data_7R2B # _model_server_result.job_id jjOgiBh9ns_SVam5rD767g _model_server_result.datetime_utc '2025-03-04 15:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 7R2B # _exptl.entry_id 7R2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.365 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4~{S})-3-[6-[2-azanyl-4-(trifluoromethyl)pyrimidin-5-yl]-2-morpholin-4-yl-pyrimidin-4-yl]-4-methyl-1,3-oxazolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.19 _cell.angle_gamma 90 _cell.entry_id 7R2B _cell.length_a 142.29 _cell.length_b 64.056 _cell.length_c 117.185 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H18 F3 N7 O3' _chem_comp.formula_weight 425.365 _chem_comp.id H5I _chem_comp.mon_nstd_flag . _chem_comp.name (4~{S})-3-[6-[2-azanyl-4-(trifluoromethyl)pyrimidin-5-yl]-2-morpholin-4-yl-pyrimidin-4-yl]-4-methyl-1,3-oxazolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C9 H5I sing 129 n n O2 C10 H5I sing 130 n n C9 C8 H5I sing 131 n n C10 C11 H5I sing 132 n n C8 N3 H5I sing 133 n n C11 N3 H5I sing 134 n n N3 C7 H5I sing 135 n n C C1 H5I sing 136 n n C7 N1 H5I doub 137 n y C7 N2 H5I sing 138 n y N1 C6 H5I sing 139 n y C13 N4 H5I doub 140 n y C13 C12 H5I sing 141 n y N4 C14 H5I sing 142 n y N2 C4 H5I doub 143 n y C6 C12 H5I sing 144 n n C6 C5 H5I doub 145 n y C1 N H5I sing 146 n n C1 C2 H5I sing 147 n n C4 C5 H5I sing 148 n y C4 N H5I sing 149 n n C12 C15 H5I doub 150 n y C14 N5 H5I sing 151 n n C14 N6 H5I doub 152 n y N C3 H5I sing 153 n n C2 O H5I sing 154 n n C15 N6 H5I sing 155 n y C15 C16 H5I sing 156 n n C3 O H5I sing 157 n n C3 O1 H5I doub 158 n n C16 F H5I sing 159 n n C16 F2 H5I sing 160 n n C16 F1 H5I sing 161 n n C1 H1 H5I sing 162 n n C2 H2 H5I sing 163 n n C2 H3 H5I sing 164 n n C11 H4 H5I sing 165 n n C11 H5 H5I sing 166 n n C13 H6 H5I sing 167 n n N5 H7 H5I sing 168 n n N5 H8 H5I sing 169 n n C5 H9 H5I sing 170 n n C10 H10 H5I sing 171 n n C10 H11 H5I sing 172 n n C9 H12 H5I sing 173 n n C9 H13 H5I sing 174 n n C8 H14 H5I sing 175 n n C8 H15 H5I sing 176 n n C H16 H5I sing 177 n n C H17 H5I sing 178 n n C H18 H5I sing 179 n n # _atom_sites.entry_id 7R2B _atom_sites.fract_transf_matrix[1][1] 0.007028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001647 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008765 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H5I A 1 1101 1 H5I LI1 . C 3 HOH A 1 1201 48 HOH HOH . C 3 HOH A 2 1202 17 HOH HOH . C 3 HOH A 3 1203 122 HOH HOH . C 3 HOH A 4 1204 137 HOH HOH . C 3 HOH A 5 1205 105 HOH HOH . C 3 HOH A 6 1206 149 HOH HOH . C 3 HOH A 7 1207 35 HOH HOH . C 3 HOH A 8 1208 125 HOH HOH . C 3 HOH A 9 1209 119 HOH HOH . C 3 HOH A 10 1210 77 HOH HOH . C 3 HOH A 11 1211 43 HOH HOH . C 3 HOH A 12 1212 111 HOH HOH . C 3 HOH A 13 1213 21 HOH HOH . C 3 HOH A 14 1214 94 HOH HOH . C 3 HOH A 15 1215 38 HOH HOH . C 3 HOH A 16 1216 31 HOH HOH . C 3 HOH A 17 1217 60 HOH HOH . C 3 HOH A 18 1218 91 HOH HOH . C 3 HOH A 19 1219 118 HOH HOH . C 3 HOH A 20 1220 9 HOH HOH . C 3 HOH A 21 1221 102 HOH HOH . C 3 HOH A 22 1222 117 HOH HOH . C 3 HOH A 23 1223 32 HOH HOH . C 3 HOH A 24 1224 84 HOH HOH . C 3 HOH A 25 1225 72 HOH HOH . C 3 HOH A 26 1226 63 HOH HOH . C 3 HOH A 27 1227 1 HOH HOH . C 3 HOH A 28 1228 83 HOH HOH . C 3 HOH A 29 1229 139 HOH HOH . C 3 HOH A 30 1230 58 HOH HOH . C 3 HOH A 31 1231 23 HOH HOH . C 3 HOH A 32 1232 56 HOH HOH . C 3 HOH A 33 1233 24 HOH HOH . C 3 HOH A 34 1234 120 HOH HOH . C 3 HOH A 35 1235 7 HOH HOH . C 3 HOH A 36 1236 19 HOH HOH . C 3 HOH A 37 1237 146 HOH HOH . C 3 HOH A 38 1238 49 HOH HOH . C 3 HOH A 39 1239 108 HOH HOH . C 3 HOH A 40 1240 59 HOH HOH . C 3 HOH A 41 1241 64 HOH HOH . C 3 HOH A 42 1242 148 HOH HOH . C 3 HOH A 43 1243 4 HOH HOH . C 3 HOH A 44 1244 47 HOH HOH . C 3 HOH A 45 1245 28 HOH HOH . C 3 HOH A 46 1246 132 HOH HOH . C 3 HOH A 47 1247 150 HOH HOH . C 3 HOH A 48 1248 2 HOH HOH . C 3 HOH A 49 1249 124 HOH HOH . C 3 HOH A 50 1250 12 HOH HOH . C 3 HOH A 51 1251 8 HOH HOH . C 3 HOH A 52 1252 53 HOH HOH . C 3 HOH A 53 1253 90 HOH HOH . C 3 HOH A 54 1254 69 HOH HOH . C 3 HOH A 55 1255 131 HOH HOH . C 3 HOH A 56 1256 110 HOH HOH . C 3 HOH A 57 1257 51 HOH HOH . C 3 HOH A 58 1258 92 HOH HOH . C 3 HOH A 59 1259 36 HOH HOH . C 3 HOH A 60 1260 3 HOH HOH . C 3 HOH A 61 1261 66 HOH HOH . C 3 HOH A 62 1262 27 HOH HOH . C 3 HOH A 63 1263 100 HOH HOH . C 3 HOH A 64 1264 61 HOH HOH . C 3 HOH A 65 1265 80 HOH HOH . C 3 HOH A 66 1266 40 HOH HOH . C 3 HOH A 67 1267 121 HOH HOH . C 3 HOH A 68 1268 135 HOH HOH . C 3 HOH A 69 1269 18 HOH HOH . C 3 HOH A 70 1270 107 HOH HOH . C 3 HOH A 71 1271 82 HOH HOH . C 3 HOH A 72 1272 127 HOH HOH . C 3 HOH A 73 1273 98 HOH HOH . C 3 HOH A 74 1274 54 HOH HOH . C 3 HOH A 75 1275 39 HOH HOH . C 3 HOH A 76 1276 65 HOH HOH . C 3 HOH A 77 1277 142 HOH HOH . C 3 HOH A 78 1278 46 HOH HOH . C 3 HOH A 79 1279 11 HOH HOH . C 3 HOH A 80 1280 143 HOH HOH . C 3 HOH A 81 1281 86 HOH HOH . C 3 HOH A 82 1282 103 HOH HOH . C 3 HOH A 83 1283 22 HOH HOH . C 3 HOH A 84 1284 67 HOH HOH . C 3 HOH A 85 1285 140 HOH HOH . C 3 HOH A 86 1286 33 HOH HOH . C 3 HOH A 87 1287 14 HOH HOH . C 3 HOH A 88 1288 95 HOH HOH . C 3 HOH A 89 1289 29 HOH HOH . C 3 HOH A 90 1290 99 HOH HOH . C 3 HOH A 91 1291 15 HOH HOH . C 3 HOH A 92 1292 25 HOH HOH . C 3 HOH A 93 1293 133 HOH HOH . C 3 HOH A 94 1294 152 HOH HOH . C 3 HOH A 95 1295 70 HOH HOH . C 3 HOH A 96 1296 26 HOH HOH . C 3 HOH A 97 1297 128 HOH HOH . C 3 HOH A 98 1298 71 HOH HOH . C 3 HOH A 99 1299 37 HOH HOH . C 3 HOH A 100 1300 45 HOH HOH . C 3 HOH A 101 1301 136 HOH HOH . C 3 HOH A 102 1302 6 HOH HOH . C 3 HOH A 103 1303 145 HOH HOH . C 3 HOH A 104 1304 41 HOH HOH . C 3 HOH A 105 1305 52 HOH HOH . C 3 HOH A 106 1306 30 HOH HOH . C 3 HOH A 107 1307 114 HOH HOH . C 3 HOH A 108 1308 79 HOH HOH . C 3 HOH A 109 1309 5 HOH HOH . C 3 HOH A 110 1310 34 HOH HOH . C 3 HOH A 111 1311 96 HOH HOH . C 3 HOH A 112 1312 97 HOH HOH . C 3 HOH A 113 1313 89 HOH HOH . C 3 HOH A 114 1314 109 HOH HOH . C 3 HOH A 115 1315 147 HOH HOH . C 3 HOH A 116 1316 134 HOH HOH . C 3 HOH A 117 1317 85 HOH HOH . C 3 HOH A 118 1318 104 HOH HOH . C 3 HOH A 119 1319 13 HOH HOH . C 3 HOH A 120 1320 115 HOH HOH . C 3 HOH A 121 1321 16 HOH HOH . C 3 HOH A 122 1322 144 HOH HOH . C 3 HOH A 123 1323 76 HOH HOH . C 3 HOH A 124 1324 62 HOH HOH . C 3 HOH A 125 1325 141 HOH HOH . C 3 HOH A 126 1326 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H5I . . . B 2 6.169 -34.335 -23.319 1 39.61 ? C1 H5I 1101 A 1 HETATM 2 C C2 H5I . . . B 2 5.793 -35.381 -22.284 1 40.07 ? C2 H5I 1101 A 1 HETATM 3 C C3 H5I . . . B 2 7.872 -34.617 -21.717 1 40.46 ? C3 H5I 1101 A 1 HETATM 4 O O1 H5I . . . B 2 8.886 -34.508 -21.075 1 40.78 ? O1 H5I 1101 A 1 HETATM 5 O O2 H5I . . . B 2 5.612 -28.819 -27.463 1 39.74 ? O2 H5I 1101 A 1 HETATM 6 C C11 H5I . . . B 2 5.645 -30.361 -25.592 1 39.68 ? C11 H5I 1101 A 1 HETATM 7 C C12 H5I . . . B 2 11.134 -30.5 -23.051 1 43 ? C12 H5I 1101 A 1 HETATM 8 C C13 H5I . . . B 2 11.873 -29.981 -24.092 1 42.78 ? C13 H5I 1101 A 1 HETATM 9 C C14 H5I . . . B 2 13.705 -29.765 -22.781 1 43.95 ? C14 H5I 1101 A 1 HETATM 10 C C15 H5I . . . B 2 11.79 -30.544 -21.807 1 44.51 ? C15 H5I 1101 A 1 HETATM 11 C C16 H5I . . . B 2 11.094 -30.793 -20.481 1 46.2 ? C16 H5I 1101 A 1 HETATM 12 F F2 H5I . . . B 2 10.828 -32.073 -20.281 1 47.45 ? F2 H5I 1101 A 1 HETATM 13 F F H5I . . . B 2 9.923 -30.153 -20.383 1 46.87 ? F H5I 1101 A 1 HETATM 14 F F1 H5I . . . B 2 11.818 -30.403 -19.451 1 45.93 ? F1 H5I 1101 A 1 HETATM 15 N N6 H5I . . . B 2 13.074 -30.211 -21.673 1 44.26 ? N6 H5I 1101 A 1 HETATM 16 N N5 H5I . . . B 2 14.997 -29.46 -22.657 1 44.42 ? N5 H5I 1101 A 1 HETATM 17 N N4 H5I . . . B 2 13.147 -29.609 -23.999 1 43.16 ? N4 H5I 1101 A 1 HETATM 18 C C6 H5I . . . B 2 9.783 -31.039 -23.345 1 42.01 ? C6 H5I 1101 A 1 HETATM 19 C C5 H5I . . . B 2 9.311 -32.227 -22.795 1 41.31 ? C5 H5I 1101 A 1 HETATM 20 N N1 H5I . . . B 2 9.052 -30.302 -24.204 1 41.58 ? N1 H5I 1101 A 1 HETATM 21 C C7 H5I . . . B 2 7.807 -30.758 -24.471 1 40.79 ? C7 H5I 1101 A 1 HETATM 22 N N3 H5I . . . B 2 7.07 -30.068 -25.386 1 39.92 ? N3 H5I 1101 A 1 HETATM 23 C C10 H5I . . . B 2 5.282 -30.146 -27.041 1 39.66 ? C10 H5I 1101 A 1 HETATM 24 C C9 H5I . . . B 2 7.016 -28.572 -27.313 1 39.56 ? C9 H5I 1101 A 1 HETATM 25 C C8 H5I . . . B 2 7.46 -28.736 -25.879 1 39.54 ? C8 H5I 1101 A 1 HETATM 26 N N2 H5I . . . B 2 7.245 -31.861 -23.949 1 40.98 ? N2 H5I 1101 A 1 HETATM 27 C C4 H5I . . . B 2 8.013 -32.597 -23.139 1 41.21 ? C4 H5I 1101 A 1 HETATM 28 N N H5I . . . B 2 7.41 -33.803 -22.71 1 40.56 ? N H5I 1101 A 1 HETATM 29 C C H5I . . . B 2 6.4 -34.906 -24.705 1 38.65 ? C H5I 1101 A 1 HETATM 30 O O H5I . . . B 2 6.97 -35.583 -21.466 1 40.14 ? O H5I 1101 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #