data_7R2V
#
_model_server_result.job_id            qQF4tLPyYNxKr9aDIbcFLw 
_model_server_result.datetime_utc      '2024-11-04 23:33:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r2v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7R2V 
#
_exptl.entry_id    7R2V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.66 
_cell.angle_gamma         90 
_cell.entry_id            7R2V 
_cell.length_a            67.176 
_cell.length_b            100.312 
_cell.length_c            90.874 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R2V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,S 1 1 
B,K,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 207 A CYS 207 1_555 G ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A SG CYS 210 A CYS 210 1_555 G ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc3 A SG CYS 226 A CYS 226 1_555 G ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc4 A ND1 HIS 229 A HIS 229 1_555 G ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc5 A NE2 HIS 257 A HIS 257 1_555 H ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc6 A SG CYS 261 A CYS 261 1_555 H ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc7 A ND1 HIS 264 A HIS 264 1_555 H ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc8 A SG CYS 279 A CYS 279 1_555 H ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc9 A SG CYS 452 A CYS 452 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc10 A SG CYS 477 A CYS 477 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc11 A SG CYS 484 A CYS 484 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc12 A ND1 HIS 487 A HIS 487 1_555 F ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc13 B SG CYS 207 B CYS 207 1_555 P ZN ZN . B ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc14 B SG CYS 210 B CYS 210 1_555 P ZN ZN . B ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc15 B SG CYS 226 B CYS 226 1_555 P ZN ZN . B ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc16 B ND1 HIS 229 B HIS 229 1_555 P ZN ZN . B ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc17 B NE2 HIS 257 B HIS 257 1_555 Q ZN ZN . B ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc18 B SG CYS 261 B CYS 261 1_555 Q ZN ZN . B ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc19 B ND1 HIS 264 B HIS 264 1_555 Q ZN ZN . B ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? 
metalc ? metalc20 B SG CYS 279 B CYS 279 1_555 Q ZN ZN . B ZN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc21 B SG CYS 452 B CYS 452 1_555 O ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc22 B SG CYS 477 B CYS 477 1_555 O ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc23 B SG CYS 484 B CYS 484 1_555 O ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc24 B ND1 HIS 487 B HIS 487 1_555 O ZN ZN . B ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 293 n n 
N HN1 SAH sing 294 n n 
N HN2 SAH sing 295 n n 
CA CB SAH sing 296 n n 
CA C SAH sing 297 n n 
CA HA SAH sing 298 n n 
CB CG SAH sing 299 n n 
CB HB1 SAH sing 300 n n 
CB HB2 SAH sing 301 n n 
CG SD SAH sing 302 n n 
CG HG1 SAH sing 303 n n 
CG HG2 SAH sing 304 n n 
SD C5' SAH sing 305 n n 
C O SAH doub 306 n n 
C OXT SAH sing 307 n n 
OXT HXT SAH sing 308 n n 
C5' C4' SAH sing 309 n n 
C5' "H5'1" SAH sing 310 n n 
C5' "H5'2" SAH sing 311 n n 
C4' O4' SAH sing 312 n n 
C4' C3' SAH sing 313 n n 
C4' H4' SAH sing 314 n n 
O4' C1' SAH sing 315 n n 
C3' O3' SAH sing 316 n n 
C3' C2' SAH sing 317 n n 
C3' H3' SAH sing 318 n n 
O3' HO3' SAH sing 319 n n 
C2' O2' SAH sing 320 n n 
C2' C1' SAH sing 321 n n 
C2' H2' SAH sing 322 n n 
O2' HO2' SAH sing 323 n n 
C1' N9 SAH sing 324 n n 
C1' H1' SAH sing 325 n n 
N9 C8 SAH sing 326 n y 
N9 C4 SAH sing 327 n y 
C8 N7 SAH doub 328 n y 
C8 H8 SAH sing 329 n n 
N7 C5 SAH sing 330 n y 
C5 C6 SAH sing 331 n y 
C5 C4 SAH doub 332 n y 
C6 N6 SAH sing 333 n n 
C6 N1 SAH doub 334 n y 
N6 HN61 SAH sing 335 n n 
N6 HN62 SAH sing 336 n n 
N1 C2 SAH sing 337 n y 
C2 N3 SAH doub 338 n y 
C2 H2 SAH sing 339 n n 
N3 C4 SAH sing 340 n y 
#
_atom_sites.entry_id                     7R2V 
_atom_sites.fract_transf_matrix[1][1]    0.014886 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004739 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009969 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011548 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 601 603 SAH SAH . 
D 3 PEG A 1 602 604 PEG PEG . 
E 4 TRS A 1 603 901 TRS TRS . 
F 5 ZN A 1 604 1 ZN ZN . 
G 5 ZN A 1 605 3 ZN ZN . 
H 5 ZN A 1 606 5 ZN ZN . 
I 5 ZN A 1 607 7 ZN ZN . 
J 5 ZN A 1 608 9 ZN ZN . 
K 3 PEG B 1 801 801 PEG PEG . 
L 2 SAH B 1 802 603 SAH SAH . 
M 3 PEG B 1 803 604 PEG PEG . 
N 3 PEG B 1 804 701 PEG PEG . 
O 5 ZN B 1 805 2 ZN ZN . 
P 5 ZN B 1 806 4 ZN ZN . 
Q 5 ZN B 1 807 6 ZN ZN . 
R 5 ZN B 1 808 8 ZN ZN . 
S 6 HOH A 1 701 41 HOH HOH . 
S 6 HOH A 2 702 22 HOH HOH . 
S 6 HOH A 3 703 7 HOH HOH . 
S 6 HOH A 4 704 46 HOH HOH . 
S 6 HOH A 5 705 25 HOH HOH . 
S 6 HOH A 6 706 37 HOH HOH . 
S 6 HOH A 7 707 19 HOH HOH . 
S 6 HOH A 8 708 52 HOH HOH . 
S 6 HOH A 9 709 18 HOH HOH . 
S 6 HOH A 10 710 18 HOH HOH . 
S 6 HOH A 11 711 96 HOH HOH . 
S 6 HOH A 12 712 78 HOH HOH . 
S 6 HOH A 13 713 27 HOH HOH . 
S 6 HOH A 14 714 10 HOH HOH . 
S 6 HOH A 15 715 57 HOH HOH . 
S 6 HOH A 16 716 62 HOH HOH . 
S 6 HOH A 17 717 47 HOH HOH . 
S 6 HOH A 18 718 37 HOH HOH . 
S 6 HOH A 19 719 55 HOH HOH . 
S 6 HOH A 20 720 50 HOH HOH . 
S 6 HOH A 21 721 34 HOH HOH . 
S 6 HOH A 22 722 50 HOH HOH . 
S 6 HOH A 23 723 58 HOH HOH . 
S 6 HOH A 24 724 32 HOH HOH . 
S 6 HOH A 25 725 65 HOH HOH . 
S 6 HOH A 26 726 38 HOH HOH . 
S 6 HOH A 27 727 45 HOH HOH . 
S 6 HOH A 28 728 98 HOH HOH . 
S 6 HOH A 29 729 9 HOH HOH . 
S 6 HOH A 30 730 36 HOH HOH . 
S 6 HOH A 31 731 54 HOH HOH . 
S 6 HOH A 32 732 28 HOH HOH . 
S 6 HOH A 33 733 39 HOH HOH . 
S 6 HOH A 34 734 19 HOH HOH . 
S 6 HOH A 35 735 39 HOH HOH . 
S 6 HOH A 36 736 23 HOH HOH . 
S 6 HOH A 37 737 11 HOH HOH . 
T 6 HOH B 1 901 61 HOH HOH . 
T 6 HOH B 2 902 13 HOH HOH . 
T 6 HOH B 3 903 6 HOH HOH . 
T 6 HOH B 4 904 5 HOH HOH . 
T 6 HOH B 5 905 2 HOH HOH . 
T 6 HOH B 6 906 33 HOH HOH . 
T 6 HOH B 7 907 31 HOH HOH . 
T 6 HOH B 8 908 14 HOH HOH . 
T 6 HOH B 9 909 3 HOH HOH . 
T 6 HOH B 10 910 51 HOH HOH . 
T 6 HOH B 11 911 11 HOH HOH . 
T 6 HOH B 12 912 29 HOH HOH . 
T 6 HOH B 13 913 49 HOH HOH . 
T 6 HOH B 14 914 66 HOH HOH . 
T 6 HOH B 15 915 64 HOH HOH . 
T 6 HOH B 16 916 12 HOH HOH . 
T 6 HOH B 17 917 1 HOH HOH . 
T 6 HOH B 18 918 28 HOH HOH . 
T 6 HOH B 19 919 43 HOH HOH . 
T 6 HOH B 20 920 77 HOH HOH . 
T 6 HOH B 21 921 30 HOH HOH . 
T 6 HOH B 22 922 32 HOH HOH . 
T 6 HOH B 23 923 33 HOH HOH . 
T 6 HOH B 24 924 101 HOH HOH . 
T 6 HOH B 25 925 34 HOH HOH . 
T 6 HOH B 26 926 40 HOH HOH . 
T 6 HOH B 27 927 67 HOH HOH . 
T 6 HOH B 28 928 81 HOH HOH . 
T 6 HOH B 29 929 56 HOH HOH . 
T 6 HOH B 30 930 63 HOH HOH . 
T 6 HOH B 31 931 60 HOH HOH . 
T 6 HOH B 32 932 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 15.757 -7.117 -14.696 1 66.77 ? N SAH 601 A 1 
HETATM 2 C CA SAH . . . C 2 14.299 -6.894 -14.91 1 66.53 ? CA SAH 601 A 1 
HETATM 3 C CB SAH . . . C 2 13.686 -7.971 -15.812 1 64.36 ? CB SAH 601 A 1 
HETATM 4 C CG SAH . . . C 2 12.481 -7.48 -16.598 1 61.97 ? CG SAH 601 A 1 
HETATM 5 S SD SAH . . . C 2 11.863 -8.664 -17.824 1 58.17 ? SD SAH 601 A 1 
HETATM 6 C C SAH . . . C 2 13.583 -6.919 -13.559 1 65.34 ? C SAH 601 A 1 
HETATM 7 O O SAH . . . C 2 14.153 -7.34 -12.551 1 64.93 ? O SAH 601 A 1 
HETATM 8 O OXT SAH . . . C 2 12.423 -6.507 -13.473 1 62.62 ? OXT SAH 601 A 1 
HETATM 9 C C5' SAH . . . C 2 13.275 -8.967 -18.915 1 60.08 ? C5' SAH 601 A 1 
HETATM 10 C C4' SAH . . . C 2 13.924 -7.763 -19.557 1 59.74 ? C4' SAH 601 A 1 
HETATM 11 O O4' SAH . . . C 2 15.129 -8.201 -20.221 1 60.46 ? O4' SAH 601 A 1 
HETATM 12 C C3' SAH . . . C 2 13.095 -7.052 -20.627 1 62.05 ? C3' SAH 601 A 1 
HETATM 13 O O3' SAH . . . C 2 13.333 -5.649 -20.579 1 60.17 ? O3' SAH 601 A 1 
HETATM 14 C C2' SAH . . . C 2 13.608 -7.686 -21.923 1 63.04 ? C2' SAH 601 A 1 
HETATM 15 O O2' SAH . . . C 2 13.437 -6.869 -23.062 1 65.03 ? O2' SAH 601 A 1 
HETATM 16 C C1' SAH . . . C 2 15.085 -7.853 -21.585 1 61.98 ? C1' SAH 601 A 1 
HETATM 17 N N9 SAH . . . C 2 15.766 -8.894 -22.35 1 62.78 ? N9 SAH 601 A 1 
HETATM 18 C C8 SAH . . . C 2 15.235 -10.076 -22.804 1 63.05 ? C8 SAH 601 A 1 
HETATM 19 N N7 SAH . . . C 2 16.093 -10.81 -23.467 1 62.87 ? N7 SAH 601 A 1 
HETATM 20 C C5 SAH . . . C 2 17.266 -10.07 -23.452 1 61.67 ? C5 SAH 601 A 1 
HETATM 21 C C6 SAH . . . C 2 18.546 -10.308 -23.991 1 61.73 ? C6 SAH 601 A 1 
HETATM 22 N N6 SAH . . . C 2 18.873 -11.398 -24.679 1 59.57 ? N6 SAH 601 A 1 
HETATM 23 N N1 SAH . . . C 2 19.492 -9.358 -23.793 1 64.87 ? N1 SAH 601 A 1 
HETATM 24 C C2 SAH . . . C 2 19.162 -8.254 -23.106 1 63.45 ? C2 SAH 601 A 1 
HETATM 25 N N3 SAH . . . C 2 17.999 -7.927 -22.552 1 63.13 ? N3 SAH 601 A 1 
HETATM 26 C C4 SAH . . . C 2 17.077 -8.885 -22.765 1 62.96 ? C4 SAH 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#