data_7R3V # _model_server_result.job_id ZsMOfZY4IJotodMDO2GyZg _model_server_result.datetime_utc '2024-11-27 18:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":406}' # _entry.id 7R3V # _exptl.entry_id 7R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 744.034 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R3V _cell.length_a 209.589 _cell.length_b 209.589 _cell.length_c 342.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 S N N ? 16 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 863 n n C5 C4 PEE sing 864 n n C4 O4P PEE sing 865 n n O4P P PEE sing 866 n n O1P P PEE doub 867 n n C1 O3P PEE sing 868 n n C1 C2 PEE sing 869 n n O3P P PEE sing 870 n n P O2P PEE sing 871 n n C2 C3 PEE sing 872 n n C2 O2 PEE sing 873 n n C3 O3 PEE sing 874 n n O2 C10 PEE sing 875 n n C31 C30 PEE sing 876 n n C31 C32 PEE sing 877 n n C33 C32 PEE sing 878 n n C33 C34 PEE sing 879 n n C30 O3 PEE sing 880 n n C30 O5 PEE doub 881 n n C10 O4 PEE doub 882 n n C10 C11 PEE sing 883 n n C34 C35 PEE sing 884 n n C11 C12 PEE sing 885 n n C35 C36 PEE sing 886 n n C36 C37 PEE sing 887 n n C37 C38 PEE sing 888 n n C38 C39 PEE doub 889 z n C12 C13 PEE sing 890 n n C39 C40 PEE sing 891 n n C13 C14 PEE sing 892 n n C14 C15 PEE sing 893 n n C40 C41 PEE sing 894 n n C15 C16 PEE sing 895 n n C41 C42 PEE sing 896 n n C16 C17 PEE sing 897 n n C42 C43 PEE sing 898 n n C17 C18 PEE sing 899 n n C43 C44 PEE sing 900 n n C18 C19 PEE doub 901 z n C46 C47 PEE sing 902 n n C46 C45 PEE sing 903 n n C44 C45 PEE sing 904 n n C19 C20 PEE sing 905 n n C20 C21 PEE sing 906 n n C21 C22 PEE sing 907 n n C22 C23 PEE sing 908 n n C23 C24 PEE sing 909 n n C24 C25 PEE sing 910 n n C26 C25 PEE sing 911 n n C26 C27 PEE sing 912 n n C27 H7 PEE sing 913 n n C27 H8 PEE sing 914 n n C27 H82 PEE sing 915 n n C26 H5 PEE sing 916 n n C26 H6 PEE sing 917 n n C25 H12 PEE sing 918 n n C25 H4 PEE sing 919 n n C24 H10 PEE sing 920 n n C24 H11 PEE sing 921 n n C23 H83 PEE sing 922 n n C23 H9 PEE sing 923 n n C22 H2 PEE sing 924 n n C22 H3 PEE sing 925 n n C21 H14 PEE sing 926 n n C21 H1 PEE sing 927 n n C20 H16 PEE sing 928 n n C20 H13 PEE sing 929 n n C19 H18 PEE sing 930 n n C18 H20 PEE sing 931 n n C17 H22 PEE sing 932 n n C17 H19 PEE sing 933 n n C16 H21 PEE sing 934 n n C16 H28 PEE sing 935 n n C15 H23 PEE sing 936 n n C15 H24 PEE sing 937 n n C14 H25 PEE sing 938 n n C14 H26 PEE sing 939 n n C13 H17 PEE sing 940 n n C13 H27 PEE sing 941 n n C12 H15 PEE sing 942 n n C12 H29 PEE sing 943 n n C11 H30 PEE sing 944 n n C11 H31 PEE sing 945 n n C2 H32 PEE sing 946 n n C1 H33 PEE sing 947 n n C1 H34 PEE sing 948 n n O2P H35 PEE sing 949 n n C4 H36 PEE sing 950 n n C4 H37 PEE sing 951 n n C5 H38 PEE sing 952 n n C5 H39 PEE sing 953 n n N H40 PEE sing 954 n n N H41 PEE sing 955 n n C3 H43 PEE sing 956 n n C3 H44 PEE sing 957 n n C31 H45 PEE sing 958 n n C31 H46 PEE sing 959 n n C32 H47 PEE sing 960 n n C32 H48 PEE sing 961 n n C33 H49 PEE sing 962 n n C33 H50 PEE sing 963 n n C34 H51 PEE sing 964 n n C34 H52 PEE sing 965 n n C35 H53 PEE sing 966 n n C35 H54 PEE sing 967 n n C36 H55 PEE sing 968 n n C36 H56 PEE sing 969 n n C37 H57 PEE sing 970 n n C37 H58 PEE sing 971 n n C38 H59 PEE sing 972 n n C39 H60 PEE sing 973 n n C40 H81 PEE sing 974 n n C40 H61 PEE sing 975 n n C41 H80 PEE sing 976 n n C41 H62 PEE sing 977 n n C42 H63 PEE sing 978 n n C42 H64 PEE sing 979 n n C43 H65 PEE sing 980 n n C43 H66 PEE sing 981 n n C44 H67 PEE sing 982 n n C44 H68 PEE sing 983 n n C45 H69 PEE sing 984 n n C45 H70 PEE sing 985 n n C46 H71 PEE sing 986 n n C46 H72 PEE sing 987 n n C47 H73 PEE sing 988 n n C47 H74 PEE sing 989 n n C47 H75 PEE sing 990 n n # _atom_sites.entry_id 7R3V _atom_sites.fract_transf_matrix[1][1] 0.004771 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 16 PEE C 1 406 409 PEE PEE . T 17 I2Q C 1 407 528 I2Q C67 . U 18 DMS C 1 408 529 DMS DMS . V 19 PO4 C 1 409 2 PO4 PO4 . W 19 PO4 C 1 410 3 PO4 PO4 . X 20 HEC D 1 501 501 HEC HEC . Y 19 PO4 D 1 502 502 PO4 PO4 . Z 13 CDL D 1 503 503 CDL CDL . AA 21 FES E 1 201 197 FES FES . BA 22 PX4 E 1 202 202 PX4 PX4 . CA 19 PO4 E 1 203 203 PO4 PO4 . DA 16 PEE E 1 204 204 PEE PEE . EA 19 PO4 F 1 501 501 PO4 PO4 . FA 19 PO4 F 1 502 1 PO4 PO4 . GA 13 CDL G 1 101 408 CDL CDL . HA 19 PO4 G 1 102 101 PO4 PO4 . IA 19 PO4 G 1 103 102 PO4 PO4 . JA 19 PO4 G 1 104 103 PO4 PO4 . KA 23 HOH A 1 601 4 HOH HOH . KA 23 HOH A 2 602 604 HOH HOH . KA 23 HOH A 3 603 603 HOH HOH . KA 23 HOH A 4 604 606 HOH HOH . KA 23 HOH A 5 605 605 HOH HOH . KA 23 HOH A 6 606 609 HOH HOH . KA 23 HOH A 7 607 1 HOH HOH . KA 23 HOH A 8 608 608 HOH HOH . KA 23 HOH A 9 609 509 HOH HOH . KA 23 HOH A 10 610 607 HOH HOH . LA 23 HOH B 1 501 504 HOH HOH . LA 23 HOH B 2 502 502 HOH HOH . LA 23 HOH B 3 503 508 HOH HOH . LA 23 HOH B 4 504 503 HOH HOH . LA 23 HOH B 5 505 506 HOH HOH . LA 23 HOH B 6 506 501 HOH HOH . LA 23 HOH B 7 507 505 HOH HOH . LA 23 HOH B 8 508 507 HOH HOH . LA 23 HOH B 9 509 511 HOH HOH . MA 23 HOH C 1 501 2 HOH HOH . MA 23 HOH C 2 502 505 HOH HOH . MA 23 HOH C 3 503 501 HOH HOH . MA 23 HOH C 4 504 504 HOH HOH . MA 23 HOH C 5 505 502 HOH HOH . MA 23 HOH C 6 506 508 HOH HOH . MA 23 HOH C 7 507 511 HOH HOH . MA 23 HOH C 8 508 514 HOH HOH . MA 23 HOH C 9 509 507 HOH HOH . MA 23 HOH C 10 510 522 HOH HOH . NA 23 HOH D 1 601 601 HOH HOH . NA 23 HOH D 2 602 603 HOH HOH . NA 23 HOH D 3 603 602 HOH HOH . NA 23 HOH D 4 604 605 HOH HOH . OA 23 HOH E 1 301 305 HOH HOH . OA 23 HOH E 2 302 304 HOH HOH . OA 23 HOH E 3 303 306 HOH HOH . OA 23 HOH E 4 304 3 HOH HOH . PA 23 HOH F 1 601 605 HOH HOH . PA 23 HOH F 2 602 603 HOH HOH . PA 23 HOH F 3 603 602 HOH HOH . PA 23 HOH F 4 604 604 HOH HOH . PA 23 HOH F 5 605 607 HOH HOH . QA 23 HOH G 1 201 203 HOH HOH . QA 23 HOH G 2 202 205 HOH HOH . RA 23 HOH J 1 101 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 PEE . . . S 16 -58.317 -67.578 49.942 1 66.96 ? C25 PEE 406 C 1 HETATM 2 C C24 PEE . . . S 16 -58.717 -66.312 49.092 1 86 ? C24 PEE 406 C 1 HETATM 3 C C23 PEE . . . S 16 -58.132 -64.868 49.339 1 74.92 ? C23 PEE 406 C 1 HETATM 4 C C22 PEE . . . S 16 -57.346 -64.286 48.124 1 72.25 ? C22 PEE 406 C 1 HETATM 5 C C21 PEE . . . S 16 -57.189 -62.792 47.938 1 61.19 ? C21 PEE 406 C 1 HETATM 6 C C20 PEE . . . S 16 -56.219 -62.507 46.777 1 64.93 ? C20 PEE 406 C 1 HETATM 7 C C19 PEE . . . S 16 -55.754 -61.06 46.629 1 79.37 ? C19 PEE 406 C 1 HETATM 8 C C18 PEE . . . S 16 -55.582 -60.539 45.19 1 69.91 ? C18 PEE 406 C 1 HETATM 9 C C17 PEE . . . S 16 -56.764 -59.743 44.647 1 76.27 ? C17 PEE 406 C 1 HETATM 10 C C16 PEE . . . S 16 -57.225 -58.522 45.447 1 72.86 ? C16 PEE 406 C 1 HETATM 11 C C15 PEE . . . S 16 -58.746 -58.369 45.586 1 63.43 ? C15 PEE 406 C 1 HETATM 12 C C14 PEE . . . S 16 -59.358 -57.239 44.801 1 57.47 ? C14 PEE 406 C 1 HETATM 13 C C13 PEE . . . S 16 -59.883 -56.079 45.63 1 56.7 ? C13 PEE 406 C 1 HETATM 14 C C12 PEE . . . S 16 -60.657 -55.038 44.822 1 67.3 ? C12 PEE 406 C 1 HETATM 15 C C11 PEE . . . S 16 -59.889 -53.782 44.496 1 56.1 ? C11 PEE 406 C 1 HETATM 16 C C10 PEE . . . S 16 -60.09 -52.705 45.526 1 79.44 ? C10 PEE 406 C 1 HETATM 17 O O4 PEE . . . S 16 -60.458 -52.861 46.676 1 92.48 ? O4 PEE 406 C 1 HETATM 18 O O2 PEE . . . S 16 -59.795 -51.487 45.049 1 81.42 ? O2 PEE 406 C 1 HETATM 19 C C2 PEE . . . S 16 -59.553 -50.424 46.02 1 76.19 ? C2 PEE 406 C 1 HETATM 20 C C1 PEE . . . S 16 -60.758 -49.503 45.989 1 71.35 ? C1 PEE 406 C 1 HETATM 21 O O3P PEE . . . S 16 -61.951 -50.203 45.508 1 64.66 ? O3P PEE 406 C 1 HETATM 22 P P PEE . . . S 16 -63.439 -49.607 45.696 1 69.41 ? P PEE 406 C 1 HETATM 23 O O2P PEE . . . S 16 -63.728 -49.113 47.102 1 69.57 ? O2P PEE 406 C 1 HETATM 24 O O1P PEE . . . S 16 -64.348 -50.657 45.108 1 64.82 ? O1P PEE 406 C 1 HETATM 25 O O4P PEE . . . S 16 -63.394 -48.37 44.656 1 74.27 ? O4P PEE 406 C 1 HETATM 26 C C4 PEE . . . S 16 -63.912 -47.055 45.063 1 89.72 ? C4 PEE 406 C 1 HETATM 27 C C5 PEE . . . S 16 -63.866 -46.042 43.946 1 77.8 ? C5 PEE 406 C 1 HETATM 28 N N PEE . . . S 16 -62.516 -45.984 43.35 1 75.41 ? N PEE 406 C 1 HETATM 29 C C3 PEE . . . S 16 -58.243 -49.749 45.664 1 77.71 ? C3 PEE 406 C 1 HETATM 30 O O3 PEE . . . S 16 -57.132 -50.636 45.946 1 88.37 ? O3 PEE 406 C 1 HETATM 31 C C30 PEE . . . S 16 -56.628 -51.399 44.955 1 88.96 ? C30 PEE 406 C 1 HETATM 32 O O5 PEE . . . S 16 -57.081 -52.448 44.606 1 97.36 ? O5 PEE 406 C 1 HETATM 33 C C31 PEE . . . S 16 -55.32 -50.929 44.387 1 92 ? C31 PEE 406 C 1 HETATM 34 C C32 PEE . . . S 16 -54.225 -51.951 44.617 1 74.8 ? C32 PEE 406 C 1 HETATM 35 C C33 PEE . . . S 16 -54.284 -53.153 43.694 1 62.09 ? C33 PEE 406 C 1 HETATM 36 C C34 PEE . . . S 16 -54.198 -54.453 44.437 1 65.31 ? C34 PEE 406 C 1 HETATM 37 C C35 PEE . . . S 16 -52.955 -55.34 44.138 1 74.87 ? C35 PEE 406 C 1 HETATM 38 C C36 PEE . . . S 16 -52.879 -56.609 45.019 1 80.93 ? C36 PEE 406 C 1 HETATM 39 C C37 PEE . . . S 16 -51.553 -57.379 45.064 1 77.01 ? C37 PEE 406 C 1 HETATM 40 C C38 PEE . . . S 16 -51.586 -58.686 45.88 1 63.14 ? C38 PEE 406 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #