data_7R3E # _model_server_result.job_id KhR9PQSvgdKux3Fxbmneog _model_server_result.datetime_utc '2024-10-20 13:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7R3E # _exptl.entry_id 7R3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-bromophenoxy)-N-[(3S)-2-oxothiolan-3-yl]butanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R3E _cell.length_a 159.651 _cell.length_b 159.651 _cell.length_c 288.743 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 86 A HIS 69 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A ND1 HIS 88 A HIS 71 1_555 D FE FE . A FE 602 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc3 A OD2 ASP 90 A ASP 73 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 A NE2 HIS 91 A HIS 74 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 A NE2 HIS 176 A HIS 159 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 A OD2 ASP 195 A ASP 178 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 A OD2 ASP 195 A ASP 178 1_555 D FE FE . A FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc8 A NE2 HIS 238 A HIS 221 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc9 C FE FE . A FE 601 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 D FE FE . A FE 602 1_555 I O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 B NE2 HIS 86 B HIS 69 1_555 G FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc12 B ND1 HIS 88 B HIS 71 1_555 G FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc13 B OD2 ASP 90 B ASP 73 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc14 B NE2 HIS 91 B HIS 74 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc15 B NE2 HIS 176 B HIS 159 1_555 G FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc16 B OD2 ASP 195 B ASP 178 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc17 B OD2 ASP 195 B ASP 178 1_555 G FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc18 B NE2 HIS 238 B HIS 221 1_555 F FE FE . B FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc19 F FE FE . B FE 601 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc20 G FE FE . B FE 602 1_555 J O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C14 H16 Br N O3 S' _chem_comp.formula_weight 358.251 _chem_comp.id K5G _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-bromophenoxy)-N-[(3S)-2-oxothiolan-3-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR1 C02 K5G sing 173 n n C02 C03 K5G doub 174 n y C02 C20 K5G sing 175 n y C03 C04 K5G sing 176 n y C20 C19 K5G doub 177 n y O10 C09 K5G doub 178 n n C04 O05 K5G sing 179 n n C04 C18 K5G doub 180 n y O05 C06 K5G sing 181 n n C19 C18 K5G sing 182 n y C07 C06 K5G sing 183 n n C07 C08 K5G sing 184 n n C09 C08 K5G sing 185 n n C09 N11 K5G sing 186 n n C12 N11 K5G sing 187 n n C12 C16 K5G sing 188 n n C12 C13 K5G sing 189 n n O17 C16 K5G doub 190 n n C16 S15 K5G sing 191 n n C13 C14 K5G sing 192 n n S15 C14 K5G sing 193 n n C03 H1 K5G sing 194 n n C18 H2 K5G sing 195 n n C19 H3 K5G sing 196 n n C20 H4 K5G sing 197 n n C06 H5 K5G sing 198 n n C06 H6 K5G sing 199 n n C07 H7 K5G sing 200 n n C08 H8 K5G sing 201 n n N11 H9 K5G sing 202 n n C12 H10 K5G sing 203 n n C13 H11 K5G sing 204 n n C13 H12 K5G sing 205 n n C14 H13 K5G sing 206 n n C14 H14 K5G sing 207 n n C07 H15 K5G sing 208 n n C08 H16 K5G sing 209 n n # _atom_sites.entry_id 7R3E _atom_sites.fract_transf_matrix[1][1] 0.006264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 601 601 FE FE . D 2 FE A 1 602 602 FE FE . E 3 K5G A 1 603 700 K5G K5G . F 2 FE B 1 601 601 FE FE . G 2 FE B 1 602 602 FE FE . H 3 K5G B 1 603 700 K5G K5G . I 4 HOH A 1 701 603 HOH HOH . I 4 HOH A 2 702 1 HOH HOH . J 4 HOH B 1 701 603 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR1 K5G . . . E 3 -11.701 -32.556 -50.175 1 285.49 ? BR1 K5G 603 A 1 HETATM 2 C C02 K5G . . . E 3 -12.522 -33.375 -51.679 1 152.49 ? C02 K5G 603 A 1 HETATM 3 C C03 K5G . . . E 3 -13.881 -33.609 -51.653 1 147.94 ? C03 K5G 603 A 1 HETATM 4 C C04 K5G . . . E 3 -14.477 -34.179 -52.767 1 143.79 ? C04 K5G 603 A 1 HETATM 5 C C18 K5G . . . E 3 -13.722 -34.538 -53.871 1 138.62 ? C18 K5G 603 A 1 HETATM 6 C C19 K5G . . . E 3 -12.358 -34.294 -53.867 1 141.06 ? C19 K5G 603 A 1 HETATM 7 C C20 K5G . . . E 3 -11.748 -33.702 -52.773 1 146.55 ? C20 K5G 603 A 1 HETATM 8 O O05 K5G . . . E 3 -15.841 -34.305 -52.722 1 136.93 ? O05 K5G 603 A 1 HETATM 9 C C06 K5G . . . E 3 -16.505 -35.029 -53.771 1 130.15 ? C06 K5G 603 A 1 HETATM 10 C C07 K5G . . . E 3 -17.977 -34.895 -53.471 1 128.43 ? C07 K5G 603 A 1 HETATM 11 C C08 K5G . . . E 3 -18.849 -35.99 -54.077 1 126.18 ? C08 K5G 603 A 1 HETATM 12 C C09 K5G . . . E 3 -18.351 -37.393 -53.815 1 126.53 ? C09 K5G 603 A 1 HETATM 13 O O10 K5G . . . E 3 -18.289 -37.85 -52.678 1 137.2 ? O10 K5G 603 A 1 HETATM 14 N N11 K5G . . . E 3 -17.963 -38.087 -54.892 1 125.37 ? N11 K5G 603 A 1 HETATM 15 C C12 K5G . . . E 3 -17.269 -39.354 -54.775 1 122.91 ? C12 K5G 603 A 1 HETATM 16 C C13 K5G . . . E 3 -17.485 -40.335 -55.938 1 123.82 ? C13 K5G 603 A 1 HETATM 17 C C14 K5G . . . E 3 -16.437 -41.426 -55.757 1 126.87 ? C14 K5G 603 A 1 HETATM 18 S S15 K5G . . . E 3 -14.915 -40.56 -55.341 1 139.89 ? S15 K5G 603 A 1 HETATM 19 C C16 K5G . . . E 3 -15.748 -39.117 -54.785 1 122.62 ? C16 K5G 603 A 1 HETATM 20 O O17 K5G . . . E 3 -15.213 -38.091 -54.473 1 125.28 ? O17 K5G 603 A 1 HETATM 21 H H1 K5G . . . E 3 -14.478 -33.354 -50.779 1 177.52 ? H1 K5G 603 A 1 HETATM 22 H H2 K5G . . . E 3 -14.136 -35.01 -54.761 1 166.34 ? H2 K5G 603 A 1 HETATM 23 H H3 K5G . . . E 3 -11.757 -34.57 -54.732 1 169.27 ? H3 K5G 603 A 1 HETATM 24 H H4 K5G . . . E 3 -10.678 -33.498 -52.777 1 175.85 ? H4 K5G 603 A 1 HETATM 25 H H5 K5G . . . E 3 -16.201 -36.074 -53.776 1 156.17 ? H5 K5G 603 A 1 HETATM 26 H H6 K5G . . . E 3 -16.266 -34.608 -54.746 1 156.17 ? H6 K5G 603 A 1 HETATM 27 H H7 K5G . . . E 3 -18.331 -33.922 -53.809 1 154.11 ? H7 K5G 603 A 1 HETATM 28 H H8 K5G . . . E 3 -19.86 -35.869 -53.693 1 151.41 ? H8 K5G 603 A 1 HETATM 29 H H9 K5G . . . E 3 -18.139 -37.756 -55.835 1 150.44 ? H9 K5G 603 A 1 HETATM 30 H H10 K5G . . . E 3 -17.541 -39.846 -53.843 1 147.49 ? H10 K5G 603 A 1 HETATM 31 H H11 K5G . . . E 3 -18.496 -40.741 -55.935 1 148.58 ? H11 K5G 603 A 1 HETATM 32 H H12 K5G . . . E 3 -17.39 -39.838 -56.903 1 148.58 ? H12 K5G 603 A 1 HETATM 33 H H13 K5G . . . E 3 -16.691 -42.127 -54.964 1 152.23 ? H13 K5G 603 A 1 HETATM 34 H H14 K5G . . . E 3 -16.289 -42.021 -56.657 1 152.23 ? H14 K5G 603 A 1 HETATM 35 H H15 K5G . . . E 3 -18.128 -34.868 -52.392 1 154.11 ? H15 K5G 603 A 1 HETATM 36 H H16 K5G . . . E 3 -18.924 -35.808 -55.148 1 151.41 ? H16 K5G 603 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 57 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 36 #