data_7R32 # _model_server_result.job_id xsakhOcd8_I9vPNk80sakg _model_server_result.datetime_utc '2025-03-01 15:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7R32 # _exptl.entry_id 7R32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R32 _cell.length_a 73.98 _cell.length_b 73.98 _cell.length_c 88.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7R32 _atom_sites.fract_transf_matrix[1][1] 0.013517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADP A 1 201 1 ADP ADP . E 2 ADP B 1 201 2 ADP ADP . F 2 ADP C 1 201 3 ADP ADP . G 3 HOH A 1 301 71 HOH HOH . G 3 HOH A 2 302 50 HOH HOH . G 3 HOH A 3 303 74 HOH HOH . G 3 HOH A 4 304 3 HOH HOH . G 3 HOH A 5 305 55 HOH HOH . G 3 HOH A 6 306 12 HOH HOH . G 3 HOH A 7 307 10 HOH HOH . G 3 HOH A 8 308 25 HOH HOH . G 3 HOH A 9 309 85 HOH HOH . G 3 HOH A 10 310 48 HOH HOH . G 3 HOH A 11 311 2 HOH HOH . G 3 HOH A 12 312 69 HOH HOH . G 3 HOH A 13 313 29 HOH HOH . G 3 HOH A 14 314 107 HOH HOH . G 3 HOH A 15 315 14 HOH HOH . G 3 HOH A 16 316 6 HOH HOH . G 3 HOH A 17 317 87 HOH HOH . G 3 HOH A 18 318 72 HOH HOH . G 3 HOH A 19 319 52 HOH HOH . G 3 HOH A 20 320 68 HOH HOH . G 3 HOH A 21 321 61 HOH HOH . G 3 HOH A 22 322 109 HOH HOH . G 3 HOH A 23 323 22 HOH HOH . G 3 HOH A 24 324 73 HOH HOH . G 3 HOH A 25 325 59 HOH HOH . G 3 HOH A 26 326 42 HOH HOH . G 3 HOH A 27 327 28 HOH HOH . G 3 HOH A 28 328 90 HOH HOH . G 3 HOH A 29 329 77 HOH HOH . G 3 HOH A 30 330 112 HOH HOH . G 3 HOH A 31 331 75 HOH HOH . G 3 HOH A 32 332 70 HOH HOH . G 3 HOH A 33 333 65 HOH HOH . G 3 HOH A 34 334 18 HOH HOH . G 3 HOH A 35 335 16 HOH HOH . G 3 HOH A 36 336 111 HOH HOH . G 3 HOH A 37 337 4 HOH HOH . G 3 HOH A 38 338 89 HOH HOH . G 3 HOH A 39 339 92 HOH HOH . G 3 HOH A 40 340 64 HOH HOH . H 3 HOH B 1 301 60 HOH HOH . H 3 HOH B 2 302 35 HOH HOH . H 3 HOH B 3 303 94 HOH HOH . H 3 HOH B 4 304 114 HOH HOH . H 3 HOH B 5 305 13 HOH HOH . H 3 HOH B 6 306 30 HOH HOH . H 3 HOH B 7 307 20 HOH HOH . H 3 HOH B 8 308 66 HOH HOH . H 3 HOH B 9 309 83 HOH HOH . H 3 HOH B 10 310 79 HOH HOH . H 3 HOH B 11 311 41 HOH HOH . H 3 HOH B 12 312 53 HOH HOH . H 3 HOH B 13 313 93 HOH HOH . H 3 HOH B 14 314 1 HOH HOH . H 3 HOH B 15 315 91 HOH HOH . H 3 HOH B 16 316 78 HOH HOH . H 3 HOH B 17 317 105 HOH HOH . H 3 HOH B 18 318 19 HOH HOH . H 3 HOH B 19 319 39 HOH HOH . H 3 HOH B 20 320 15 HOH HOH . H 3 HOH B 21 321 88 HOH HOH . H 3 HOH B 22 322 96 HOH HOH . H 3 HOH B 23 323 113 HOH HOH . H 3 HOH B 24 324 49 HOH HOH . H 3 HOH B 25 325 46 HOH HOH . H 3 HOH B 26 326 5 HOH HOH . H 3 HOH B 27 327 99 HOH HOH . H 3 HOH B 28 328 67 HOH HOH . H 3 HOH B 29 329 104 HOH HOH . H 3 HOH B 30 330 38 HOH HOH . H 3 HOH B 31 331 95 HOH HOH . H 3 HOH B 32 332 108 HOH HOH . H 3 HOH B 33 333 102 HOH HOH . H 3 HOH B 34 334 17 HOH HOH . H 3 HOH B 35 335 80 HOH HOH . H 3 HOH B 36 336 98 HOH HOH . H 3 HOH B 37 337 26 HOH HOH . H 3 HOH B 38 338 56 HOH HOH . H 3 HOH B 39 339 103 HOH HOH . H 3 HOH B 40 340 101 HOH HOH . I 3 HOH C 1 301 36 HOH HOH . I 3 HOH C 2 302 54 HOH HOH . I 3 HOH C 3 303 51 HOH HOH . I 3 HOH C 4 304 21 HOH HOH . I 3 HOH C 5 305 82 HOH HOH . I 3 HOH C 6 306 32 HOH HOH . I 3 HOH C 7 307 31 HOH HOH . I 3 HOH C 8 308 44 HOH HOH . I 3 HOH C 9 309 84 HOH HOH . I 3 HOH C 10 310 8 HOH HOH . I 3 HOH C 11 311 34 HOH HOH . I 3 HOH C 12 312 86 HOH HOH . I 3 HOH C 13 313 76 HOH HOH . I 3 HOH C 14 314 100 HOH HOH . I 3 HOH C 15 315 24 HOH HOH . I 3 HOH C 16 316 106 HOH HOH . I 3 HOH C 17 317 58 HOH HOH . I 3 HOH C 18 318 27 HOH HOH . I 3 HOH C 19 319 40 HOH HOH . I 3 HOH C 20 320 7 HOH HOH . I 3 HOH C 21 321 11 HOH HOH . I 3 HOH C 22 322 45 HOH HOH . I 3 HOH C 23 323 9 HOH HOH . I 3 HOH C 24 324 23 HOH HOH . I 3 HOH C 25 325 57 HOH HOH . I 3 HOH C 26 326 110 HOH HOH . I 3 HOH C 27 327 33 HOH HOH . I 3 HOH C 28 328 81 HOH HOH . I 3 HOH C 29 329 37 HOH HOH . I 3 HOH C 30 330 43 HOH HOH . I 3 HOH C 31 331 97 HOH HOH . I 3 HOH C 32 332 47 HOH HOH . I 3 HOH C 33 333 62 HOH HOH . I 3 HOH C 34 334 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 2 -5.33 45.781 -7.753 1 51.19 ? PB ADP 201 A 1 HETATM 2 O O1B ADP . . . D 2 -5.853 46.568 -8.951 1 49.46 ? O1B ADP 201 A 1 HETATM 3 O O2B ADP . . . D 2 -4.66 46.67 -6.711 1 51.05 ? O2B ADP 201 A 1 HETATM 4 O O3B ADP . . . D 2 -6.445 44.799 -7.265 1 45.49 ? O3B ADP 201 A 1 HETATM 5 P PA ADP . . . D 2 -2.964 43.788 -8.384 1 36.1 ? PA ADP 201 A 1 HETATM 6 O O1A ADP . . . D 2 -2.853 43.176 -9.738 1 36.95 ? O1A ADP 201 A 1 HETATM 7 O O2A ADP . . . D 2 -1.703 44.187 -7.67 1 34.38 ? O2A ADP 201 A 1 HETATM 8 O O3A ADP . . . D 2 -4.05 45.006 -8.571 1 40.72 ? O3A ADP 201 A 1 HETATM 9 O O5' ADP . . . D 2 -3.793 42.661 -7.474 1 32.95 ? O5' ADP 201 A 1 HETATM 10 C C5' ADP . . . D 2 -4.97 42.016 -8.074 1 30.75 ? C5' ADP 201 A 1 HETATM 11 C C4' ADP . . . D 2 -5.621 41.206 -6.95 1 28.42 ? C4' ADP 201 A 1 HETATM 12 O O4' ADP . . . D 2 -4.65 40.26 -6.526 1 25.98 ? O4' ADP 201 A 1 HETATM 13 C C3' ADP . . . D 2 -5.852 41.998 -5.66 1 23.82 ? C3' ADP 201 A 1 HETATM 14 O O3' ADP . . . D 2 -7.038 42.809 -5.786 1 27.04 ? O3' ADP 201 A 1 HETATM 15 C C2' ADP . . . D 2 -5.896 40.88 -4.616 1 25.17 ? C2' ADP 201 A 1 HETATM 16 O O2' ADP . . . D 2 -7.164 40.247 -4.661 1 24.06 ? O2' ADP 201 A 1 HETATM 17 C C1' ADP . . . D 2 -4.75 40.022 -5.11 1 26.81 ? C1' ADP 201 A 1 HETATM 18 N N9 ADP . . . D 2 -3.499 40.422 -4.421 1 25.54 ? N9 ADP 201 A 1 HETATM 19 C C8 ADP . . . D 2 -2.502 41.23 -4.828 1 26.75 ? C8 ADP 201 A 1 HETATM 20 N N7 ADP . . . D 2 -1.517 41.183 -4.002 1 26.81 ? N7 ADP 201 A 1 HETATM 21 C C5 ADP . . . D 2 -1.859 40.315 -3.015 1 27.34 ? C5 ADP 201 A 1 HETATM 22 C C6 ADP . . . D 2 -1.212 39.863 -1.792 1 27.01 ? C6 ADP 201 A 1 HETATM 23 N N6 ADP . . . D 2 0.005 40.389 -1.494 1 30.82 ? N6 ADP 201 A 1 HETATM 24 N N1 ADP . . . D 2 -1.847 39.015 -1.015 1 23.35 ? N1 ADP 201 A 1 HETATM 25 C C2 ADP . . . D 2 -3.046 38.508 -1.474 1 24.61 ? C2 ADP 201 A 1 HETATM 26 N N3 ADP . . . D 2 -3.76 38.899 -2.608 1 25.57 ? N3 ADP 201 A 1 HETATM 27 C C4 ADP . . . D 2 -3.142 39.822 -3.347 1 27.52 ? C4 ADP 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #