data_7R37 # _model_server_result.job_id RN3tmoGNx8HvyIGzeVEKSA _model_server_result.datetime_utc '2024-11-02 07:29:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7R37 # _exptl.entry_id 7R37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R37 _cell.length_a 112.531 _cell.length_b 112.531 _cell.length_c 122.831 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 112.531 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 3 1_555 A SG CYS 28 A CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 B SG CYS 23 B CYS 3 1_555 B SG CYS 28 B CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7R37 _atom_sites.fract_transf_matrix[1][1] 0.008886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 NOS A 1 602 602 NOS NOS . E 2 NAD B 1 601 601 NAD NAD . F 3 NOS B 1 602 602 NOS NOS . G 4 HOH A 1 701 467 HOH HOH . G 4 HOH A 2 702 445 HOH HOH . G 4 HOH A 3 703 474 HOH HOH . G 4 HOH A 4 704 460 HOH HOH . G 4 HOH A 5 705 482 HOH HOH . G 4 HOH A 6 706 432 HOH HOH . G 4 HOH A 7 707 463 HOH HOH . G 4 HOH A 8 708 423 HOH HOH . G 4 HOH A 9 709 428 HOH HOH . G 4 HOH A 10 710 442 HOH HOH . G 4 HOH A 11 711 448 HOH HOH . G 4 HOH A 12 712 456 HOH HOH . G 4 HOH A 13 713 426 HOH HOH . G 4 HOH A 14 714 475 HOH HOH . G 4 HOH A 15 715 434 HOH HOH . G 4 HOH A 16 716 461 HOH HOH . G 4 HOH A 17 717 464 HOH HOH . G 4 HOH A 18 718 447 HOH HOH . G 4 HOH A 19 719 429 HOH HOH . G 4 HOH A 20 720 425 HOH HOH . G 4 HOH A 21 721 470 HOH HOH . G 4 HOH A 22 722 458 HOH HOH . G 4 HOH A 23 723 455 HOH HOH . G 4 HOH A 24 724 462 HOH HOH . G 4 HOH A 25 725 427 HOH HOH . G 4 HOH A 26 726 451 HOH HOH . G 4 HOH A 27 727 424 HOH HOH . G 4 HOH A 28 728 423 HOH HOH . G 4 HOH A 29 729 450 HOH HOH . G 4 HOH A 30 730 444 HOH HOH . G 4 HOH A 31 731 435 HOH HOH . G 4 HOH A 32 732 473 HOH HOH . G 4 HOH A 33 733 438 HOH HOH . G 4 HOH A 34 734 466 HOH HOH . G 4 HOH A 35 735 478 HOH HOH . G 4 HOH A 36 736 472 HOH HOH . G 4 HOH A 37 737 422 HOH HOH . G 4 HOH A 38 738 476 HOH HOH . G 4 HOH A 39 739 431 HOH HOH . G 4 HOH A 40 740 443 HOH HOH . G 4 HOH A 41 741 454 HOH HOH . G 4 HOH A 42 742 446 HOH HOH . G 4 HOH A 43 743 457 HOH HOH . G 4 HOH A 44 744 440 HOH HOH . G 4 HOH A 45 745 471 HOH HOH . G 4 HOH A 46 746 479 HOH HOH . G 4 HOH A 47 747 439 HOH HOH . G 4 HOH A 48 748 449 HOH HOH . G 4 HOH A 49 749 459 HOH HOH . G 4 HOH A 50 750 484 HOH HOH . G 4 HOH A 51 751 480 HOH HOH . G 4 HOH A 52 752 453 HOH HOH . G 4 HOH A 53 753 465 HOH HOH . G 4 HOH A 54 754 466 HOH HOH . G 4 HOH A 55 755 481 HOH HOH . G 4 HOH A 56 756 452 HOH HOH . G 4 HOH A 57 757 436 HOH HOH . G 4 HOH A 58 758 469 HOH HOH . G 4 HOH A 59 759 468 HOH HOH . G 4 HOH A 60 760 477 HOH HOH . G 4 HOH A 61 761 441 HOH HOH . G 4 HOH A 62 762 483 HOH HOH . H 4 HOH B 1 701 439 HOH HOH . H 4 HOH B 2 702 463 HOH HOH . H 4 HOH B 3 703 445 HOH HOH . H 4 HOH B 4 704 460 HOH HOH . H 4 HOH B 5 705 425 HOH HOH . H 4 HOH B 6 706 458 HOH HOH . H 4 HOH B 7 707 435 HOH HOH . H 4 HOH B 8 708 440 HOH HOH . H 4 HOH B 9 709 427 HOH HOH . H 4 HOH B 10 710 449 HOH HOH . H 4 HOH B 11 711 424 HOH HOH . H 4 HOH B 12 712 464 HOH HOH . H 4 HOH B 13 713 442 HOH HOH . H 4 HOH B 14 714 434 HOH HOH . H 4 HOH B 15 715 462 HOH HOH . H 4 HOH B 16 716 457 HOH HOH . H 4 HOH B 17 717 450 HOH HOH . H 4 HOH B 18 718 428 HOH HOH . H 4 HOH B 19 719 436 HOH HOH . H 4 HOH B 20 720 451 HOH HOH . H 4 HOH B 21 721 446 HOH HOH . H 4 HOH B 22 722 453 HOH HOH . H 4 HOH B 23 723 469 HOH HOH . H 4 HOH B 24 724 426 HOH HOH . H 4 HOH B 25 725 471 HOH HOH . H 4 HOH B 26 726 429 HOH HOH . H 4 HOH B 27 727 431 HOH HOH . H 4 HOH B 28 728 422 HOH HOH . H 4 HOH B 29 729 456 HOH HOH . H 4 HOH B 30 730 467 HOH HOH . H 4 HOH B 31 731 430 HOH HOH . H 4 HOH B 32 732 441 HOH HOH . H 4 HOH B 33 733 432 HOH HOH . H 4 HOH B 34 734 433 HOH HOH . H 4 HOH B 35 735 470 HOH HOH . H 4 HOH B 36 736 443 HOH HOH . H 4 HOH B 37 737 437 HOH HOH . H 4 HOH B 38 738 437 HOH HOH . H 4 HOH B 39 739 452 HOH HOH . H 4 HOH B 40 740 444 HOH HOH . H 4 HOH B 41 741 448 HOH HOH . H 4 HOH B 42 742 454 HOH HOH . H 4 HOH B 43 743 455 HOH HOH . H 4 HOH B 44 744 459 HOH HOH . H 4 HOH B 45 745 433 HOH HOH . H 4 HOH B 46 746 465 HOH HOH . H 4 HOH B 47 747 438 HOH HOH . H 4 HOH B 48 748 430 HOH HOH . H 4 HOH B 49 749 461 HOH HOH . H 4 HOH B 50 750 447 HOH HOH . H 4 HOH B 51 751 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 35.469 7.729 38.212 1 39.88 ? PA NAD 601 A 1 HETATM 2 O O1A NAD . . . C 2 34.55 8.53 37.326 1 51.64 ? O1A NAD 601 A 1 HETATM 3 O O2A NAD . . . C 2 36.386 8.188 39.306 1 40.38 ? O2A NAD 601 A 1 HETATM 4 O O5B NAD . . . C 2 36.6 7.149 37.041 1 42.43 ? O5B NAD 601 A 1 HETATM 5 C C5B NAD . . . C 2 36.008 7.007 35.805 1 38.25 ? C5B NAD 601 A 1 HETATM 6 C C4B NAD . . . C 2 37.177 7.236 34.846 1 42.9 ? C4B NAD 601 A 1 HETATM 7 O O4B NAD . . . C 2 36.988 6.566 33.605 1 35.91 ? O4B NAD 601 A 1 HETATM 8 C C3B NAD . . . C 2 37.239 8.788 34.59 1 35.93 ? C3B NAD 601 A 1 HETATM 9 O O3B NAD . . . C 2 38.5 9.173 35.039 1 34.17 ? O3B NAD 601 A 1 HETATM 10 C C2B NAD . . . C 2 37.118 8.881 33.062 1 38.11 ? C2B NAD 601 A 1 HETATM 11 O O2B NAD . . . C 2 38.035 9.782 32.521 1 35.09 ? O2B NAD 601 A 1 HETATM 12 C C1B NAD . . . C 2 37.559 7.418 32.633 1 36.01 ? C1B NAD 601 A 1 HETATM 13 N N9A NAD . . . C 2 36.955 7.056 31.364 1 41.69 ? N9A NAD 601 A 1 HETATM 14 C C8A NAD . . . C 2 35.622 7.214 30.898 1 35.8 ? C8A NAD 601 A 1 HETATM 15 N N7A NAD . . . C 2 35.467 6.735 29.658 1 40.67 ? N7A NAD 601 A 1 HETATM 16 C C5A NAD . . . C 2 36.754 6.254 29.302 1 37.56 ? C5A NAD 601 A 1 HETATM 17 C C6A NAD . . . C 2 37.269 5.642 28.124 1 36.54 ? C6A NAD 601 A 1 HETATM 18 N N6A NAD . . . C 2 36.448 5.427 27.072 1 35.03 ? N6A NAD 601 A 1 HETATM 19 N N1A NAD . . . C 2 38.6 5.275 28.049 1 37.75 ? N1A NAD 601 A 1 HETATM 20 C C2A NAD . . . C 2 39.372 5.528 29.148 1 35.21 ? C2A NAD 601 A 1 HETATM 21 N N3A NAD . . . C 2 39.022 6.102 30.33 1 34.24 ? N3A NAD 601 A 1 HETATM 22 C C4A NAD . . . C 2 37.688 6.449 30.361 1 33.44 ? C4A NAD 601 A 1 HETATM 23 O O3 NAD . . . C 2 34.529 6.41 38.471 1 43.38 ? O3 NAD 601 A 1 HETATM 24 P PN NAD . . . C 2 34.947 5.421 39.669 1 36.07 ? PN NAD 601 A 1 HETATM 25 O O1N NAD . . . C 2 34.411 5.665 41.057 1 41.05 ? O1N NAD 601 A 1 HETATM 26 O O2N NAD . . . C 2 36.308 4.948 39.29 1 37.37 ? O2N NAD 601 A 1 HETATM 27 O O5D NAD . . . C 2 34.106 3.889 39.315 1 41.72 ? O5D NAD 601 A 1 HETATM 28 C C5D NAD . . . C 2 33.875 3.808 37.96 1 39.43 ? C5D NAD 601 A 1 HETATM 29 C C4D NAD . . . C 2 33.062 2.545 37.693 1 42.04 ? C4D NAD 601 A 1 HETATM 30 O O4D NAD . . . C 2 33.365 1.528 38.723 1 39.96 ? O4D NAD 601 A 1 HETATM 31 C C3D NAD . . . C 2 31.555 2.898 37.853 1 38.69 ? C3D NAD 601 A 1 HETATM 32 O O3D NAD . . . C 2 30.868 2.048 36.977 1 37.53 ? O3D NAD 601 A 1 HETATM 33 C C2D NAD . . . C 2 31.287 2.525 39.327 1 38.54 ? C2D NAD 601 A 1 HETATM 34 O O2D NAD . . . C 2 29.979 2.158 39.589 1 40.57 ? O2D NAD 601 A 1 HETATM 35 C C1D NAD . . . C 2 32.113 1.208 39.378 1 36.47 ? C1D NAD 601 A 1 HETATM 36 N N1N NAD . . . C 2 32.501 0.803 40.799 1 38.67 ? N1N NAD 601 A 1 HETATM 37 C C2N NAD . . . C 2 32.721 -0.534 40.972 1 33.38 ? C2N NAD 601 A 1 HETATM 38 C C3N NAD . . . C 2 33.131 -1.015 42.218 1 33.76 ? C3N NAD 601 A 1 HETATM 39 C C7N NAD . . . C 2 33.319 -2.487 42.286 1 38.07 ? C7N NAD 601 A 1 HETATM 40 O O7N NAD . . . C 2 33.657 -3.164 41.279 1 37.67 ? O7N NAD 601 A 1 HETATM 41 N N7N NAD . . . C 2 33.09 -3.061 43.519 1 29.98 ? N7N NAD 601 A 1 HETATM 42 C C4N NAD . . . C 2 33.345 -0.129 43.293 1 35.23 ? C4N NAD 601 A 1 HETATM 43 C C5N NAD . . . C 2 33.117 1.246 43.103 1 40.95 ? C5N NAD 601 A 1 HETATM 44 C C6N NAD . . . C 2 32.694 1.724 41.828 1 40.31 ? C6N NAD 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #