data_7R3A # _model_server_result.job_id 8wTAW7BMlrERx-PKoXNkag _model_server_result.datetime_utc '2024-12-01 07:56:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":503}' # _entry.id 7R3A # _exptl.entry_id 7R3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.23 _cell.angle_gamma 90 _cell.entry_id 7R3A _cell.length_a 65.775 _cell.length_b 328.867 _cell.length_c 85.094 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I,J,K,U,V,W,GA,KA 1 1 B,D,L,M,N,R,S,T,HA,JA 2 1 C,H,O,P,Q,DA,EA,FA,IA,NA 3 1 F,G,X,Y,Z,AA,BA,CA,LA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 M N N ? 3 P N N ? 3 S N N ? 3 W N N ? 3 Z N N ? 3 CA N N ? 3 FA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 7R3A _atom_sites.fract_transf_matrix[1][1] 0.015203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NOS A 1 501 501 NOS NOS . J 3 NAD A 1 502 502 NAD NAD . K 4 PG4 A 1 503 503 PG4 PG4 . L 2 NOS B 1 501 501 NOS NOS . M 3 NAD B 1 502 502 NAD NAD . N 4 PG4 B 1 503 503 PG4 PG4 . O 2 NOS C 1 501 501 NOS NOS . P 3 NAD C 1 502 502 NAD NAD . Q 4 PG4 C 1 503 503 PG4 PG4 . R 2 NOS D 1 501 501 NOS NOS . S 3 NAD D 1 502 502 NAD NAD . T 4 PG4 D 1 503 503 PG4 PG4 . U 4 PG4 E 1 501 503 PG4 PG4 . V 2 NOS E 1 502 501 NOS NOS . W 3 NAD E 1 503 502 NAD NAD . X 4 PG4 F 1 501 503 PG4 PG4 . Y 2 NOS F 1 502 501 NOS NOS . Z 3 NAD F 1 503 502 NAD NAD . AA 4 PG4 G 1 501 503 PG4 PG4 . BA 2 NOS G 1 502 501 NOS NOS . CA 3 NAD G 1 503 502 NAD NAD . DA 4 PG4 H 1 501 503 PG4 PG4 . EA 2 NOS H 1 502 501 NOS NOS . FA 3 NAD H 1 503 502 NAD NAD . GA 5 HOH A 1 601 25 HOH HOH . GA 5 HOH A 2 602 96 HOH HOH . GA 5 HOH A 3 603 61 HOH HOH . GA 5 HOH A 4 604 72 HOH HOH . GA 5 HOH A 5 605 52 HOH HOH . GA 5 HOH A 6 606 39 HOH HOH . GA 5 HOH A 7 607 74 HOH HOH . GA 5 HOH A 8 608 17 HOH HOH . GA 5 HOH A 9 609 50 HOH HOH . GA 5 HOH A 10 610 67 HOH HOH . HA 5 HOH B 1 601 90 HOH HOH . HA 5 HOH B 2 602 91 HOH HOH . HA 5 HOH B 3 603 78 HOH HOH . HA 5 HOH B 4 604 68 HOH HOH . HA 5 HOH B 5 605 89 HOH HOH . HA 5 HOH B 6 606 27 HOH HOH . HA 5 HOH B 7 607 73 HOH HOH . HA 5 HOH B 8 608 85 HOH HOH . HA 5 HOH B 9 609 94 HOH HOH . HA 5 HOH B 10 610 93 HOH HOH . HA 5 HOH B 11 611 54 HOH HOH . HA 5 HOH B 12 612 76 HOH HOH . HA 5 HOH B 13 613 38 HOH HOH . HA 5 HOH B 14 614 70 HOH HOH . HA 5 HOH B 15 615 24 HOH HOH . HA 5 HOH B 16 616 48 HOH HOH . IA 5 HOH C 1 601 41 HOH HOH . IA 5 HOH C 2 602 6 HOH HOH . IA 5 HOH C 3 603 14 HOH HOH . IA 5 HOH C 4 604 12 HOH HOH . IA 5 HOH C 5 605 84 HOH HOH . IA 5 HOH C 6 606 71 HOH HOH . IA 5 HOH C 7 607 3 HOH HOH . IA 5 HOH C 8 608 28 HOH HOH . IA 5 HOH C 9 609 66 HOH HOH . IA 5 HOH C 10 610 40 HOH HOH . IA 5 HOH C 11 611 69 HOH HOH . IA 5 HOH C 12 612 35 HOH HOH . IA 5 HOH C 13 613 23 HOH HOH . IA 5 HOH C 14 614 58 HOH HOH . IA 5 HOH C 15 615 16 HOH HOH . IA 5 HOH C 16 616 64 HOH HOH . IA 5 HOH C 17 617 18 HOH HOH . IA 5 HOH C 18 618 77 HOH HOH . IA 5 HOH C 19 619 22 HOH HOH . IA 5 HOH C 20 620 42 HOH HOH . IA 5 HOH C 21 621 21 HOH HOH . JA 5 HOH D 1 601 26 HOH HOH . JA 5 HOH D 2 602 86 HOH HOH . JA 5 HOH D 3 603 92 HOH HOH . JA 5 HOH D 4 604 1 HOH HOH . JA 5 HOH D 5 605 59 HOH HOH . JA 5 HOH D 6 606 7 HOH HOH . JA 5 HOH D 7 607 34 HOH HOH . JA 5 HOH D 8 608 36 HOH HOH . JA 5 HOH D 9 609 11 HOH HOH . JA 5 HOH D 10 610 56 HOH HOH . JA 5 HOH D 11 611 62 HOH HOH . JA 5 HOH D 12 612 65 HOH HOH . JA 5 HOH D 13 613 15 HOH HOH . JA 5 HOH D 14 614 53 HOH HOH . JA 5 HOH D 15 615 8 HOH HOH . KA 5 HOH E 1 601 87 HOH HOH . KA 5 HOH E 2 602 44 HOH HOH . KA 5 HOH E 3 603 5 HOH HOH . KA 5 HOH E 4 604 60 HOH HOH . KA 5 HOH E 5 605 4 HOH HOH . KA 5 HOH E 6 606 45 HOH HOH . KA 5 HOH E 7 607 9 HOH HOH . KA 5 HOH E 8 608 33 HOH HOH . KA 5 HOH E 9 609 75 HOH HOH . KA 5 HOH E 10 610 32 HOH HOH . KA 5 HOH E 11 611 29 HOH HOH . KA 5 HOH E 12 612 20 HOH HOH . KA 5 HOH E 13 613 79 HOH HOH . KA 5 HOH E 14 614 83 HOH HOH . KA 5 HOH E 15 615 30 HOH HOH . KA 5 HOH E 16 616 46 HOH HOH . KA 5 HOH E 17 617 19 HOH HOH . KA 5 HOH E 18 618 88 HOH HOH . LA 5 HOH F 1 601 81 HOH HOH . LA 5 HOH F 2 602 95 HOH HOH . LA 5 HOH F 3 603 31 HOH HOH . LA 5 HOH F 4 604 80 HOH HOH . LA 5 HOH F 5 605 97 HOH HOH . LA 5 HOH F 6 606 13 HOH HOH . LA 5 HOH F 7 607 43 HOH HOH . LA 5 HOH F 8 608 55 HOH HOH . MA 5 HOH G 1 601 82 HOH HOH . MA 5 HOH G 2 602 49 HOH HOH . MA 5 HOH G 3 603 10 HOH HOH . NA 5 HOH H 1 601 2 HOH HOH . NA 5 HOH H 2 602 47 HOH HOH . NA 5 HOH H 3 603 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . W 3 -7.274 10.855 32.245 1 51.52 ? PA NAD 503 E 1 HETATM 2 O O1A NAD . . . W 3 -8.013 10.792 33.548 1 38.78 ? O1A NAD 503 E 1 HETATM 3 O O2A NAD . . . W 3 -6.247 11.81 31.743 1 44.34 ? O2A NAD 503 E 1 HETATM 4 O O5B NAD . . . W 3 -8.614 11.22 31.167 1 51.88 ? O5B NAD 503 E 1 HETATM 5 C C5B NAD . . . W 3 -9.785 11.167 31.896 1 51.63 ? C5B NAD 503 E 1 HETATM 6 C C4B NAD . . . W 3 -10.67 12.329 31.505 1 51.73 ? C4B NAD 503 E 1 HETATM 7 O O4B NAD . . . W 3 -12.048 11.913 31.529 1 45.69 ? O4B NAD 503 E 1 HETATM 8 C C3B NAD . . . W 3 -10.481 13.406 32.592 1 49.47 ? C3B NAD 503 E 1 HETATM 9 O O3B NAD . . . W 3 -10.111 14.548 31.901 1 47.28 ? O3B NAD 503 E 1 HETATM 10 C C2B NAD . . . W 3 -11.89 13.518 33.201 1 47.2 ? C2B NAD 503 E 1 HETATM 11 O O2B NAD . . . W 3 -12.232 14.831 33.479 1 50.28 ? O2B NAD 503 E 1 HETATM 12 C C1B NAD . . . W 3 -12.768 13.037 32.001 1 48.2 ? C1B NAD 503 E 1 HETATM 13 N N9A NAD . . . W 3 -14.091 12.584 32.469 1 46.62 ? N9A NAD 503 E 1 HETATM 14 C C8A NAD . . . W 3 -14.439 11.874 33.635 1 42.86 ? C8A NAD 503 E 1 HETATM 15 N N7A NAD . . . W 3 -15.75 11.638 33.735 1 49.85 ? N7A NAD 503 E 1 HETATM 16 C C5A NAD . . . W 3 -16.303 12.223 32.578 1 53.77 ? C5A NAD 503 E 1 HETATM 17 C C6A NAD . . . W 3 -17.64 12.316 32.093 1 47.02 ? C6A NAD 503 E 1 HETATM 18 N N6A NAD . . . W 3 -18.658 11.769 32.81 1 43.05 ? N6A NAD 503 E 1 HETATM 19 N N1A NAD . . . W 3 -17.903 12.956 30.914 1 44 ? N1A NAD 503 E 1 HETATM 20 C C2A NAD . . . W 3 -16.818 13.481 30.258 1 48.13 ? C2A NAD 503 E 1 HETATM 21 N N3A NAD . . . W 3 -15.504 13.476 30.58 1 44.42 ? N3A NAD 503 E 1 HETATM 22 C C4A NAD . . . W 3 -15.28 12.824 31.771 1 46.77 ? C4A NAD 503 E 1 HETATM 23 O O3 NAD . . . W 3 -6.978 9.272 32.115 1 41.15 ? O3 NAD 503 E 1 HETATM 24 P PN NAD . . . W 3 -6.192 8.83 30.822 1 45.79 ? PN NAD 503 E 1 HETATM 25 O O1N NAD . . . W 3 -4.747 8.417 30.933 1 55.84 ? O1N NAD 503 E 1 HETATM 26 O O2N NAD . . . W 3 -6.853 9.672 29.794 1 46.36 ? O2N NAD 503 E 1 HETATM 27 O O5D NAD . . . W 3 -6.903 7.26 30.324 1 57.88 ? O5D NAD 503 E 1 HETATM 28 C C5D NAD . . . W 3 -8.228 7.328 30.683 1 49.92 ? C5D NAD 503 E 1 HETATM 29 C C4D NAD . . . W 3 -8.887 5.96 30.513 1 46.48 ? C4D NAD 503 E 1 HETATM 30 O O4D NAD . . . W 3 -8.323 5.287 29.363 1 45.2 ? O4D NAD 503 E 1 HETATM 31 C C3D NAD . . . W 3 -8.515 5.119 31.759 1 45.41 ? C3D NAD 503 E 1 HETATM 32 O O3D NAD . . . W 3 -9.585 4.267 31.979 1 45.28 ? O3D NAD 503 E 1 HETATM 33 C C2D NAD . . . W 3 -7.281 4.361 31.271 1 48.74 ? C2D NAD 503 E 1 HETATM 34 O O2D NAD . . . W 3 -7.11 3.119 31.857 1 47.63 ? O2D NAD 503 E 1 HETATM 35 C C1D NAD . . . W 3 -7.741 4.088 29.82 1 44.81 ? C1D NAD 503 E 1 HETATM 36 N N1N NAD . . . W 3 -6.545 3.89 28.929 1 39.64 ? N1N NAD 503 E 1 HETATM 37 C C2N NAD . . . W 3 -6.756 3.125 27.818 1 41.13 ? C2N NAD 503 E 1 HETATM 38 C C3N NAD . . . W 3 -5.702 2.917 26.937 1 43.54 ? C3N NAD 503 E 1 HETATM 39 C C7N NAD . . . W 3 -5.993 2.07 25.752 1 45.87 ? C7N NAD 503 E 1 HETATM 40 O O7N NAD . . . W 3 -7.123 1.952 25.3 1 47.52 ? O7N NAD 503 E 1 HETATM 41 N N7N NAD . . . W 3 -4.924 1.413 25.197 1 46.78 ? N7N NAD 503 E 1 HETATM 42 C C4N NAD . . . W 3 -4.459 3.486 27.195 1 48.17 ? C4N NAD 503 E 1 HETATM 43 C C5N NAD . . . W 3 -4.269 4.261 28.328 1 38.35 ? C5N NAD 503 E 1 HETATM 44 C C6N NAD . . . W 3 -5.331 4.468 29.211 1 45.65 ? C6N NAD 503 E 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #