data_7R3A # _model_server_result.job_id BcEprCEB_fL-43xQPIzmLA _model_server_result.datetime_utc '2024-11-28 16:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":502}' # _entry.id 7R3A # _exptl.entry_id 7R3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.23 _cell.angle_gamma 90 _cell.entry_id 7R3A _cell.length_a 65.775 _cell.length_b 328.867 _cell.length_c 85.094 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,U,V,W,GA,KA 1 1 B,D,L,M,N,R,S,T,HA,JA 2 1 C,H,O,P,Q,DA,EA,FA,IA,NA 3 1 F,G,X,Y,Z,AA,BA,CA,LA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 M N N ? 3 P N N ? 3 S N N ? 3 W N N ? 3 Z N N ? 3 CA N N ? 3 FA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7R3A _atom_sites.fract_transf_matrix[1][1] 0.015203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NOS A 1 501 501 NOS NOS . J 3 NAD A 1 502 502 NAD NAD . K 4 PG4 A 1 503 503 PG4 PG4 . L 2 NOS B 1 501 501 NOS NOS . M 3 NAD B 1 502 502 NAD NAD . N 4 PG4 B 1 503 503 PG4 PG4 . O 2 NOS C 1 501 501 NOS NOS . P 3 NAD C 1 502 502 NAD NAD . Q 4 PG4 C 1 503 503 PG4 PG4 . R 2 NOS D 1 501 501 NOS NOS . S 3 NAD D 1 502 502 NAD NAD . T 4 PG4 D 1 503 503 PG4 PG4 . U 4 PG4 E 1 501 503 PG4 PG4 . V 2 NOS E 1 502 501 NOS NOS . W 3 NAD E 1 503 502 NAD NAD . X 4 PG4 F 1 501 503 PG4 PG4 . Y 2 NOS F 1 502 501 NOS NOS . Z 3 NAD F 1 503 502 NAD NAD . AA 4 PG4 G 1 501 503 PG4 PG4 . BA 2 NOS G 1 502 501 NOS NOS . CA 3 NAD G 1 503 502 NAD NAD . DA 4 PG4 H 1 501 503 PG4 PG4 . EA 2 NOS H 1 502 501 NOS NOS . FA 3 NAD H 1 503 502 NAD NAD . GA 5 HOH A 1 601 25 HOH HOH . GA 5 HOH A 2 602 96 HOH HOH . GA 5 HOH A 3 603 61 HOH HOH . GA 5 HOH A 4 604 72 HOH HOH . GA 5 HOH A 5 605 52 HOH HOH . GA 5 HOH A 6 606 39 HOH HOH . GA 5 HOH A 7 607 74 HOH HOH . GA 5 HOH A 8 608 17 HOH HOH . GA 5 HOH A 9 609 50 HOH HOH . GA 5 HOH A 10 610 67 HOH HOH . HA 5 HOH B 1 601 90 HOH HOH . HA 5 HOH B 2 602 91 HOH HOH . HA 5 HOH B 3 603 78 HOH HOH . HA 5 HOH B 4 604 68 HOH HOH . HA 5 HOH B 5 605 89 HOH HOH . HA 5 HOH B 6 606 27 HOH HOH . HA 5 HOH B 7 607 73 HOH HOH . HA 5 HOH B 8 608 85 HOH HOH . HA 5 HOH B 9 609 94 HOH HOH . HA 5 HOH B 10 610 93 HOH HOH . HA 5 HOH B 11 611 54 HOH HOH . HA 5 HOH B 12 612 76 HOH HOH . HA 5 HOH B 13 613 38 HOH HOH . HA 5 HOH B 14 614 70 HOH HOH . HA 5 HOH B 15 615 24 HOH HOH . HA 5 HOH B 16 616 48 HOH HOH . IA 5 HOH C 1 601 41 HOH HOH . IA 5 HOH C 2 602 6 HOH HOH . IA 5 HOH C 3 603 14 HOH HOH . IA 5 HOH C 4 604 12 HOH HOH . IA 5 HOH C 5 605 84 HOH HOH . IA 5 HOH C 6 606 71 HOH HOH . IA 5 HOH C 7 607 3 HOH HOH . IA 5 HOH C 8 608 28 HOH HOH . IA 5 HOH C 9 609 66 HOH HOH . IA 5 HOH C 10 610 40 HOH HOH . IA 5 HOH C 11 611 69 HOH HOH . IA 5 HOH C 12 612 35 HOH HOH . IA 5 HOH C 13 613 23 HOH HOH . IA 5 HOH C 14 614 58 HOH HOH . IA 5 HOH C 15 615 16 HOH HOH . IA 5 HOH C 16 616 64 HOH HOH . IA 5 HOH C 17 617 18 HOH HOH . IA 5 HOH C 18 618 77 HOH HOH . IA 5 HOH C 19 619 22 HOH HOH . IA 5 HOH C 20 620 42 HOH HOH . IA 5 HOH C 21 621 21 HOH HOH . JA 5 HOH D 1 601 26 HOH HOH . JA 5 HOH D 2 602 86 HOH HOH . JA 5 HOH D 3 603 92 HOH HOH . JA 5 HOH D 4 604 1 HOH HOH . JA 5 HOH D 5 605 59 HOH HOH . JA 5 HOH D 6 606 7 HOH HOH . JA 5 HOH D 7 607 34 HOH HOH . JA 5 HOH D 8 608 36 HOH HOH . JA 5 HOH D 9 609 11 HOH HOH . JA 5 HOH D 10 610 56 HOH HOH . JA 5 HOH D 11 611 62 HOH HOH . JA 5 HOH D 12 612 65 HOH HOH . JA 5 HOH D 13 613 15 HOH HOH . JA 5 HOH D 14 614 53 HOH HOH . JA 5 HOH D 15 615 8 HOH HOH . KA 5 HOH E 1 601 87 HOH HOH . KA 5 HOH E 2 602 44 HOH HOH . KA 5 HOH E 3 603 5 HOH HOH . KA 5 HOH E 4 604 60 HOH HOH . KA 5 HOH E 5 605 4 HOH HOH . KA 5 HOH E 6 606 45 HOH HOH . KA 5 HOH E 7 607 9 HOH HOH . KA 5 HOH E 8 608 33 HOH HOH . KA 5 HOH E 9 609 75 HOH HOH . KA 5 HOH E 10 610 32 HOH HOH . KA 5 HOH E 11 611 29 HOH HOH . KA 5 HOH E 12 612 20 HOH HOH . KA 5 HOH E 13 613 79 HOH HOH . KA 5 HOH E 14 614 83 HOH HOH . KA 5 HOH E 15 615 30 HOH HOH . KA 5 HOH E 16 616 46 HOH HOH . KA 5 HOH E 17 617 19 HOH HOH . KA 5 HOH E 18 618 88 HOH HOH . LA 5 HOH F 1 601 81 HOH HOH . LA 5 HOH F 2 602 95 HOH HOH . LA 5 HOH F 3 603 31 HOH HOH . LA 5 HOH F 4 604 80 HOH HOH . LA 5 HOH F 5 605 97 HOH HOH . LA 5 HOH F 6 606 13 HOH HOH . LA 5 HOH F 7 607 43 HOH HOH . LA 5 HOH F 8 608 55 HOH HOH . MA 5 HOH G 1 601 82 HOH HOH . MA 5 HOH G 2 602 49 HOH HOH . MA 5 HOH G 3 603 10 HOH HOH . NA 5 HOH H 1 601 2 HOH HOH . NA 5 HOH H 2 602 47 HOH HOH . NA 5 HOH H 3 603 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . M 3 -2.534 86.011 69.714 1 50.28 ? PA NAD 502 B 1 HETATM 2 O O1A NAD . . . M 3 -3.724 85.101 69.678 1 56.57 ? O1A NAD 502 B 1 HETATM 3 O O2A NAD . . . M 3 -1.353 86.047 70.627 1 58.94 ? O2A NAD 502 B 1 HETATM 4 O O5B NAD . . . M 3 -3.363 87.473 70.163 1 66.51 ? O5B NAD 502 B 1 HETATM 5 C C5B NAD . . . M 3 -4.711 87.227 70.09 1 49.17 ? C5B NAD 502 B 1 HETATM 6 C C4B NAD . . . M 3 -5.364 87.899 71.264 1 47.07 ? C4B NAD 502 B 1 HETATM 7 O O4B NAD . . . M 3 -6.658 88.339 70.891 1 51.28 ? O4B NAD 502 B 1 HETATM 8 C C3B NAD . . . M 3 -5.526 86.811 72.351 1 54.1 ? C3B NAD 502 B 1 HETATM 9 O O3B NAD . . . M 3 -4.827 87.309 73.439 1 54.05 ? O3B NAD 502 B 1 HETATM 10 C C2B NAD . . . M 3 -7.051 86.783 72.584 1 47.6 ? C2B NAD 502 B 1 HETATM 11 O O2B NAD . . . M 3 -7.373 86.729 73.936 1 50.57 ? O2B NAD 502 B 1 HETATM 12 C C1B NAD . . . M 3 -7.454 88.196 72.042 1 53.31 ? C1B NAD 502 B 1 HETATM 13 N N9A NAD . . . M 3 -8.852 88.238 71.595 1 56.53 ? N9A NAD 502 B 1 HETATM 14 C C8A NAD . . . M 3 -9.565 87.361 70.756 1 57.71 ? C8A NAD 502 B 1 HETATM 15 N N7A NAD . . . M 3 -10.833 87.733 70.578 1 58.24 ? N7A NAD 502 B 1 HETATM 16 C C5A NAD . . . M 3 -10.959 88.918 71.336 1 62.48 ? C5A NAD 502 B 1 HETATM 17 C C6A NAD . . . M 3 -12.044 89.807 71.564 1 57.83 ? C6A NAD 502 B 1 HETATM 18 N N6A NAD . . . M 3 -13.253 89.555 70.987 1 63.09 ? N6A NAD 502 B 1 HETATM 19 N N1A NAD . . . M 3 -11.879 90.91 72.368 1 61.51 ? N1A NAD 502 B 1 HETATM 20 C C2A NAD . . . M 3 -10.636 91.091 72.914 1 57.61 ? C2A NAD 502 B 1 HETATM 21 N N3A NAD . . . M 3 -9.521 90.343 72.788 1 56.59 ? N3A NAD 502 B 1 HETATM 22 C C4A NAD . . . M 3 -9.728 89.246 71.977 1 54.91 ? C4A NAD 502 B 1 HETATM 23 O O3 NAD . . . M 3 -2.272 86.078 68.131 1 56.45 ? O3 NAD 502 B 1 HETATM 24 P PN NAD . . . M 3 -1.089 87.036 67.689 1 50.63 ? PN NAD 502 B 1 HETATM 25 O O1N NAD . . . M 3 0.2 86.438 67.186 1 56.64 ? O1N NAD 502 B 1 HETATM 26 O O2N NAD . . . M 3 -1.327 88.211 68.569 1 52.23 ? O2N NAD 502 B 1 HETATM 27 O O5D NAD . . . M 3 -1.647 87.787 66.179 1 52.92 ? O5D NAD 502 B 1 HETATM 28 C C5D NAD . . . M 3 -2.984 88.008 66.333 1 48.35 ? C5D NAD 502 B 1 HETATM 29 C C4D NAD . . . M 3 -3.54 88.531 65.035 1 53.83 ? C4D NAD 502 B 1 HETATM 30 O O4D NAD . . . M 3 -2.566 89.399 64.405 1 46.3 ? O4D NAD 502 B 1 HETATM 31 C C3D NAD . . . M 3 -3.718 87.292 64.116 1 47 ? C3D NAD 502 B 1 HETATM 32 O O3D NAD . . . M 3 -4.806 87.583 63.33 1 46.14 ? O3D NAD 502 B 1 HETATM 33 C C2D NAD . . . M 3 -2.446 87.311 63.287 1 48.18 ? C2D NAD 502 B 1 HETATM 34 O O2D NAD . . . M 3 -2.641 86.82 62.017 1 43.67 ? O2D NAD 502 B 1 HETATM 35 C C1D NAD . . . M 3 -2.308 88.859 63.133 1 53.11 ? C1D NAD 502 B 1 HETATM 36 N N1N NAD . . . M 3 -0.884 89.268 62.816 1 46.35 ? N1N NAD 502 B 1 HETATM 37 C C2N NAD . . . M 3 -0.748 90.421 62.092 1 55.99 ? C2N NAD 502 B 1 HETATM 38 C C3N NAD . . . M 3 0.533 90.88 61.773 1 59.66 ? C3N NAD 502 B 1 HETATM 39 C C7N NAD . . . M 3 0.614 92.136 60.971 1 51.99 ? C7N NAD 502 B 1 HETATM 40 O O7N NAD . . . M 3 -0.173 93.061 61.107 1 60.7 ? O7N NAD 502 B 1 HETATM 41 N N7N NAD . . . M 3 1.633 92.205 60.058 1 48.27 ? N7N NAD 502 B 1 HETATM 42 C C4N NAD . . . M 3 1.652 90.163 62.194 1 61.66 ? C4N NAD 502 B 1 HETATM 43 C C5N NAD . . . M 3 1.484 88.996 62.929 1 64.9 ? C5N NAD 502 B 1 HETATM 44 C C6N NAD . . . M 3 0.195 88.543 63.244 1 58.21 ? C6N NAD 502 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #