data_7R3V # _model_server_result.job_id sCHcmOQmdZtrOV25B8ctfQ _model_server_result.datetime_utc '2024-11-05 08:02:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":408}' # _entry.id 7R3V # _exptl.entry_id 7R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R3V _cell.length_a 209.589 _cell.length_b 209.589 _cell.length_c 342.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 397 n n S C1 DMS sing 398 n n S C2 DMS sing 399 n n C1 H11 DMS sing 400 n n C1 H12 DMS sing 401 n n C1 H13 DMS sing 402 n n C2 H21 DMS sing 403 n n C2 H22 DMS sing 404 n n C2 H23 DMS sing 405 n n # _atom_sites.entry_id 7R3V _atom_sites.fract_transf_matrix[1][1] 0.004771 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 16 PEE C 1 406 409 PEE PEE . T 17 I2Q C 1 407 528 I2Q C67 . U 18 DMS C 1 408 529 DMS DMS . V 19 PO4 C 1 409 2 PO4 PO4 . W 19 PO4 C 1 410 3 PO4 PO4 . X 20 HEC D 1 501 501 HEC HEC . Y 19 PO4 D 1 502 502 PO4 PO4 . Z 13 CDL D 1 503 503 CDL CDL . AA 21 FES E 1 201 197 FES FES . BA 22 PX4 E 1 202 202 PX4 PX4 . CA 19 PO4 E 1 203 203 PO4 PO4 . DA 16 PEE E 1 204 204 PEE PEE . EA 19 PO4 F 1 501 501 PO4 PO4 . FA 19 PO4 F 1 502 1 PO4 PO4 . GA 13 CDL G 1 101 408 CDL CDL . HA 19 PO4 G 1 102 101 PO4 PO4 . IA 19 PO4 G 1 103 102 PO4 PO4 . JA 19 PO4 G 1 104 103 PO4 PO4 . KA 23 HOH A 1 601 4 HOH HOH . KA 23 HOH A 2 602 604 HOH HOH . KA 23 HOH A 3 603 603 HOH HOH . KA 23 HOH A 4 604 606 HOH HOH . KA 23 HOH A 5 605 605 HOH HOH . KA 23 HOH A 6 606 609 HOH HOH . KA 23 HOH A 7 607 1 HOH HOH . KA 23 HOH A 8 608 608 HOH HOH . KA 23 HOH A 9 609 509 HOH HOH . KA 23 HOH A 10 610 607 HOH HOH . LA 23 HOH B 1 501 504 HOH HOH . LA 23 HOH B 2 502 502 HOH HOH . LA 23 HOH B 3 503 508 HOH HOH . LA 23 HOH B 4 504 503 HOH HOH . LA 23 HOH B 5 505 506 HOH HOH . LA 23 HOH B 6 506 501 HOH HOH . LA 23 HOH B 7 507 505 HOH HOH . LA 23 HOH B 8 508 507 HOH HOH . LA 23 HOH B 9 509 511 HOH HOH . MA 23 HOH C 1 501 2 HOH HOH . MA 23 HOH C 2 502 505 HOH HOH . MA 23 HOH C 3 503 501 HOH HOH . MA 23 HOH C 4 504 504 HOH HOH . MA 23 HOH C 5 505 502 HOH HOH . MA 23 HOH C 6 506 508 HOH HOH . MA 23 HOH C 7 507 511 HOH HOH . MA 23 HOH C 8 508 514 HOH HOH . MA 23 HOH C 9 509 507 HOH HOH . MA 23 HOH C 10 510 522 HOH HOH . NA 23 HOH D 1 601 601 HOH HOH . NA 23 HOH D 2 602 603 HOH HOH . NA 23 HOH D 3 603 602 HOH HOH . NA 23 HOH D 4 604 605 HOH HOH . OA 23 HOH E 1 301 305 HOH HOH . OA 23 HOH E 2 302 304 HOH HOH . OA 23 HOH E 3 303 306 HOH HOH . OA 23 HOH E 4 304 3 HOH HOH . PA 23 HOH F 1 601 605 HOH HOH . PA 23 HOH F 2 602 603 HOH HOH . PA 23 HOH F 3 603 602 HOH HOH . PA 23 HOH F 4 604 604 HOH HOH . PA 23 HOH F 5 605 607 HOH HOH . QA 23 HOH G 1 201 203 HOH HOH . QA 23 HOH G 2 202 205 HOH HOH . RA 23 HOH J 1 101 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . U 18 -66.571 -70.976 30.22 1 167.58 ? S DMS 408 C 1 HETATM 2 O O DMS . . . U 18 -65.278 -71.75 30.145 1 144.39 ? O DMS 408 C 1 HETATM 3 C C1 DMS . . . U 18 -66.304 -69.604 31.332 1 129.31 ? C1 DMS 408 C 1 HETATM 4 C C2 DMS . . . U 18 -67.717 -71.952 31.176 1 139.43 ? C2 DMS 408 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #