data_7R1U
#
_model_server_result.job_id            vnF5RFZlUMeAjIdC0oI9rQ 
_model_server_result.datetime_utc      '2025-06-25 11:48:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r1u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    7R1U 
#
_exptl.entry_id    7R1U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.414 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7R1U 
_cell.length_a            168.011 
_cell.length_b            168.011 
_cell.length_c            52.085 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R1U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 66 B CYS 74 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B SG CYS 69 B CYS 77 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 B NE2 HIS 75 B HIS 83 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 B SG CYS 82 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 B SG CYS 109 B CYS 117 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc6 B SG CYS 112 B CYS 120 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc7 B SG CYS 120 B CYS 128 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc8 B SG CYS 122 B CYS 130 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
#
_chem_comp.formula           'C16 H25 N7 O5' 
_chem_comp.formula_weight    395.414 
_chem_comp.id                4IK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 4IK doub 1 n n 
C CA 4IK sing 2 n n 
C OXT 4IK sing 3 n n 
CA N 4IK sing 4 n n 
N H 4IK sing 5 n n 
N H2 4IK sing 6 n n 
C6 N1 4IK doub 7 n y 
N1 C2 4IK sing 8 n y 
N3 C2 4IK doub 9 n y 
C2 H2A 4IK sing 10 n n 
C4 N3 4IK sing 11 n y 
N9 C4 4IK sing 12 n y 
C5 C4 4IK doub 13 n y 
N7 C5 4IK sing 14 n y 
C5 C6 4IK sing 15 n y 
N6 C6 4IK sing 16 n n 
N6 H62 4IK sing 17 n n 
N6 H61 4IK sing 18 n n 
C8 N7 4IK doub 19 n y 
C8 N9 4IK sing 20 n y 
C8 H8 4IK sing 21 n n 
N9 C1' 4IK sing 22 n n 
CB CA 4IK sing 23 n n 
CA HA 4IK sing 24 n n 
CG CB 4IK sing 25 n n 
CB HB2 4IK sing 26 n n 
CB HB3 4IK sing 27 n n 
NZ CE 4IK sing 28 n n 
NZ HZ2 4IK sing 29 n n 
NZ HZ3 4IK sing 30 n n 
C3' O3' 4IK sing 31 n n 
O3' HO3' 4IK sing 32 n n 
C2' O2' 4IK sing 33 n n 
O2' HO2' 4IK sing 34 n n 
CE CD 4IK sing 35 n n 
CE HE3 4IK sing 36 n n 
CE HE2 4IK sing 37 n n 
CD CG 4IK sing 38 n n 
CG HG2 4IK sing 39 n n 
CG HG3 4IK sing 40 n n 
CD C5' 4IK sing 41 n n 
C5' C4' 4IK sing 42 n n 
C5' "H5''" 4IK sing 43 n n 
C5' H5' 4IK sing 44 n n 
C4' O4' 4IK sing 45 n n 
O4' C1' 4IK sing 46 n n 
CD HD 4IK sing 47 n n 
C4' C3' 4IK sing 48 n n 
C3' C2' 4IK sing 49 n n 
C3' H3' 4IK sing 50 n n 
C2' C1' 4IK sing 51 n n 
C2' H2' 4IK sing 52 n n 
C4' H4' 4IK sing 53 n n 
C1' H1' 4IK sing 54 n n 
OXT HXT 4IK sing 55 n n 
#
_atom_sites.entry_id                     7R1U 
_atom_sites.fract_transf_matrix[1][1]    0.005952 
_atom_sites.fract_transf_matrix[1][2]    0.003436 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 4IK A 1 301 1 4IK 4IK . 
D 4 GTA A 1 302 2 GTA GTA . 
E 5 MES A 1 303 5 MES MES . 
F 6 ZN B 1 201 3 ZN ZN . 
G 6 ZN B 1 202 4 ZN ZN . 
H 7 HOH A 1 401 26 HOH HOH . 
H 7 HOH A 2 402 23 HOH HOH . 
H 7 HOH A 3 403 14 HOH HOH . 
H 7 HOH A 4 404 16 HOH HOH . 
H 7 HOH A 5 405 21 HOH HOH . 
H 7 HOH A 6 406 32 HOH HOH . 
H 7 HOH A 7 407 30 HOH HOH . 
H 7 HOH A 8 408 31 HOH HOH . 
H 7 HOH A 9 409 28 HOH HOH . 
H 7 HOH A 10 410 2 HOH HOH . 
H 7 HOH A 11 411 17 HOH HOH . 
H 7 HOH A 12 412 3 HOH HOH . 
H 7 HOH A 13 413 22 HOH HOH . 
H 7 HOH A 14 414 20 HOH HOH . 
H 7 HOH A 15 415 8 HOH HOH . 
H 7 HOH A 16 416 13 HOH HOH . 
H 7 HOH A 17 417 18 HOH HOH . 
H 7 HOH A 18 418 33 HOH HOH . 
H 7 HOH A 19 419 12 HOH HOH . 
H 7 HOH A 20 420 27 HOH HOH . 
H 7 HOH A 21 421 15 HOH HOH . 
H 7 HOH A 22 422 19 HOH HOH . 
H 7 HOH A 23 423 25 HOH HOH . 
H 7 HOH A 24 424 1 HOH HOH . 
H 7 HOH A 25 425 11 HOH HOH . 
H 7 HOH A 26 426 10 HOH HOH . 
H 7 HOH A 27 427 9 HOH HOH . 
I 7 HOH B 1 301 7 HOH HOH . 
I 7 HOH B 2 302 24 HOH HOH . 
I 7 HOH B 3 303 4 HOH HOH . 
I 7 HOH B 4 304 29 HOH HOH . 
I 7 HOH B 5 305 6 HOH HOH . 
I 7 HOH B 6 306 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 4IK . . . C 3 26.663 85.204 19.212 1 61.9 ? C 4IK 301 A 1 
HETATM 2 N N 4IK . . . C 3 27.97 86.317 17.49 1 69.04 ? N 4IK 301 A 1 
HETATM 3 O O 4IK . . . C 3 26.761 86.181 20.015 1 60.32 ? O 4IK 301 A 1 
HETATM 4 N N1 4IK . . . C 3 30.774 74.226 14.772 1 63.61 ? N1 4IK 301 A 1 
HETATM 5 C C2 4IK . . . C 3 30.937 75.187 15.68 1 68.19 ? C2 4IK 301 A 1 
HETATM 6 N N3 4IK . . . C 3 30.662 76.488 15.562 1 60.24 ? N3 4IK 301 A 1 
HETATM 7 C C4 4IK . . . C 3 30.155 76.865 14.36 1 70.32 ? C4 4IK 301 A 1 
HETATM 8 C C5 4IK . . . C 3 29.961 75.933 13.379 1 68.99 ? C5 4IK 301 A 1 
HETATM 9 C C6 4IK . . . C 3 30.283 74.585 13.604 1 68.14 ? C6 4IK 301 A 1 
HETATM 10 N N6 4IK . . . C 3 30.1 73.656 12.655 1 58.77 ? N6 4IK 301 A 1 
HETATM 11 N N7 4IK . . . C 3 29.447 76.56 12.279 1 62.63 ? N7 4IK 301 A 1 
HETATM 12 C C8 4IK . . . C 3 29.328 77.874 12.59 1 62.3 ? C8 4IK 301 A 1 
HETATM 13 N N9 4IK . . . C 3 29.757 78.073 13.88 1 70.94 ? N9 4IK 301 A 1 
HETATM 14 C CA 4IK . . . C 3 26.807 85.426 17.75 1 69.92 ? CA 4IK 301 A 1 
HETATM 15 C CB 4IK . . . C 3 27.025 84.076 17.051 1 64.23 ? CB 4IK 301 A 1 
HETATM 16 N NZ 4IK . . . C 3 27.454 85.857 13.639 1 69.11 ? NZ 4IK 301 A 1 
HETATM 17 O O3' 4IK . . . C 3 31.049 82.356 15.27 1 66.71 ? O3' 4IK 301 A 1 
HETATM 18 O O2' 4IK . . . C 3 32.09 80.191 14.417 1 64.23 ? O2' 4IK 301 A 1 
HETATM 19 C CE 4IK . . . C 3 26.946 84.587 14.102 1 72.57 ? CE 4IK 301 A 1 
HETATM 20 C CG 4IK . . . C 3 28.299 84.152 16.151 1 66.5 ? CG 4IK 301 A 1 
HETATM 21 C C5' 4IK . . . C 3 27.739 82.267 14.598 1 60.53 ? C5' 4IK 301 A 1 
HETATM 22 O O4' 4IK . . . C 3 28.555 79.978 14.605 1 64.21 ? O4' 4IK 301 A 1 
HETATM 23 C CD 4IK . . . C 3 28.09 83.758 14.687 1 75.43 ? CD 4IK 301 A 1 
HETATM 24 C C3' 4IK . . . C 3 30.158 81.7 14.331 1 73.46 ? C3' 4IK 301 A 1 
HETATM 25 C C2' 4IK . . . C 3 30.745 80.336 13.9 1 80.35 ? C2' 4IK 301 A 1 
HETATM 26 C C4' 4IK . . . C 3 28.839 81.326 15.028 1 65.31 ? C4' 4IK 301 A 1 
HETATM 27 C C1' 4IK . . . C 3 29.806 79.357 14.605 1 70.76 ? C1' 4IK 301 A 1 
HETATM 28 O OXT 4IK . . . C 3 26.436 84.032 19.655 1 54.88 ? OXT 4IK 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           794 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           28 
#