data_7R3V # _model_server_result.job_id xBJKvQa82Oh87vNUuvvvog _model_server_result.datetime_utc '2024-11-24 01:04:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 7R3V # _exptl.entry_id 7R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R3V _cell.length_a 209.589 _cell.length_b 209.589 _cell.length_c 342.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 540 n n CHA C4D HEM doub 541 n n CHA HHA HEM sing 542 n n CHB C4A HEM sing 543 n n CHB C1B HEM doub 544 n n CHB HHB HEM sing 545 n n CHC C4B HEM sing 546 n n CHC C1C HEM doub 547 n n CHC HHC HEM sing 548 n n CHD C4C HEM doub 549 n n CHD C1D HEM sing 550 n n CHD HHD HEM sing 551 n n C1A C2A HEM doub 552 n y C1A NA HEM sing 553 n y C2A C3A HEM sing 554 n y C2A CAA HEM sing 555 n n C3A C4A HEM doub 556 n y C3A CMA HEM sing 557 n n C4A NA HEM sing 558 n y CMA HMA HEM sing 559 n n CMA HMAA HEM sing 560 n n CMA HMAB HEM sing 561 n n CAA CBA HEM sing 562 n n CAA HAA HEM sing 563 n n CAA HAAA HEM sing 564 n n CBA CGA HEM sing 565 n n CBA HBA HEM sing 566 n n CBA HBAA HEM sing 567 n n CGA O1A HEM doub 568 n n CGA O2A HEM sing 569 n n C1B C2B HEM sing 570 n n C1B NB HEM sing 571 n n C2B C3B HEM doub 572 n n C2B CMB HEM sing 573 n n C3B C4B HEM sing 574 n n C3B CAB HEM sing 575 n n C4B NB HEM doub 576 n n CMB HMB HEM sing 577 n n CMB HMBA HEM sing 578 n n CMB HMBB HEM sing 579 n n CAB CBB HEM doub 580 n n CAB HAB HEM sing 581 n n CBB HBB HEM sing 582 n n CBB HBBA HEM sing 583 n n C1C C2C HEM sing 584 n y C1C NC HEM sing 585 n y C2C C3C HEM doub 586 n y C2C CMC HEM sing 587 n n C3C C4C HEM sing 588 n y C3C CAC HEM sing 589 n n C4C NC HEM sing 590 n y CMC HMC HEM sing 591 n n CMC HMCA HEM sing 592 n n CMC HMCB HEM sing 593 n n CAC CBC HEM doub 594 n n CAC HAC HEM sing 595 n n CBC HBC HEM sing 596 n n CBC HBCA HEM sing 597 n n C1D C2D HEM sing 598 n n C1D ND HEM doub 599 n n C2D C3D HEM doub 600 n n C2D CMD HEM sing 601 n n C3D C4D HEM sing 602 n n C3D CAD HEM sing 603 n n C4D ND HEM sing 604 n n CMD HMD HEM sing 605 n n CMD HMDA HEM sing 606 n n CMD HMDB HEM sing 607 n n CAD CBD HEM sing 608 n n CAD HAD HEM sing 609 n n CAD HADA HEM sing 610 n n CBD CGD HEM sing 611 n n CBD HBD HEM sing 612 n n CBD HBDA HEM sing 613 n n CGD O1D HEM doub 614 n n CGD O2D HEM sing 615 n n O2A H2A HEM sing 616 n n O2D H2D HEM sing 617 n n FE NA HEM sing 618 n n FE NB HEM sing 619 n n FE NC HEM sing 620 n n FE ND HEM sing 621 n n # _atom_sites.entry_id 7R3V _atom_sites.fract_transf_matrix[1][1] 0.004771 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 16 PEE C 1 406 409 PEE PEE . T 17 I2Q C 1 407 528 I2Q C67 . U 18 DMS C 1 408 529 DMS DMS . V 19 PO4 C 1 409 2 PO4 PO4 . W 19 PO4 C 1 410 3 PO4 PO4 . X 20 HEC D 1 501 501 HEC HEC . Y 19 PO4 D 1 502 502 PO4 PO4 . Z 13 CDL D 1 503 503 CDL CDL . AA 21 FES E 1 201 197 FES FES . BA 22 PX4 E 1 202 202 PX4 PX4 . CA 19 PO4 E 1 203 203 PO4 PO4 . DA 16 PEE E 1 204 204 PEE PEE . EA 19 PO4 F 1 501 501 PO4 PO4 . FA 19 PO4 F 1 502 1 PO4 PO4 . GA 13 CDL G 1 101 408 CDL CDL . HA 19 PO4 G 1 102 101 PO4 PO4 . IA 19 PO4 G 1 103 102 PO4 PO4 . JA 19 PO4 G 1 104 103 PO4 PO4 . KA 23 HOH A 1 601 4 HOH HOH . KA 23 HOH A 2 602 604 HOH HOH . KA 23 HOH A 3 603 603 HOH HOH . KA 23 HOH A 4 604 606 HOH HOH . KA 23 HOH A 5 605 605 HOH HOH . KA 23 HOH A 6 606 609 HOH HOH . KA 23 HOH A 7 607 1 HOH HOH . KA 23 HOH A 8 608 608 HOH HOH . KA 23 HOH A 9 609 509 HOH HOH . KA 23 HOH A 10 610 607 HOH HOH . LA 23 HOH B 1 501 504 HOH HOH . LA 23 HOH B 2 502 502 HOH HOH . LA 23 HOH B 3 503 508 HOH HOH . LA 23 HOH B 4 504 503 HOH HOH . LA 23 HOH B 5 505 506 HOH HOH . LA 23 HOH B 6 506 501 HOH HOH . LA 23 HOH B 7 507 505 HOH HOH . LA 23 HOH B 8 508 507 HOH HOH . LA 23 HOH B 9 509 511 HOH HOH . MA 23 HOH C 1 501 2 HOH HOH . MA 23 HOH C 2 502 505 HOH HOH . MA 23 HOH C 3 503 501 HOH HOH . MA 23 HOH C 4 504 504 HOH HOH . MA 23 HOH C 5 505 502 HOH HOH . MA 23 HOH C 6 506 508 HOH HOH . MA 23 HOH C 7 507 511 HOH HOH . MA 23 HOH C 8 508 514 HOH HOH . MA 23 HOH C 9 509 507 HOH HOH . MA 23 HOH C 10 510 522 HOH HOH . NA 23 HOH D 1 601 601 HOH HOH . NA 23 HOH D 2 602 603 HOH HOH . NA 23 HOH D 3 603 602 HOH HOH . NA 23 HOH D 4 604 605 HOH HOH . OA 23 HOH E 1 301 305 HOH HOH . OA 23 HOH E 2 302 304 HOH HOH . OA 23 HOH E 3 303 306 HOH HOH . OA 23 HOH E 4 304 3 HOH HOH . PA 23 HOH F 1 601 605 HOH HOH . PA 23 HOH F 2 602 603 HOH HOH . PA 23 HOH F 3 603 602 HOH HOH . PA 23 HOH F 4 604 604 HOH HOH . PA 23 HOH F 5 605 607 HOH HOH . QA 23 HOH G 1 201 203 HOH HOH . QA 23 HOH G 2 202 205 HOH HOH . RA 23 HOH J 1 101 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . O 14 -68.153 -64.922 38.142 1 56.56 ? CHA HEM 402 C 1 HETATM 2 C CHB HEM . . . O 14 -65.641 -68.235 35.65 1 66.82 ? CHB HEM 402 C 1 HETATM 3 C CHC HEM . . . O 14 -63.866 -69.847 39.826 1 64.21 ? CHC HEM 402 C 1 HETATM 4 C CHD HEM . . . O 14 -67.115 -67.271 42.193 1 54.13 ? CHD HEM 402 C 1 HETATM 5 C C1A HEM . . . O 14 -67.534 -65.629 37.118 1 63.85 ? C1A HEM 402 C 1 HETATM 6 C C2A HEM . . . O 14 -67.633 -65.288 35.733 1 56.6 ? C2A HEM 402 C 1 HETATM 7 C C3A HEM . . . O 14 -66.941 -66.2 35.007 1 54.94 ? C3A HEM 402 C 1 HETATM 8 C C4A HEM . . . O 14 -66.386 -67.112 35.953 1 63.88 ? C4A HEM 402 C 1 HETATM 9 C CMA HEM . . . O 14 -66.785 -66.238 33.507 1 53.41 ? CMA HEM 402 C 1 HETATM 10 C CAA HEM . . . O 14 -68.405 -64.118 35.213 1 51.9 ? CAA HEM 402 C 1 HETATM 11 C CBA HEM . . . O 14 -67.479 -62.924 35.043 1 62.34 ? CBA HEM 402 C 1 HETATM 12 C CGA HEM . . . O 14 -66.87 -62.466 36.338 1 61.92 ? CGA HEM 402 C 1 HETATM 13 O O1A HEM . . . O 14 -65.692 -62.774 36.633 1 65.1 ? O1A HEM 402 C 1 HETATM 14 O O2A HEM . . . O 14 -67.555 -61.767 37.1 1 58.59 ? O2A HEM 402 C 1 HETATM 15 C C1B HEM . . . O 14 -64.946 -68.947 36.613 1 58.59 ? C1B HEM 402 C 1 HETATM 16 C C2B HEM . . . O 14 -64.002 -69.938 36.252 1 59 ? C2B HEM 402 C 1 HETATM 17 C C3B HEM . . . O 14 -63.495 -70.397 37.411 1 67.69 ? C3B HEM 402 C 1 HETATM 18 C C4B HEM . . . O 14 -64.169 -69.64 38.49 1 67.3 ? C4B HEM 402 C 1 HETATM 19 C CMB HEM . . . O 14 -63.609 -70.375 34.881 1 57.27 ? CMB HEM 402 C 1 HETATM 20 C CAB HEM . . . O 14 -62.472 -71.415 37.632 1 65.36 ? CAB HEM 402 C 1 HETATM 21 C CBB HEM . . . O 14 -62.083 -72.132 36.607 1 71.39 ? CBB HEM 402 C 1 HETATM 22 C C1C HEM . . . O 14 -64.527 -69.239 40.854 1 59.45 ? C1C HEM 402 C 1 HETATM 23 C C2C HEM . . . O 14 -64.206 -69.379 42.212 1 62.32 ? C2C HEM 402 C 1 HETATM 24 C C3C HEM . . . O 14 -65.156 -68.633 42.89 1 60.83 ? C3C HEM 402 C 1 HETATM 25 C C4C HEM . . . O 14 -66.031 -68.051 41.919 1 56.04 ? C4C HEM 402 C 1 HETATM 26 C CMC HEM . . . O 14 -63.058 -70.184 42.81 1 57.79 ? CMC HEM 402 C 1 HETATM 27 C CAC HEM . . . O 14 -65.232 -68.48 44.356 1 61.37 ? CAC HEM 402 C 1 HETATM 28 C CBC HEM . . . O 14 -64.572 -69.297 45.169 1 56.35 ? CBC HEM 402 C 1 HETATM 29 C C1D HEM . . . O 14 -67.643 -66.408 41.271 1 56.53 ? C1D HEM 402 C 1 HETATM 30 C C2D HEM . . . O 14 -68.591 -65.321 41.651 1 62.45 ? C2D HEM 402 C 1 HETATM 31 C C3D HEM . . . O 14 -68.871 -64.671 40.512 1 63.31 ? C3D HEM 402 C 1 HETATM 32 C C4D HEM . . . O 14 -68.098 -65.354 39.446 1 57.07 ? C4D HEM 402 C 1 HETATM 33 C CMD HEM . . . O 14 -69.193 -64.931 42.982 1 54.91 ? CMD HEM 402 C 1 HETATM 34 C CAD HEM . . . O 14 -69.817 -63.501 40.434 1 57.6 ? CAD HEM 402 C 1 HETATM 35 C CBD HEM . . . O 14 -68.997 -62.226 40.448 1 57.86 ? CBD HEM 402 C 1 HETATM 36 C CGD HEM . . . O 14 -69.883 -61.013 40.46 1 57.23 ? CGD HEM 402 C 1 HETATM 37 O O1D HEM . . . O 14 -69.441 -59.916 40.854 1 49.78 ? O1D HEM 402 C 1 HETATM 38 O O2D HEM . . . O 14 -71.067 -61.08 40.075 1 66.61 ? O2D HEM 402 C 1 HETATM 39 N NA HEM . . . O 14 -66.761 -66.773 37.236 1 64.28 ? NA HEM 402 C 1 HETATM 40 N NB HEM . . . O 14 -65.02 -68.807 37.929 1 55.78 ? NB HEM 402 C 1 HETATM 41 N NC HEM . . . O 14 -65.617 -68.466 40.7 1 56.31 ? NC HEM 402 C 1 HETATM 42 N ND HEM . . . O 14 -67.387 -66.399 39.949 1 56.83 ? ND HEM 402 C 1 HETATM 43 FE FE HEM . . . O 14 -66.266 -67.565 38.978 1 51.81 ? FE HEM 402 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #