.216 _cell.length_c 51.505 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 66 B CYS 74 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 B SG CYS 69 B CYS 77 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 B NE2 HIS 75 B HIS 83 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 B SG CYS 82 B CYS 90 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc5 B SG CYS 109 B CYS 117 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 B SG CYS 112 B CYS 120 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B SG CYS 120 B CYS 128 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 B SG CYS 122 B CYS 130 1_555 H ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C16 H20 N6 O5 S' _chem_comp.formula_weight 408.432 _chem_comp.id 6NR _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' 6NR sing 1 n n NN CN 6NR trip 2 n n N6 C6 6NR sing 3 n n CN C7 6NR sing 4 n n C7 C5 6NR sing 5 n y C7 C8 6NR doub 6 n y C6 C5 6NR doub 7 n y C6 N1 6NR sing 8 n y C2' C1' 6NR sing 9 n n C2' C3' 6NR sing 10 n n C5 C4 6NR sing 11 n y C8 N9 6NR sing 12 n y N1 C2 6NR doub 13 n y C4 N9 6NR sing 14 n y C4 N3 6NR doub 15 n y N9 C1' 6NR sing 16 n n C2 N3 6NR sing 17 n y O3' C3' 6NR sing 18 n n C1' O4' 6NR sing 19 n n C3' C4' 6NR sing 20 n n O4' C4' 6NR sing 21 n n C4' C5' 6NR sing 22 n n C5' SD 6NR sing 23 n n SD CG 6NR sing 24 n n CB CG 6NR sing 25 n n CB CA 6NR sing 26 n n CA N 6NR sing 27 n n CA C 6NR sing 28 n n C OXT 6NR doub 29 n n C O 6NR sing 30 n n C8 H1 6NR sing 31 n n O H2 6NR sing 32 n n CA H3 6NR sing 33 n n N H4 6NR sing 34 n n N H5 6NR sing 35 n n CB H7 6NR sing 36 n n CB H8 6NR sing 37 n n CG H9 6NR sing 38 n n CG H10 6NR sing 39 n n C5' H11 6NR sing 40 n n C5' H12 6NR sing 41 n n C4' H13 6NR sing 42 n n C3' H14 6NR sing 43 n n O3' H15 6NR sing 44 n n C2' H16 6NR sing 45 n n O2' H17 6NR sing 46 n n C1' H18 6NR sing 47 n n C2 H19 6NR sing 48 n n N6 H20 6NR sing 49 n n N6 H21 6NR sing 50 n n # _atom_sites.entry_id 7R1T _atom_sites.fract_transf_matrix[1][1] 0.005945 _atom_sites.fract_transf_matrix[1][2] 0.003432 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 6NR A 1 301 1 6NR 6NR . D 4 PO4 A 1 302 2 PO4 PO4 . E 4 PO4 A 1 303 3 PO4 PO4 . F 5 MES A 1 304 6 MES MES . G 6 ZN B 1 201 4 ZN ZN . H 6 ZN B 1 202 5 ZN ZN . I 7 HOH A 1 401 6 HOH HOH . I 7 HOH A 2 402 7 HOH HOH . I 7 HOH A 3 403 26 HOH HOH . I 7 HOH A 4 404 16 HOH HOH . I 7 HOH A 5 405 12 HOH HOH . I 7 HOH A 6 406 3 HOH HOH . I 7 HOH A 7 407 22 HOH HOH . I 7 HOH A 8 408 1 HOH HOH . I 7 HOH A 9 409 4 HOH HOH . I 7 HOH A 10 410 13 HOH HOH . I 7 HOH A 11 411 14 HOH HOH . I 7 HOH A 12 412 11 HOH