data_7R3V # _model_server_result.job_id nJ-OPBbhYvAzpko2xu4hWA _model_server_result.datetime_utc '2024-11-24 00:58:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":403}' # _entry.id 7R3V # _exptl.entry_id 7R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R3V _cell.length_a 209.589 _cell.length_b 209.589 _cell.length_c 342.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 738 n n C1B O1B LMT sing 739 n n C1B O5B LMT sing 740 n n C1B H1B LMT sing 741 n n C2B C3B LMT sing 742 n n C2B O2B LMT sing 743 n n C2B H2B LMT sing 744 n n C3B C4B LMT sing 745 n n C3B O3B LMT sing 746 n n C3B H3B LMT sing 747 n n C4B C5B LMT sing 748 n n C4B O4' LMT sing 749 n n C4B H4B LMT sing 750 n n C5B C6B LMT sing 751 n n C5B O5B LMT sing 752 n n C5B H5B LMT sing 753 n n C6B O6B LMT sing 754 n n C6B "H6'2" LMT sing 755 n n C6B "H6'1" LMT sing 756 n n O1B C4' LMT sing 757 n n O2B H2O1 LMT sing 758 n n O3B H3O1 LMT sing 759 n n O4' H4O1 LMT sing 760 n n O6B H6B LMT sing 761 n n C1' C2' LMT sing 762 n n C1' O1' LMT sing 763 n n C1' O5' LMT sing 764 n n C1' H1' LMT sing 765 n n C2' C3' LMT sing 766 n n C2' O2' LMT sing 767 n n C2' H2' LMT sing 768 n n C3' C4' LMT sing 769 n n C3' O3' LMT sing 770 n n C3' H3' LMT sing 771 n n C4' C5' LMT sing 772 n n C4' H4' LMT sing 773 n n C5' C6' LMT sing 774 n n C5' O5' LMT sing 775 n n C5' H5' LMT sing 776 n n C6' O6' LMT sing 777 n n C6' H6D LMT sing 778 n n C6' H6E LMT sing 779 n n O1' C1 LMT sing 780 n n O2' H2O2 LMT sing 781 n n O3' H3O2 LMT sing 782 n n O6' H6' LMT sing 783 n n C1 C2 LMT sing 784 n n C1 H12 LMT sing 785 n n C1 H11 LMT sing 786 n n C2 C3 LMT sing 787 n n C2 H22 LMT sing 788 n n C2 H21 LMT sing 789 n n C3 C4 LMT sing 790 n n C3 H32 LMT sing 791 n n C3 H31 LMT sing 792 n n C4 C5 LMT sing 793 n n C4 H42 LMT sing 794 n n C4 H41 LMT sing 795 n n C5 C6 LMT sing 796 n n C5 H52 LMT sing 797 n n C5 H51 LMT sing 798 n n C6 C7 LMT sing 799 n n C6 H62 LMT sing 800 n n C6 H61 LMT sing 801 n n C7 C8 LMT sing 802 n n C7 H72 LMT sing 803 n n C7 H71 LMT sing 804 n n C8 C9 LMT sing 805 n n C8 H82 LMT sing 806 n n C8 H81 LMT sing 807 n n C9 C10 LMT sing 808 n n C9 H92 LMT sing 809 n n C9 H91 LMT sing 810 n n C10 C11 LMT sing 811 n n C10 H102 LMT sing 812 n n C10 H101 LMT sing 813 n n C11 C12 LMT sing 814 n n C11 H112 LMT sing 815 n n C11 H111 LMT sing 816 n n C12 H123 LMT sing 817 n n C12 H122 LMT sing 818 n n C12 H121 LMT sing 819 n n # _atom_sites.entry_id 7R3V _atom_sites.fract_transf_matrix[1][1] 0.004771 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 16 PEE C 1 406 409 PEE PEE . T 17 I2Q C 1 407 528 I2Q C67 . U 18 DMS C 1 408 529 DMS DMS . V 19 PO4 C 1 409 2 PO4 PO4 . W 19 PO4 C 1 410 3 PO4 PO4 . X 20 HEC D 1 501 501 HEC HEC . Y 19 PO4 D 1 502 502 PO4 PO4 . Z 13 CDL D 1 503 503 CDL CDL . AA 21 FES E 1 201 197 FES FES . BA 22 PX4 E 1 202 202 PX4 PX4 . CA 19 PO4 E 1 203 203 PO4 PO4 . DA 16 PEE E 1 204 204 PEE PEE . EA 19 PO4 F 1 501 501 PO4 PO4 . FA 19 PO4 F 1 502 1 PO4 PO4 . GA 13 CDL G 1 101 408 CDL CDL . HA 19 PO4 G 1 102 101 PO4 PO4 . IA 19 PO4 G 1 103 102 PO4 PO4 . JA 19 PO4 G 1 104 103 PO4 PO4 . KA 23 HOH A 1 601 4 HOH HOH . KA 23 HOH A 2 602 604 HOH HOH . KA 23 HOH A 3 603 603 HOH HOH . KA 23 HOH A 4 604 606 HOH HOH . KA 23 HOH A 5 605 605 HOH HOH . KA 23 HOH A 6 606 609 HOH HOH . KA 23 HOH A 7 607 1 HOH HOH . KA 23 HOH A 8 608 608 HOH HOH . KA 23 HOH A 9 609 509 HOH HOH . KA 23 HOH A 10 610 607 HOH HOH . LA 23 HOH B 1 501 504 HOH HOH . LA 23 HOH B 2 502 502 HOH HOH . LA 23 HOH B 3 503 508 HOH HOH . LA 23 HOH B 4 504 503 HOH HOH . LA 23 HOH B 5 505 506 HOH HOH . LA 23 HOH B 6 506 501 HOH HOH . LA 23 HOH B 7 507 505 HOH HOH . LA 23 HOH B 8 508 507 HOH HOH . LA 23 HOH B 9 509 511 HOH HOH . MA 23 HOH C 1 501 2 HOH HOH . MA 23 HOH C 2 502 505 HOH HOH . MA 23 HOH C 3 503 501 HOH HOH . MA 23 HOH C 4 504 504 HOH HOH . MA 23 HOH C 5 505 502 HOH HOH . MA 23 HOH C 6 506 508 HOH HOH . MA 23 HOH C 7 507 511 HOH HOH . MA 23 HOH C 8 508 514 HOH HOH . MA 23 HOH C 9 509 507 HOH HOH . MA 23 HOH C 10 510 522 HOH HOH . NA 23 HOH D 1 601 601 HOH HOH . NA 23 HOH D 2 602 603 HOH HOH . NA 23 HOH D 3 603 602 HOH HOH . NA 23 HOH D 4 604 605 HOH HOH . OA 23 HOH E 1 301 305 HOH HOH . OA 23 HOH E 2 302 304 HOH HOH . OA 23 HOH E 3 303 306 HOH HOH . OA 23 HOH E 4 304 3 HOH HOH . PA 23 HOH F 1 601 605 HOH HOH . PA 23 HOH F 2 602 603 HOH HOH . PA 23 HOH F 3 603 602 HOH HOH . PA 23 HOH F 4 604 604 HOH HOH . PA 23 HOH F 5 605 607 HOH HOH . QA 23 HOH G 1 201 203 HOH HOH . QA 23 HOH G 2 202 205 HOH HOH . RA 23 HOH J 1 101 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . P 15 -40.194 -73.46 69.052 1 166.24 ? C1B LMT 403 C 1 HETATM 2 C C2B LMT . . . P 15 -40.29 -74.807 68.295 1 150.03 ? C2B LMT 403 C 1 HETATM 3 C C3B LMT . . . P 15 -41.699 -75.066 67.774 1 134.82 ? C3B LMT 403 C 1 HETATM 4 C C4B LMT . . . P 15 -42.638 -74.91 68.985 1 129.53 ? C4B LMT 403 C 1 HETATM 5 C C5B LMT . . . P 15 -42.679 -73.413 69.237 1 127.54 ? C5B LMT 403 C 1 HETATM 6 C C6B LMT . . . P 15 -43.823 -72.993 70.153 1 119.41 ? C6B LMT 403 C 1 HETATM 7 O O1B LMT . . . P 15 -39.723 -72.424 68.167 1 182.72 ? O1B LMT 403 C 1 HETATM 8 O O2B LMT . . . P 15 -39.362 -74.867 67.197 1 157.3 ? O2B LMT 403 C 1 HETATM 9 O O3B LMT . . . P 15 -41.759 -76.325 67.088 1 129.54 ? O3B LMT 403 C 1 HETATM 10 O O4' LMT . . . P 15 -43.983 -75.402 68.886 1 98.64 ? O4' LMT 403 C 1 HETATM 11 O O5B LMT . . . P 15 -41.399 -73.063 69.781 1 158.62 ? O5B LMT 403 C 1 HETATM 12 O O6B LMT . . . P 15 -45.029 -73.504 69.563 1 112.45 ? O6B LMT 403 C 1 HETATM 13 C C1' LMT . . . P 15 -39.012 -68.419 69.581 1 186.36 ? C1' LMT 403 C 1 HETATM 14 C C2' LMT . . . P 15 -38.059 -69.581 69.959 1 168.26 ? C2' LMT 403 C 1 HETATM 15 C C3' LMT . . . P 15 -38.081 -70.634 68.835 1 165.94 ? C3' LMT 403 C 1 HETATM 16 C C4' LMT . . . P 15 -39.51 -71.166 68.819 1 181.86 ? C4' LMT 403 C 1 HETATM 17 C C5' LMT . . . P 15 -40.3 -70.033 68.173 1 200.03 ? C5' LMT 403 C 1 HETATM 18 C C6' LMT . . . P 15 -41.717 -70.449 67.729 1 187.43 ? C6' LMT 403 C 1 HETATM 19 O O1' LMT . . . P 15 -39.193 -67.506 70.696 1 159.96 ? O1' LMT 403 C 1 HETATM 20 O O2' LMT . . . P 15 -36.739 -69.093 70.24 1 155.29 ? O2' LMT 403 C 1 HETATM 21 O O3' LMT . . . P 15 -37.112 -71.677 68.946 1 168.26 ? O3' LMT 403 C 1 HETATM 22 O O5' LMT . . . P 15 -40.293 -68.916 69.092 1 224.19 ? O5' LMT 403 C 1 HETATM 23 O O6' LMT . . . P 15 -42.622 -70.523 68.836 1 148.69 ? O6' LMT 403 C 1 HETATM 24 C C1 LMT . . . P 15 -38.761 -66.156 70.491 1 130.98 ? C1 LMT 403 C 1 HETATM 25 C C2 LMT . . . P 15 -37.546 -65.908 71.379 1 130 ? C2 LMT 403 C 1 HETATM 26 C C3 LMT . . . P 15 -36.886 -64.549 71.14 1 127.92 ? C3 LMT 403 C 1 HETATM 27 C C4 LMT . . . P 15 -36.385 -64.248 69.714 1 119.8 ? C4 LMT 403 C 1 HETATM 28 C C5 LMT . . . P 15 -36.957 -62.954 69.098 1 122.55 ? C5 LMT 403 C 1 HETATM 29 C C6 LMT . . . P 15 -38.108 -62.234 69.88 1 131.87 ? C6 LMT 403 C 1 HETATM 30 C C7 LMT . . . P 15 -37.79 -61.026 70.806 1 125.77 ? C7 LMT 403 C 1 HETATM 31 C C8 LMT . . . P 15 -37.656 -59.642 70.125 1 125.96 ? C8 LMT 403 C 1 HETATM 32 C C9 LMT . . . P 15 -36.518 -58.708 70.609 1 123.2 ? C9 LMT 403 C 1 HETATM 33 C C10 LMT . . . P 15 -35.297 -58.61 69.663 1 118.95 ? C10 LMT 403 C 1 HETATM 34 C C11 LMT . . . P 15 -34.892 -57.229 69.108 1 101.44 ? C11 LMT 403 C 1 HETATM 35 C C12 LMT . . . P 15 -33.842 -57.336 67.999 1 77.78 ? C12 LMT 403 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #