data_7R3A # _model_server_result.job_id -AHH331heMoFaGQVQAROXg _model_server_result.datetime_utc '2024-11-02 07:20:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":502}' # _entry.id 7R3A # _exptl.entry_id 7R3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.23 _cell.angle_gamma 90 _cell.entry_id 7R3A _cell.length_a 65.775 _cell.length_b 328.867 _cell.length_c 85.094 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,U,V,W,GA,KA 1 1 B,D,L,M,N,R,S,T,HA,JA 2 1 C,H,O,P,Q,DA,EA,FA,IA,NA 3 1 F,G,X,Y,Z,AA,BA,CA,LA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 M N N ? 3 P N N ? 3 S N N ? 3 W N N ? 3 Z N N ? 3 CA N N ? 3 FA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7R3A _atom_sites.fract_transf_matrix[1][1] 0.015203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NOS A 1 501 501 NOS NOS . J 3 NAD A 1 502 502 NAD NAD . K 4 PG4 A 1 503 503 PG4 PG4 . L 2 NOS B 1 501 501 NOS NOS . M 3 NAD B 1 502 502 NAD NAD . N 4 PG4 B 1 503 503 PG4 PG4 . O 2 NOS C 1 501 501 NOS NOS . P 3 NAD C 1 502 502 NAD NAD . Q 4 PG4 C 1 503 503 PG4 PG4 . R 2 NOS D 1 501 501 NOS NOS . S 3 NAD D 1 502 502 NAD NAD . T 4 PG4 D 1 503 503 PG4 PG4 . U 4 PG4 E 1 501 503 PG4 PG4 . V 2 NOS E 1 502 501 NOS NOS . W 3 NAD E 1 503 502 NAD NAD . X 4 PG4 F 1 501 503 PG4 PG4 . Y 2 NOS F 1 502 501 NOS NOS . Z 3 NAD F 1 503 502 NAD NAD . AA 4 PG4 G 1 501 503 PG4 PG4 . BA 2 NOS G 1 502 501 NOS NOS . CA 3 NAD G 1 503 502 NAD NAD . DA 4 PG4 H 1 501 503 PG4 PG4 . EA 2 NOS H 1 502 501 NOS NOS . FA 3 NAD H 1 503 502 NAD NAD . GA 5 HOH A 1 601 25 HOH HOH . GA 5 HOH A 2 602 96 HOH HOH . GA 5 HOH A 3 603 61 HOH HOH . GA 5 HOH A 4 604 72 HOH HOH . GA 5 HOH A 5 605 52 HOH HOH . GA 5 HOH A 6 606 39 HOH HOH . GA 5 HOH A 7 607 74 HOH HOH . GA 5 HOH A 8 608 17 HOH HOH . GA 5 HOH A 9 609 50 HOH HOH . GA 5 HOH A 10 610 67 HOH HOH . HA 5 HOH B 1 601 90 HOH HOH . HA 5 HOH B 2 602 91 HOH HOH . HA 5 HOH B 3 603 78 HOH HOH . HA 5 HOH B 4 604 68 HOH HOH . HA 5 HOH B 5 605 89 HOH HOH . HA 5 HOH B 6 606 27 HOH HOH . HA 5 HOH B 7 607 73 HOH HOH . HA 5 HOH B 8 608 85 HOH HOH . HA 5 HOH B 9 609 94 HOH HOH . HA 5 HOH B 10 610 93 HOH HOH . HA 5 HOH B 11 611 54 HOH HOH . HA 5 HOH B 12 612 76 HOH HOH . HA 5 HOH B 13 613 38 HOH HOH . HA 5 HOH B 14 614 70 HOH HOH . HA 5 HOH B 15 615 24 HOH HOH . HA 5 HOH B 16 616 48 HOH HOH . IA 5 HOH C 1 601 41 HOH HOH . IA 5 HOH C 2 602 6 HOH HOH . IA 5 HOH C 3 603 14 HOH HOH . IA 5 HOH C 4 604 12 HOH HOH . IA 5 HOH C 5 605 84 HOH HOH . IA 5 HOH C 6 606 71 HOH HOH . IA 5 HOH C 7 607 3 HOH HOH . IA 5 HOH C 8 608 28 HOH HOH . IA 5 HOH C 9 609 66 HOH HOH . IA 5 HOH C 10 610 40 HOH HOH . IA 5 HOH C 11 611 69 HOH HOH . IA 5 HOH C 12 612 35 HOH HOH . IA 5 HOH C 13 613 23 HOH HOH . IA 5 HOH C 14 614 58 HOH HOH . IA 5 HOH C 15 615 16 HOH HOH . IA 5 HOH C 16 616 64 HOH HOH . IA 5 HOH C 17 617 18 HOH HOH . IA 5 HOH C 18 618 77 HOH HOH . IA 5 HOH C 19 619 22 HOH HOH . IA 5 HOH C 20 620 42 HOH HOH . IA 5 HOH C 21 621 21 HOH HOH . JA 5 HOH D 1 601 26 HOH HOH . JA 5 HOH D 2 602 86 HOH HOH . JA 5 HOH D 3 603 92 HOH HOH . JA 5 HOH D 4 604 1 HOH HOH . JA 5 HOH D 5 605 59 HOH HOH . JA 5 HOH D 6 606 7 HOH HOH . JA 5 HOH D 7 607 34 HOH HOH . JA 5 HOH D 8 608 36 HOH HOH . JA 5 HOH D 9 609 11 HOH HOH . JA 5 HOH D 10 610 56 HOH HOH . JA 5 HOH D 11 611 62 HOH HOH . JA 5 HOH D 12 612 65 HOH HOH . JA 5 HOH D 13 613 15 HOH HOH . JA 5 HOH D 14 614 53 HOH HOH . JA 5 HOH D 15 615 8 HOH HOH . KA 5 HOH E 1 601 87 HOH HOH . KA 5 HOH E 2 602 44 HOH HOH . KA 5 HOH E 3 603 5 HOH HOH . KA 5 HOH E 4 604 60 HOH HOH . KA 5 HOH E 5 605 4 HOH HOH . KA 5 HOH E 6 606 45 HOH HOH . KA 5 HOH E 7 607 9 HOH HOH . KA 5 HOH E 8 608 33 HOH HOH . KA 5 HOH E 9 609 75 HOH HOH . KA 5 HOH E 10 610 32 HOH HOH . KA 5 HOH E 11 611 29 HOH HOH . KA 5 HOH E 12 612 20 HOH HOH . KA 5 HOH E 13 613 79 HOH HOH . KA 5 HOH E 14 614 83 HOH HOH . KA 5 HOH E 15 615 30 HOH HOH . KA 5 HOH E 16 616 46 HOH HOH . KA 5 HOH E 17 617 19 HOH HOH . KA 5 HOH E 18 618 88 HOH HOH . LA 5 HOH F 1 601 81 HOH HOH . LA 5 HOH F 2 602 95 HOH HOH . LA 5 HOH F 3 603 31 HOH HOH . LA 5 HOH F 4 604 80 HOH HOH . LA 5 HOH F 5 605 97 HOH HOH . LA 5 HOH F 6 606 13 HOH HOH . LA 5 HOH F 7 607 43 HOH HOH . LA 5 HOH F 8 608 55 HOH HOH . MA 5 HOH G 1 601 82 HOH HOH . MA 5 HOH G 2 602 49 HOH HOH . MA 5 HOH G 3 603 10 HOH HOH . NA 5 HOH H 1 601 2 HOH HOH . NA 5 HOH H 2 602 47 HOH HOH . NA 5 HOH H 3 603 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . P 3 28.093 31.734 74.97 1 55.25 ? PA NAD 502 C 1 HETATM 2 O O1A NAD . . . P 3 26.889 32.022 74.117 1 56.97 ? O1A NAD 502 C 1 HETATM 3 O O2A NAD . . . P 3 28.968 30.531 75.048 1 61.95 ? O2A NAD 502 C 1 HETATM 4 O O5B NAD . . . P 3 27.296 31.697 76.528 1 54.2 ? O5B NAD 502 C 1 HETATM 5 C C5B NAD . . . P 3 25.985 32.083 76.329 1 55.86 ? C5B NAD 502 C 1 HETATM 6 C C4B NAD . . . P 3 25.09 31.155 77.103 1 56.76 ? C4B NAD 502 C 1 HETATM 7 O O4B NAD . . . P 3 23.982 31.892 77.597 1 55.88 ? O4B NAD 502 C 1 HETATM 8 C C3B NAD . . . P 3 24.557 30.131 76.069 1 54.38 ? C3B NAD 502 C 1 HETATM 9 O O3B NAD . . . P 3 24.964 28.887 76.522 1 55.63 ? O3B NAD 502 C 1 HETATM 10 C C2B NAD . . . P 3 23.027 30.32 76.154 1 55.21 ? C2B NAD 502 C 1 HETATM 11 O O2B NAD . . . P 3 22.352 29.107 76.221 1 52.56 ? O2B NAD 502 C 1 HETATM 12 C C1B NAD . . . P 3 22.882 31.023 77.547 1 53.05 ? C1B NAD 502 C 1 HETATM 13 N N9A NAD . . . P 3 21.673 31.861 77.614 1 53.84 ? N9A NAD 502 C 1 HETATM 14 C C8A NAD . . . P 3 21.114 32.729 76.661 1 57.78 ? C8A NAD 502 C 1 HETATM 15 N N7A NAD . . . P 3 19.996 33.316 77.084 1 52.99 ? N7A NAD 502 C 1 HETATM 16 C C5A NAD . . . P 3 19.807 32.812 78.383 1 51.99 ? C5A NAD 502 C 1 HETATM 17 C C6A NAD . . . P 3 18.806 33.043 79.368 1 50.67 ? C6A NAD 502 C 1 HETATM 18 N N6A NAD . . . P 3 17.775 33.901 79.107 1 55 ? N6A NAD 502 C 1 HETATM 19 N N1A NAD . . . P 3 18.867 32.405 80.573 1 51.91 ? N1A NAD 502 C 1 HETATM 20 C C2A NAD . . . P 3 19.927 31.557 80.752 1 54.01 ? C2A NAD 502 C 1 HETATM 21 N N3A NAD . . . P 3 20.947 31.235 79.927 1 48.73 ? N3A NAD 502 C 1 HETATM 22 C C4A NAD . . . P 3 20.848 31.898 78.729 1 51.94 ? C4A NAD 502 C 1 HETATM 23 O O3 NAD . . . P 3 28.82 33.156 74.798 1 61.09 ? O3 NAD 502 C 1 HETATM 24 P PN NAD . . . P 3 30.173 33.337 75.607 1 55.91 ? PN NAD 502 C 1 HETATM 25 O O1N NAD . . . P 3 31.495 33.295 74.883 1 52.39 ? O1N NAD 502 C 1 HETATM 26 O O2N NAD . . . P 3 29.797 32.793 76.94 1 48.57 ? O2N NAD 502 C 1 HETATM 27 O O5D NAD . . . P 3 30.183 35.06 76.066 1 55.6 ? O5D NAD 502 C 1 HETATM 28 C C5D NAD . . . P 3 29.181 35.251 76.988 1 53.03 ? C5D NAD 502 C 1 HETATM 29 C C4D NAD . . . P 3 29.005 36.747 77.213 1 55.15 ? C4D NAD 502 C 1 HETATM 30 O O4D NAD . . . P 3 30.12 37.245 77.986 1 56.15 ? O4D NAD 502 C 1 HETATM 31 C C3D NAD . . . P 3 29.052 37.441 75.817 1 58.81 ? C3D NAD 502 C 1 HETATM 32 O O3D NAD . . . P 3 28.068 38.426 75.837 1 64.28 ? O3D NAD 502 C 1 HETATM 33 C C2D NAD . . . P 3 30.468 38.04 75.775 1 60.22 ? C2D NAD 502 C 1 HETATM 34 O O2D NAD . . . P 3 30.534 39.261 75.142 1 67.01 ? O2D NAD 502 C 1 HETATM 35 C C1D NAD . . . P 3 30.685 38.325 77.292 1 58.26 ? C1D NAD 502 C 1 HETATM 36 N N1N NAD . . . P 3 32.16 38.231 77.606 1 56.46 ? N1N NAD 502 C 1 HETATM 37 C C2N NAD . . . P 3 32.606 38.971 78.664 1 62.27 ? C2N NAD 502 C 1 HETATM 38 C C3N NAD . . . P 3 33.96 38.923 78.997 1 55.02 ? C3N NAD 502 C 1 HETATM 39 C C7N NAD . . . P 3 34.391 39.743 80.154 1 54.62 ? C7N NAD 502 C 1 HETATM 40 O O7N NAD . . . P 3 33.623 40.052 81.056 1 58.27 ? O7N NAD 502 C 1 HETATM 41 N N7N NAD . . . P 3 35.7 40.151 80.157 1 56.04 ? N7N NAD 502 C 1 HETATM 42 C C4N NAD . . . P 3 34.826 38.122 78.263 1 55.57 ? C4N NAD 502 C 1 HETATM 43 C C5N NAD . . . P 3 34.345 37.378 77.198 1 60.18 ? C5N NAD 502 C 1 HETATM 44 C C6N NAD . . . P 3 32.994 37.448 76.855 1 58.35 ? C6N NAD 502 C 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 153 _model_server_stats.create_model_time_ms 219 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #