data_7R1U
#
_model_server_result.job_id            Sp0V224724qqPO6odmkRvg 
_model_server_result.datetime_utc      '2025-06-25 11:58:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r1u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    7R1U 
#
_exptl.entry_id    7R1U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              787.441 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7R1U 
_cell.length_a            168.011 
_cell.length_b            168.011 
_cell.length_c            52.085 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R1U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 66 B CYS 74 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B SG CYS 69 B CYS 77 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc3 B NE2 HIS 75 B HIS 83 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 B SG CYS 82 B CYS 90 1_555 F ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc5 B SG CYS 109 B CYS 117 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc6 B SG CYS 112 B CYS 120 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc7 B SG CYS 120 B CYS 128 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc8 B SG CYS 122 B CYS 130 1_555 G ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
#
_chem_comp.formula           'C21 H30 N10 O17 P3 1' 
_chem_comp.formula_weight    787.441 
_chem_comp.id                GTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     7-METHYL-GPPPA 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C2 GTA sing 184 n n 
N2 HN21 GTA sing 185 n n 
N2 HN22 GTA sing 186 n n 
O6 C6 GTA doub 187 n n 
C6 C5 GTA sing 188 n n 
C6 N1 GTA sing 189 n n 
C5 N7 GTA sing 190 n y 
C5 C4 GTA doub 191 n y 
N7 C7 GTA sing 192 n n 
N7 C8 GTA doub 193 n y 
C7 H71 GTA sing 194 n n 
C7 H72 GTA sing 195 n n 
C7 H73 GTA sing 196 n n 
C8 N9 GTA sing 197 n y 
C8 H8 GTA sing 198 n n 
N9 C4 GTA sing 199 n y 
N9 C1A GTA sing 200 n n 
C4 N3 GTA sing 201 n n 
N3 C2 GTA doub 202 n n 
C2 N1 GTA sing 203 n n 
N1 HN1 GTA sing 204 n n 
O3A C3A GTA sing 205 n n 
O3A HO3A GTA sing 206 n n 
C1A C2A GTA sing 207 n n 
C1A O4A GTA sing 208 n n 
C1A H1A GTA sing 209 n n 
C2A C3A GTA sing 210 n n 
C2A O2A GTA sing 211 n n 
C2A H2A GTA sing 212 n n 
C3A C4A GTA sing 213 n n 
C3A H3A GTA sing 214 n n 
C4A C5A GTA sing 215 n n 
C4A O4A GTA sing 216 n n 
C4A H4A GTA sing 217 n n 
C5A O15 GTA sing 218 n n 
C5A H5A1 GTA sing 219 n n 
C5A H5A2 GTA sing 220 n n 
O2A HO2A GTA sing 221 n n 
P1 O11 GTA doub 222 n n 
P1 O12 GTA sing 223 n n 
P1 O13 GTA sing 224 n n 
P1 O15 GTA sing 225 n n 
O12 H122 GTA sing 226 n n 
O13 P2 GTA sing 227 n n 
P2 O22 GTA sing 228 n n 
P2 O21 GTA doub 229 n n 
P2 O23 GTA sing 230 n n 
O22 H222 GTA sing 231 n n 
O23 P3 GTA sing 232 n n 
P3 O32 GTA sing 233 n n 
P3 O31 GTA doub 234 n n 
P3 O33 GTA sing 235 n n 
O32 H322 GTA sing 236 n n 
O33 C5B GTA sing 237 n n 
C5B C4B GTA sing 238 n n 
C5B H5B1 GTA sing 239 n n 
C5B H5B2 GTA sing 240 n n 
C4B O4B GTA sing 241 n n 
C4B C3B GTA sing 242 n n 
C4B H4B GTA sing 243 n n 
O4B C1B GTA sing 244 n n 
C3B O3B GTA sing 245 n n 
C3B C2B GTA sing 246 n n 
C3B H3B GTA sing 247 n n 
O3B HO3B GTA sing 248 n n 
C2B O2B GTA sing 249 n n 
C2B C1B GTA sing 250 n n 
C2B H2B GTA sing 251 n n 
O2B HO2B GTA sing 252 n n 
C1B N9C GTA sing 253 n n 
C1B H1B GTA sing 254 n n 
N9C C8C GTA sing 255 n y 
N9C C4C GTA sing 256 n y 
C8C N7C GTA doub 257 n y 
C8C H8C GTA sing 258 n n 
N7C C5C GTA sing 259 n y 
C5C C6C GTA doub 260 n y 
C5C C4C GTA sing 261 n y 
C6C N6C GTA sing 262 n n 
C6C N1C GTA sing 263 n y 
N6C HN61 GTA sing 264 n n 
N6C HN62 GTA sing 265 n n 
N1C C2C GTA doub 266 n y 
C2C N3C GTA sing 267 n y 
C2C H2C GTA sing 268 n n 
N3C C4C GTA doub 269 n y 
#
_atom_sites.entry_id                     7R1U 
_atom_sites.fract_transf_matrix[1][1]    0.005952 
_atom_sites.fract_transf_matrix[1][2]    0.003436 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 4IK A 1 301 1 4IK 4IK . 
D 4 GTA A 1 302 2 GTA GTA . 
E 5 MES A 1 303 5 MES MES . 
F 6 ZN B 1 201 3 ZN ZN . 
G 6 ZN B 1 202 4 ZN ZN . 
H 7 HOH A 1 401 26 HOH HOH . 
H 7 HOH A 2 402 23 HOH HOH . 
H 7 HOH A 3 403 14 HOH HOH . 
H 7 HOH A 4 404 16 HOH HOH . 
H 7 HOH A 5 405 21 HOH HOH . 
H 7 HOH A 6 406 32 HOH HOH . 
H 7 HOH A 7 407 30 HOH HOH . 
H 7 HOH A 8 408 31 HOH HOH . 
H 7 HOH A 9 409 28 HOH HOH . 
H 7 HOH A 10 410 2 HOH HOH . 
H 7 HOH A 11 411 17 HOH HOH . 
H 7 HOH A 12 412 3 HOH HOH . 
H 7 HOH A 13 413 22 HOH HOH . 
H 7 HOH A 14 414 20 HOH HOH . 
H 7 HOH A 15 415 8 HOH HOH . 
H 7 HOH A 16 416 13 HOH HOH . 
H 7 HOH A 17 417 18 HOH HOH . 
H 7 HOH A 18 418 33 HOH HOH . 
H 7 HOH A 19 419 12 HOH HOH . 
H 7 HOH A 20 420 27 HOH HOH . 
H 7 HOH A 21 421 15 HOH HOH . 
H 7 HOH A 22 422 19 HOH HOH . 
H 7 HOH A 23 423 25 HOH HOH . 
H 7 HOH A 24 424 1 HOH HOH . 
H 7 HOH A 25 425 11 HOH HOH . 
H 7 HOH A 26 426 10 HOH HOH . 
H 7 HOH A 27 427 9 HOH HOH . 
I 7 HOH B 1 301 7 HOH HOH . 
I 7 HOH B 2 302 24 HOH HOH . 
I 7 HOH B 3 303 4 HOH HOH . 
I 7 HOH B 4 304 29 HOH HOH . 
I 7 HOH B 5 305 6 HOH HOH . 
I 7 HOH B 6 306 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GTA . . . D 4 16.713 89.526 -2.231 0.8 60.64 ? N2 GTA 302 A 1 
HETATM 2 O O6 GTA . . . D 4 14.509 88.266 1.484 0.8 50.41 ? O6 GTA 302 A 1 
HETATM 3 C C6 GTA . . . D 4 15.458 88.141 0.693 0.8 62.18 ? C6 GTA 302 A 1 
HETATM 4 C C5 GTA . . . D 4 16.412 87.154 0.94 0.8 65.44 ? C5 GTA 302 A 1 
HETATM 5 N N7 GTA . . . D 4 16.514 86.236 1.95 0.8 59.17 ? N7 GTA 302 A 1 
HETATM 6 C C8 GTA . . . D 4 17.627 85.516 1.717 0.8 61.03 ? C8 GTA 302 A 1 
HETATM 7 N N9 GTA . . . D 4 18.233 85.993 0.563 0.8 67.71 ? N9 GTA 302 A 1 
HETATM 8 C C4 GTA . . . D 4 17.467 86.995 0.086 0.8 65.05 ? C4 GTA 302 A 1 
HETATM 9 N N3 GTA . . . D 4 17.586 87.802 -1.011 0.8 65.42 ? N3 GTA 302 A 1 
HETATM 10 C C2 GTA . . . D 4 16.61 88.731 -1.166 0.8 64.44 ? C2 GTA 302 A 1 
HETATM 11 N N1 GTA . . . D 4 15.535 88.942 -0.354 0.8 63.93 ? N1 GTA 302 A 1 
HETATM 12 O O3A GTA . . . D 4 22.803 85.722 0.915 0.8 62.39 ? O3A GTA 302 A 1 
HETATM 13 C C1A GTA . . . D 4 19.325 85.509 0.001 0.8 61.43 ? C1A GTA 302 A 1 
HETATM 14 C C2A GTA . . . D 4 20.545 86.405 0.321 0.8 63.54 ? C2A GTA 302 A 1 
HETATM 15 C C3A GTA . . . D 4 21.396 85.513 1.211 0.8 59.98 ? C3A GTA 302 A 1 
HETATM 16 C C4A GTA . . . D 4 20.979 84.123 0.796 0.8 59.88 ? C4A GTA 302 A 1 
HETATM 17 C C5A GTA . . . D 4 21.192 83.151 1.953 0.8 57.72 ? C5A GTA 302 A 1 
HETATM 18 O O4A GTA . . . D 4 19.579 84.203 0.5 0.8 55.46 ? O4A GTA 302 A 1 
HETATM 19 O O2A GTA . . . D 4 21.259 86.72 -0.898 0.8 57.53 ? O2A GTA 302 A 1 
HETATM 20 P P1 GTA . . . D 4 20.172 82.999 4.327 0.8 53.83 ? P1 GTA 302 A 1 
HETATM 21 O O11 GTA . . . D 4 19.82 81.589 4.768 0.8 42.62 -1 O11 GTA 302 A 1 
HETATM 22 O O12 GTA . . . D 4 21.6 83.305 4.714 0.8 55.21 ? O12 GTA 302 A 1 
HETATM 23 O O13 GTA . . . D 4 19.189 84.042 5.046 0.8 56.33 ? O13 GTA 302 A 1 
HETATM 24 O O15 GTA . . . D 4 20.018 83.105 2.744 0.8 58.29 ? O15 GTA 302 A 1 
HETATM 25 P P2 GTA . . . D 4 19.343 85.58 5.469 0.8 54.38 ? P2 GTA 302 A 1 
HETATM 26 O O22 GTA . . . D 4 17.985 86.14 5.857 0.8 44.52 ? O22 GTA 302 A 1 
HETATM 27 O O21 GTA . . . D 4 19.888 86.374 4.303 0.8 59.57 -1 O21 GTA 302 A 1 
HETATM 28 O O23 GTA . . . D 4 20.339 85.699 6.708 0.8 48.19 ? O23 GTA 302 A 1 
HETATM 29 P P3 GTA . . . D 4 21.164 86.916 7.327 0.8 57.64 ? P3 GTA 302 A 1 
HETATM 30 O O32 GTA . . . D 4 20.222 88.041 7.691 0.8 53.24 ? O32 GTA 302 A 1 
HETATM 31 O O31 GTA . . . D 4 22.171 87.418 6.311 0.8 57.43 -1 O31 GTA 302 A 1 
HETATM 32 O O33 GTA . . . D 4 21.925 86.429 8.624 0.8 55.04 ? O33 GTA 302 A 1 
HETATM 33 C C5B GTA . . . D 4 21.168 86.094 9.77 0.8 55.11 ? C5B GTA 302 A 1 
HETATM 34 C C4B GTA . . . D 4 22.11 85.659 10.859 0.8 57.46 ? C4B GTA 302 A 1 
HETATM 35 O O4B GTA . . . D 4 23.038 84.668 10.337 0.8 56.18 ? O4B GTA 302 A 1 
HETATM 36 C C3B GTA . . . D 4 22.944 86.839 11.296 0.8 58.34 ? C3B GTA 302 A 1 
HETATM 37 O O3B GTA . . . D 4 22.275 87.539 12.388 0.8 61.37 ? O3B GTA 302 A 1 
HETATM 38 C C2B GTA . . . D 4 24.206 86.182 11.799 0.8 57.67 ? C2B GTA 302 A 1 
HETATM 39 O O2B GTA . . . D 4 24.033 85.772 13.176 0.8 59.15 ? O2B GTA 302 A 1 
HETATM 40 C C1B GTA . . . D 4 24.318 84.941 10.885 0.8 58.45 ? C1B GTA 302 A 1 
HETATM 41 N N9C GTA . . . D 4 25.203 85.151 9.915 0.8 66.39 ? N9C GTA 302 A 1 
HETATM 42 C C8C GTA . . . D 4 24.972 85.786 8.727 0.8 64.61 ? C8C GTA 302 A 1 
HETATM 43 N N7C GTA . . . D 4 26.114 85.786 7.998 0.8 63.42 ? N7C GTA 302 A 1 
HETATM 44 C C5C GTA . . . D 4 27.059 85.14 8.734 0.8 69.54 ? C5C GTA 302 A 1 
HETATM 45 C C6C GTA . . . D 4 28.408 84.859 8.451 0.8 73.69 ? C6C GTA 302 A 1 
HETATM 46 N N6C GTA . . . D 4 28.963 85.244 7.295 0.8 74.3 ? N6C GTA 302 A 1 
HETATM 47 N N1C GTA . . . D 4 29.149 84.206 9.334 0.8 72.45 ? N1C GTA 302 A 1 
HETATM 48 C C2C GTA . . . D 4 28.52 83.855 10.467 0.8 69.04 ? C2C GTA 302 A 1 
HETATM 49 N N3C GTA . . . D 4 27.254 84.074 10.822 0.8 70.2 ? N3C GTA 302 A 1 
HETATM 50 C C4C GTA . . . D 4 26.503 84.745 9.915 0.8 70.41 ? C4C GTA 302 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           50 
#