data_7R3A # _model_server_result.job_id OX7Fgcz4bTuwwgKb1kk6pQ _model_server_result.datetime_utc '2024-12-01 08:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":502}' # _entry.id 7R3A # _exptl.entry_id 7R3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.23 _cell.angle_gamma 90 _cell.entry_id 7R3A _cell.length_a 65.775 _cell.length_b 328.867 _cell.length_c 85.094 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,U,V,W,GA,KA 1 1 B,D,L,M,N,R,S,T,HA,JA 2 1 C,H,O,P,Q,DA,EA,FA,IA,NA 3 1 F,G,X,Y,Z,AA,BA,CA,LA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 M N N ? 3 P N N ? 3 S N N ? 3 W N N ? 3 Z N N ? 3 CA N N ? 3 FA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7R3A _atom_sites.fract_transf_matrix[1][1] 0.015203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NOS A 1 501 501 NOS NOS . J 3 NAD A 1 502 502 NAD NAD . K 4 PG4 A 1 503 503 PG4 PG4 . L 2 NOS B 1 501 501 NOS NOS . M 3 NAD B 1 502 502 NAD NAD . N 4 PG4 B 1 503 503 PG4 PG4 . O 2 NOS C 1 501 501 NOS NOS . P 3 NAD C 1 502 502 NAD NAD . Q 4 PG4 C 1 503 503 PG4 PG4 . R 2 NOS D 1 501 501 NOS NOS . S 3 NAD D 1 502 502 NAD NAD . T 4 PG4 D 1 503 503 PG4 PG4 . U 4 PG4 E 1 501 503 PG4 PG4 . V 2 NOS E 1 502 501 NOS NOS . W 3 NAD E 1 503 502 NAD NAD . X 4 PG4 F 1 501 503 PG4 PG4 . Y 2 NOS F 1 502 501 NOS NOS . Z 3 NAD F 1 503 502 NAD NAD . AA 4 PG4 G 1 501 503 PG4 PG4 . BA 2 NOS G 1 502 501 NOS NOS . CA 3 NAD G 1 503 502 NAD NAD . DA 4 PG4 H 1 501 503 PG4 PG4 . EA 2 NOS H 1 502 501 NOS NOS . FA 3 NAD H 1 503 502 NAD NAD . GA 5 HOH A 1 601 25 HOH HOH . GA 5 HOH A 2 602 96 HOH HOH . GA 5 HOH A 3 603 61 HOH HOH . GA 5 HOH A 4 604 72 HOH HOH . GA 5 HOH A 5 605 52 HOH HOH . GA 5 HOH A 6 606 39 HOH HOH . GA 5 HOH A 7 607 74 HOH HOH . GA 5 HOH A 8 608 17 HOH HOH . GA 5 HOH A 9 609 50 HOH HOH . GA 5 HOH A 10 610 67 HOH HOH . HA 5 HOH B 1 601 90 HOH HOH . HA 5 HOH B 2 602 91 HOH HOH . HA 5 HOH B 3 603 78 HOH HOH . HA 5 HOH B 4 604 68 HOH HOH . HA 5 HOH B 5 605 89 HOH HOH . HA 5 HOH B 6 606 27 HOH HOH . HA 5 HOH B 7 607 73 HOH HOH . HA 5 HOH B 8 608 85 HOH HOH . HA 5 HOH B 9 609 94 HOH HOH . HA 5 HOH B 10 610 93 HOH HOH . HA 5 HOH B 11 611 54 HOH HOH . HA 5 HOH B 12 612 76 HOH HOH . HA 5 HOH B 13 613 38 HOH HOH . HA 5 HOH B 14 614 70 HOH HOH . HA 5 HOH B 15 615 24 HOH HOH . HA 5 HOH B 16 616 48 HOH HOH . IA 5 HOH C 1 601 41 HOH HOH . IA 5 HOH C 2 602 6 HOH HOH . IA 5 HOH C 3 603 14 HOH HOH . IA 5 HOH C 4 604 12 HOH HOH . IA 5 HOH C 5 605 84 HOH HOH . IA 5 HOH C 6 606 71 HOH HOH . IA 5 HOH C 7 607 3 HOH HOH . IA 5 HOH C 8 608 28 HOH HOH . IA 5 HOH C 9 609 66 HOH HOH . IA 5 HOH C 10 610 40 HOH HOH . IA 5 HOH C 11 611 69 HOH HOH . IA 5 HOH C 12 612 35 HOH HOH . IA 5 HOH C 13 613 23 HOH HOH . IA 5 HOH C 14 614 58 HOH HOH . IA 5 HOH C 15 615 16 HOH HOH . IA 5 HOH C 16 616 64 HOH HOH . IA 5 HOH C 17 617 18 HOH HOH . IA 5 HOH C 18 618 77 HOH HOH . IA 5 HOH C 19 619 22 HOH HOH . IA 5 HOH C 20 620 42 HOH HOH . IA 5 HOH C 21 621 21 HOH HOH . JA 5 HOH D 1 601 26 HOH HOH . JA 5 HOH D 2 602 86 HOH HOH . JA 5 HOH D 3 603 92 HOH HOH . JA 5 HOH D 4 604 1 HOH HOH . JA 5 HOH D 5 605 59 HOH HOH . JA 5 HOH D 6 606 7 HOH HOH . JA 5 HOH D 7 607 34 HOH HOH . JA 5 HOH D 8 608 36 HOH HOH . JA 5 HOH D 9 609 11 HOH HOH . JA 5 HOH D 10 610 56 HOH HOH . JA 5 HOH D 11 611 62 HOH HOH . JA 5 HOH D 12 612 65 HOH HOH . JA 5 HOH D 13 613 15 HOH HOH . JA 5 HOH D 14 614 53 HOH HOH . JA 5 HOH D 15 615 8 HOH HOH . KA 5 HOH E 1 601 87 HOH HOH . KA 5 HOH E 2 602 44 HOH HOH . KA 5 HOH E 3 603 5 HOH HOH . KA 5 HOH E 4 604 60 HOH HOH . KA 5 HOH E 5 605 4 HOH HOH . KA 5 HOH E 6 606 45 HOH HOH . KA 5 HOH E 7 607 9 HOH HOH . KA 5 HOH E 8 608 33 HOH HOH . KA 5 HOH E 9 609 75 HOH HOH . KA 5 HOH E 10 610 32 HOH HOH . KA 5 HOH E 11 611 29 HOH HOH . KA 5 HOH E 12 612 20 HOH HOH . KA 5 HOH E 13 613 79 HOH HOH . KA 5 HOH E 14 614 83 HOH HOH . KA 5 HOH E 15 615 30 HOH HOH . KA 5 HOH E 16 616 46 HOH HOH . KA 5 HOH E 17 617 19 HOH HOH . KA 5 HOH E 18 618 88 HOH HOH . LA 5 HOH F 1 601 81 HOH HOH . LA 5 HOH F 2 602 95 HOH HOH . LA 5 HOH F 3 603 31 HOH HOH . LA 5 HOH F 4 604 80 HOH HOH . LA 5 HOH F 5 605 97 HOH HOH . LA 5 HOH F 6 606 13 HOH HOH . LA 5 HOH F 7 607 43 HOH HOH . LA 5 HOH F 8 608 55 HOH HOH . MA 5 HOH G 1 601 82 HOH HOH . MA 5 HOH G 2 602 49 HOH HOH . MA 5 HOH G 3 603 10 HOH HOH . NA 5 HOH H 1 601 2 HOH HOH . NA 5 HOH H 2 602 47 HOH HOH . NA 5 HOH H 3 603 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 3 9.327 26.186 30.695 1 39.43 ? PA NAD 502 A 1 HETATM 2 O O1A NAD . . . J 3 10.597 26.113 31.502 1 46.89 ? O1A NAD 502 A 1 HETATM 3 O O2A NAD . . . J 3 8.176 25.239 30.59 1 45.68 ? O2A NAD 502 A 1 HETATM 4 O O5B NAD . . . J 3 10.002 26.059 29.086 1 33.1 ? O5B NAD 502 A 1 HETATM 5 C C5B NAD . . . J 3 11.38 26.063 29.227 1 41.45 ? C5B NAD 502 A 1 HETATM 6 C C4B NAD . . . J 3 11.979 24.987 28.353 1 43.88 ? C4B NAD 502 A 1 HETATM 7 O O4B NAD . . . J 3 13.266 25.416 27.936 1 45.07 ? O4B NAD 502 A 1 HETATM 8 C C3B NAD . . . J 3 12.16 23.76 29.272 1 46.16 ? C3B NAD 502 A 1 HETATM 9 O O3B NAD . . . J 3 11.484 22.728 28.635 1 45.71 ? O3B NAD 502 A 1 HETATM 10 C C2B NAD . . . J 3 13.7 23.561 29.288 1 46.91 ? C2B NAD 502 A 1 HETATM 11 O O2B NAD . . . J 3 14.049 22.226 29.171 1 51.17 ? O2B NAD 502 A 1 HETATM 12 C C1B NAD . . . J 3 14.104 24.287 27.955 1 45.65 ? C1B NAD 502 A 1 HETATM 13 N N9A NAD . . . J 3 15.499 24.78 27.969 1 39.58 ? N9A NAD 502 A 1 HETATM 14 C C8A NAD . . . J 3 16.217 25.406 28.996 1 38.84 ? C8A NAD 502 A 1 HETATM 15 N N7A NAD . . . J 3 17.465 25.709 28.646 1 37.35 ? N7A NAD 502 A 1 HETATM 16 C C5A NAD . . . J 3 17.575 25.247 27.317 1 41.62 ? C5A NAD 502 A 1 HETATM 17 C C6A NAD . . . J 3 18.638 25.264 26.376 1 49.61 ? C6A NAD 502 A 1 HETATM 18 N N6A NAD . . . J 3 19.829 25.802 26.735 1 44.72 ? N6A NAD 502 A 1 HETATM 19 N N1A NAD . . . J 3 18.477 24.737 25.126 1 45.01 ? N1A NAD 502 A 1 HETATM 20 C C2A NAD . . . J 3 17.242 24.215 24.852 1 41.85 ? C2A NAD 502 A 1 HETATM 21 N N3A NAD . . . J 3 16.138 24.128 25.629 1 41.11 ? N3A NAD 502 A 1 HETATM 22 C C4A NAD . . . J 3 16.354 24.663 26.879 1 37.22 ? C4A NAD 502 A 1 HETATM 23 O O3 NAD . . . J 3 9.011 27.737 31.01 1 58.89 ? O3 NAD 502 A 1 HETATM 24 P PN NAD . . . J 3 7.776 28.385 30.259 1 39.6 ? PN NAD 502 A 1 HETATM 25 O O1N NAD . . . J 3 6.511 28.635 31.034 1 45.85 ? O1N NAD 502 A 1 HETATM 26 O O2N NAD . . . J 3 7.984 27.897 28.87 1 28.03 ? O2N NAD 502 A 1 HETATM 27 O O5D NAD . . . J 3 8.255 30.075 29.979 1 51.83 ? O5D NAD 502 A 1 HETATM 28 C C5D NAD . . . J 3 9.34 30.048 29.17 1 45.24 ? C5D NAD 502 A 1 HETATM 29 C C4D NAD . . . J 3 9.992 31.437 29.102 1 45.56 ? C4D NAD 502 A 1 HETATM 30 O O4D NAD . . . J 3 9.127 32.4 28.447 1 52.33 ? O4D NAD 502 A 1 HETATM 31 C C3D NAD . . . J 3 10.235 31.938 30.545 1 49.17 ? C3D NAD 502 A 1 HETATM 32 O O3D NAD . . . J 3 11.38 32.715 30.467 1 46.42 ? O3D NAD 502 A 1 HETATM 33 C C2D NAD . . . J 3 9.001 32.801 30.806 1 45.78 ? C2D NAD 502 A 1 HETATM 34 O O2D NAD . . . J 3 9.234 33.848 31.684 1 50.5 ? O2D NAD 502 A 1 HETATM 35 C C1D NAD . . . J 3 8.85 33.425 29.372 1 48.19 ? C1D NAD 502 A 1 HETATM 36 N N1N NAD . . . J 3 7.42 33.764 29.105 1 50.06 ? N1N NAD 502 A 1 HETATM 37 C C2N NAD . . . J 3 7.214 34.701 28.145 1 56.54 ? C2N NAD 502 A 1 HETATM 38 C C3N NAD . . . J 3 5.915 35.071 27.83 1 51.22 ? C3N NAD 502 A 1 HETATM 39 C C7N NAD . . . J 3 5.776 36.111 26.785 1 47.23 ? C7N NAD 502 A 1 HETATM 40 O O7N NAD . . . J 3 6.624 36.283 25.911 1 49.44 ? O7N NAD 502 A 1 HETATM 41 N N7N NAD . . . J 3 4.661 36.909 26.883 1 43.18 ? N7N NAD 502 A 1 HETATM 42 C C4N NAD . . . J 3 4.842 34.466 28.479 1 49.95 ? C4N NAD 502 A 1 HETATM 43 C C5N NAD . . . J 3 5.08 33.505 29.453 1 51.22 ? C5N NAD 502 A 1 HETATM 44 C C6N NAD . . . J 3 6.395 33.146 29.765 1 51.49 ? C6N NAD 502 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #