data_7R20
#
_model_server_result.job_id            PEnMvfBmdevzvxfAbZw9QQ 
_model_server_result.datetime_utc      '2024-10-20 20:18:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r20 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":309}' 
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_entry.id    7R20 
#
_exptl.entry_id    7R20 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7R20 
_cell.length_a            45.9 
_cell.length_b            45.9 
_cell.length_c            103.75 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             24 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              24 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             97 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              97 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        A 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.051 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7R20 
_atom_sites.fract_transf_matrix[1][1]    0.021786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL B 1 301 301 GOL GOL . 
C 2 GOL B 1 302 401 GOL GOL . 
D 2 GOL B 1 303 601 GOL GOL . 
E 3 SO4 B 1 304 1 SO4 SO4 . 
F 3 SO4 B 1 305 2 SO4 SO4 . 
G 3 SO4 B 1 306 3 SO4 SO4 . 
H 3 SO4 B 1 307 4 SO4 SO4 . 
I 2 GOL B 1 308 701 GOL GOL . 
J 2 GOL B 1 309 801 GOL GOL . 
K 2 GOL B 1 310 901 GOL GOL . 
L 4 HOH B 1 401 31 HOH HOH . 
L 4 HOH B 2 402 17 HOH HOH . 
L 4 HOH B 3 403 6 HOH HOH . 
L 4 HOH B 4 404 1 HOH HOH . 
L 4 HOH B 5 405 29 HOH HOH . 
L 4 HOH B 6 406 7 HOH HOH . 
L 4 HOH B 7 407 2 HOH HOH . 
L 4 HOH B 8 408 18 HOH HOH . 
L 4 HOH B 9 409 5 HOH HOH . 
L 4 HOH B 10 410 25 HOH HOH . 
L 4 HOH B 11 411 21 HOH HOH . 
L 4 HOH B 12 412 3 HOH HOH . 
L 4 HOH B 13 413 44 HOH HOH . 
L 4 HOH B 14 414 46 HOH HOH . 
L 4 HOH B 15 415 9 HOH HOH . 
L 4 HOH B 16 416 41 HOH HOH . 
L 4 HOH B 17 417 34 HOH HOH . 
L 4 HOH B 18 418 27 HOH HOH . 
L 4 HOH B 19 419 12 HOH HOH . 
L 4 HOH B 20 420 37 HOH HOH . 
L 4 HOH B 21 421 22 HOH HOH . 
L 4 HOH B 22 422 30 HOH HOH . 
L 4 HOH B 23 423 40 HOH HOH . 
L 4 HOH B 24 424 19 HOH HOH . 
L 4 HOH B 25 425 26 HOH HOH . 
L 4 HOH B 26 426 23 HOH HOH . 
L 4 HOH B 27 427 15 HOH HOH . 
L 4 HOH B 28 428 47 HOH HOH . 
L 4 HOH B 29 429 28 HOH HOH . 
L 4 HOH B 30 430 43 HOH HOH . 
L 4 HOH B 31 431 20 HOH HOH . 
L 4 HOH B 32 432 10 HOH HOH . 
L 4 HOH B 33 433 39 HOH HOH . 
L 4 HOH B 34 434 14 HOH HOH . 
L 4 HOH B 35 435 8 HOH HOH . 
L 4 HOH B 36 436 36 HOH HOH . 
L 4 HOH B 37 437 32 HOH HOH . 
L 4 HOH B 38 438 38 HOH HOH . 
L 4 HOH B 39 439 33 HOH HOH . 
L 4 HOH B 40 440 13 HOH HOH . 
L 4 HOH B 41 441 35 HOH HOH . 
L 4 HOH B 42 442 4 HOH HOH . 
L 4 HOH B 43 443 11 HOH HOH . 
L 4 HOH B 44 444 24 HOH HOH . 
L 4 HOH B 45 445 16 HOH HOH . 
L 4 HOH B 46 446 42 HOH HOH . 
L 4 HOH B 47 447 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 2 -8.478 -7.933 -9.901 1 65.7 ? C1 GOL 309 B 1 
HETATM 2 O O1 GOL . . . J 2 -8.136 -8.778 -8.875 1 62.99 ? O1 GOL 309 B 1 
HETATM 3 C C2 GOL . . . J 2 -7.165 -7.199 -10.289 1 68.74 ? C2 GOL 309 B 1 
HETATM 4 O O2 GOL . . . J 2 -6.595 -6.596 -9.177 1 69.56 ? O2 GOL 309 B 1 
HETATM 5 C C3 GOL . . . J 2 -7.553 -6.179 -11.413 1 69.52 ? C3 GOL 309 B 1 
HETATM 6 O O3 GOL . . . J 2 -6.36 -5.77 -12.033 1 70.63 ? O3 GOL 309 B 1 
HETATM 7 H H11 GOL . . . J 2 -9.154 -7.285 -9.648 1 78.93 ? H11 GOL 309 B 1 
HETATM 8 H H12 GOL . . . J 2 -8.833 -8.401 -10.673 1 78.93 ? H12 GOL 309 B 1 
HETATM 9 H HO1 GOL . . . J 2 -7.322 -8.988 -8.997 1 75.67 ? HO1 GOL 309 B 1 
HETATM 10 H H2 GOL . . . J 2 -6.507 -7.821 -10.636 1 82.57 ? H2 GOL 309 B 1 
HETATM 11 H HO2 GOL . . . J 2 -6.664 -5.754 -9.273 1 83.56 ? HO2 GOL 309 B 1 
HETATM 12 H H31 GOL . . . J 2 -8.175 -6.607 -12.023 1 83.5 ? H31 GOL 309 B 1 
HETATM 13 H H32 GOL . . . J 2 -8.049 -5.447 -11.014 1 83.5 ? H32 GOL 309 B 1 
HETATM 14 H HO3 GOL . . . J 2 -6.582 -5.25 -12.674 1 84.84 ? HO3 GOL 309 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#