HOH . I 7 HOH A 13 413 5 HOH HOH . I 7 HOH A 14 414 24 HOH HOH . I 7 HOH A 15 415 8 HOH HOH . I 7 HOH A 16 416 17 HOH HOH . I 7 HOH A 17 417 27 HOH HOH . I 7 HOH A 18 418 28 HOH HOH . I 7 HOH A 19 419 2 HOH HOH . I 7 HOH A 20 420 29 HOH HOH . J 7 HOH B 1 301 10 HOH HOH . J 7 HOH B 2 302 18 HOH HOH . J 7 HOH B 3 303 9 HOH HOH . J 7 HOH B 4 304 20 HOH HOH . J 7 HOH B 5 305 25 HOH HOH . J 7 HOH B 6 306 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6NR . . . C 3 116.981 65.066 22.717 1 43.57 ? C4 6NR 301 A 1 HETATM 2 C C5 6NR . . . C 3 117.785 64.463 21.778 1 42.63 ? C5 6NR 301 A 1 HETATM 3 C C6 6NR . . . C 3 119.047 64.021 22.124 1 45.21 ? C6 6NR 301 A 1 HETATM 4 N N1 6NR . . . C 3 119.497 64.174 23.355 1 46.9 ? N1 6NR 301 A 1 HETATM 5 C C7 6NR . . . C 3 117.092 64.416 20.564 1 43 ? C7 6NR 301 A 1 HETATM 6 C C8 6NR . . . C 3 115.858 64.995 20.768 1 44.33 ? C8 6NR 301 A 1 HETATM 7 N N3 6NR . . . C 3 117.431 65.224 23.976 1 44.37 ? N3 6NR 301 A 1 HETATM 8 O OXT 6NR . . . C 3 106.399 67.907 26.344 1 44.95 ? OXT 6NR 301 A 1 HETATM 9 C C 6NR . . . C 3 107.079 67.159 27.023 1 48.99 ? C 6NR 301 A 1 HETATM 10 O O 6NR . . . C 3 106.733 66.894 28.23 1 48.2 ? O 6NR 301 A 1 HETATM 11 C CA 6NR . . . C 3 108.325 66.555 26.451 1 44.84 ? CA 6NR 301 A 1 HETATM 12 N N 6NR . . . C 3 108.472 65.181 26.944 1 41.88 ? N 6NR 301 A 1 HETATM 13 C CB 6NR . . . C 3 108.228 66.55 24.892 1 36.94 ? CB 6NR 301 A 1 HETATM 14 C CG 6NR . . . C 3 109.563 66.049 24.297 1 42.16 ? CG 6NR 301 A 1 HETATM 15 S SD 6NR . . . C 3 109.705 66.351 22.51 1 41.21 ? SD 6NR 301 A 1 HETATM 16 C C5' 6NR . . . C 3 111.248 65.465 22.085 1 40.51 ? C5' 6NR 301 A 1 HETATM 17 C C4' 6NR . . . C 3 112.387 66.04 22.882 1 37.85 ? C4' 6NR 301 A 1 HETATM 18 C C3' 6NR . . . C 3 112.814 67.463 22.474 1 38.98 ? C3' 6NR 301 A 1 HETATM 19 O O3' 6NR . . . C 3 112.797 68.35 23.611 1 40.53 ? O3' 6NR 301 A 1 HETATM 20 C C2' 6NR . . . C 3 114.244 67.275 21.962 1 40.99 ? C2' 6NR 301 A 1 HETATM 21 O O2' 6NR . . . C 3 115.062 68.402 22.351 1 45.49 ? O2' 6NR 301 A 1 HETATM 22 O O4' 6NR . . . C 3 113.552 65.19 22.711 1 43.32 ? O4' 6NR 301 A 1 HETATM 23 C C1' 6NR . . . C 3 114.653 66.044 22.733 1 42.79 ? C1' 6NR 301 A 1 HETATM 24 N N9 6NR . . . C 3 115.78 65.408 22.102 1 44.14 ? N9 6NR 301 A 1 HETATM 25 C C2 6NR . . . C 3 118.655 64.77 24.204 1 46.6 ? C2 6NR 301 A 1 HETATM 26 C CN 6NR . . . C 3 117.59 63.86 19.333 1 45.65 ? CN 6NR 301 A 1 HETATM 27 N NN 6NR . . . C 3 117.98 63.425 18.371 1 53.02 ? NN 6NR 301 A 1 HETATM 28 N N6 6NR . . . C 3 119.838 63.432 21.216 1 44.78 ? N6 6NR 301 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #