data_7R3V # _model_server_result.job_id -zEi1KCS49pbP9cUXCWYXw _model_server_result.datetime_utc '2024-11-27 18:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":501}' # _entry.id 7R3V # _exptl.entry_id 7R3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R3V _cell.length_a 209.589 _cell.length_b 209.589 _cell.length_c 342.429 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 20 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 H SG CYS 12 H CYS 24 1_555 H SG CYS 56 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 H SG CYS 28 H CYS 40 1_555 H SG CYS 42 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 D NE2 HIS 40 D HIS 41 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc6 D SD MET 159 D MET 160 1_555 X FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 AA FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 AA FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 456 n n FE NB HEC sing 457 n n FE NC HEC sing 458 n n FE ND HEC sing 459 n n CHA C1A HEC doub 460 n n CHA C4D HEC sing 461 n n CHA HHA HEC sing 462 n n CHB C4A HEC doub 463 n n CHB C1B HEC sing 464 n n CHB HHB HEC sing 465 n n CHC C4B HEC doub 466 n n CHC C1C HEC sing 467 n n CHC HHC HEC sing 468 n n CHD C4C HEC doub 469 n n CHD C1D HEC sing 470 n n CHD HHD HEC sing 471 n n NA C1A HEC sing 472 n y NA C4A HEC sing 473 n y C1A C2A HEC sing 474 n y C2A C3A HEC doub 475 n y C2A CAA HEC sing 476 n n C3A C4A HEC sing 477 n y C3A CMA HEC sing 478 n n CMA HMA1 HEC sing 479 n n CMA HMA2 HEC sing 480 n n CMA HMA3 HEC sing 481 n n CAA CBA HEC sing 482 n n CAA HAA1 HEC sing 483 n n CAA HAA2 HEC sing 484 n n CBA CGA HEC sing 485 n n CBA HBA1 HEC sing 486 n n CBA HBA2 HEC sing 487 n n CGA O1A HEC doub 488 n n CGA O2A HEC sing 489 n n O2A H2A HEC sing 490 n n NB C1B HEC sing 491 n y NB C4B HEC sing 492 n y C1B C2B HEC doub 493 n y C2B C3B HEC sing 494 n y C2B CMB HEC sing 495 n n C3B C4B HEC sing 496 n y C3B CAB HEC doub 497 e n CMB HMB1 HEC sing 498 n n CMB HMB2 HEC sing 499 n n CMB HMB3 HEC sing 500 n n CAB CBB HEC sing 501 n n CAB HAB HEC sing 502 n n CBB HBB1 HEC sing 503 n n CBB HBB2 HEC sing 504 n n CBB HBB3 HEC sing 505 n n NC C1C HEC sing 506 n y NC C4C HEC sing 507 n y C1C C2C HEC doub 508 n y C2C C3C HEC sing 509 n y C2C CMC HEC sing 510 n n C3C C4C HEC sing 511 n y C3C CAC HEC doub 512 e n CMC HMC1 HEC sing 513 n n CMC HMC2 HEC sing 514 n n CMC HMC3 HEC sing 515 n n CAC CBC HEC sing 516 n n CAC HAC HEC sing 517 n n CBC HBC1 HEC sing 518 n n CBC HBC2 HEC sing 519 n n CBC HBC3 HEC sing 520 n n ND C1D HEC sing 521 n y ND C4D HEC sing 522 n y C1D C2D HEC doub 523 n y C2D C3D HEC sing 524 n y C2D CMD HEC sing 525 n n C3D C4D HEC doub 526 n y C3D CAD HEC sing 527 n n CMD HMD1 HEC sing 528 n n CMD HMD2 HEC sing 529 n n CMD HMD3 HEC sing 530 n n CAD CBD HEC sing 531 n n CAD HAD1 HEC sing 532 n n CAD HAD2 HEC sing 533 n n CBD CGD HEC sing 534 n n CBD HBD1 HEC sing 535 n n CBD HBD2 HEC sing 536 n n CGD O1D HEC doub 537 n n CGD O2D HEC sing 538 n n O2D H2D HEC sing 539 n n # _atom_sites.entry_id 7R3V _atom_sites.fract_transf_matrix[1][1] 0.004771 _atom_sites.fract_transf_matrix[1][2] 0.002755 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 501 PG4 PG4 . L 12 6PE A 1 502 502 6PE 6PE . M 13 CDL A 1 503 401 CDL CDL . N 14 HEM C 1 401 402 HEM HEM . O 14 HEM C 1 402 403 HEM HEM . P 15 LMT C 1 403 405 LMT LMT . Q 11 PG4 C 1 404 406 PG4 PG4 . R 11 PG4 C 1 405 407 PG4 PG4 . S 16 PEE C 1 406 409 PEE PEE . T 17 I2Q C 1 407 528 I2Q C67 . U 18 DMS C 1 408 529 DMS DMS . V 19 PO4 C 1 409 2 PO4 PO4 . W 19 PO4 C 1 410 3 PO4 PO4 . X 20 HEC D 1 501 501 HEC HEC . Y 19 PO4 D 1 502 502 PO4 PO4 . Z 13 CDL D 1 503 503 CDL CDL . AA 21 FES E 1 201 197 FES FES . BA 22 PX4 E 1 202 202 PX4 PX4 . CA 19 PO4 E 1 203 203 PO4 PO4 . DA 16 PEE E 1 204 204 PEE PEE . EA 19 PO4 F 1 501 501 PO4 PO4 . FA 19 PO4 F 1 502 1 PO4 PO4 . GA 13 CDL G 1 101 408 CDL CDL . HA 19 PO4 G 1 102 101 PO4 PO4 . IA 19 PO4 G 1 103 102 PO4 PO4 . JA 19 PO4 G 1 104 103 PO4 PO4 . KA 23 HOH A 1 601 4 HOH HOH . KA 23 HOH A 2 602 604 HOH HOH . KA 23 HOH A 3 603 603 HOH HOH . KA 23 HOH A 4 604 606 HOH HOH . KA 23 HOH A 5 605 605 HOH HOH . KA 23 HOH A 6 606 609 HOH HOH . KA 23 HOH A 7 607 1 HOH HOH . KA 23 HOH A 8 608 608 HOH HOH . KA 23 HOH A 9 609 509 HOH HOH . KA 23 HOH A 10 610 607 HOH HOH . LA 23 HOH B 1 501 504 HOH HOH . LA 23 HOH B 2 502 502 HOH HOH . LA 23 HOH B 3 503 508 HOH HOH . LA 23 HOH B 4 504 503 HOH HOH . LA 23 HOH B 5 505 506 HOH HOH . LA 23 HOH B 6 506 501 HOH HOH . LA 23 HOH B 7 507 505 HOH HOH . LA 23 HOH B 8 508 507 HOH HOH . LA 23 HOH B 9 509 511 HOH HOH . MA 23 HOH C 1 501 2 HOH HOH . MA 23 HOH C 2 502 505 HOH HOH . MA 23 HOH C 3 503 501 HOH HOH . MA 23 HOH C 4 504 504 HOH HOH . MA 23 HOH C 5 505 502 HOH HOH . MA 23 HOH C 6 506 508 HOH HOH . MA 23 HOH C 7 507 511 HOH HOH . MA 23 HOH C 8 508 514 HOH HOH . MA 23 HOH C 9 509 507 HOH HOH . MA 23 HOH C 10 510 522 HOH HOH . NA 23 HOH D 1 601 601 HOH HOH . NA 23 HOH D 2 602 603 HOH HOH . NA 23 HOH D 3 603 602 HOH HOH . NA 23 HOH D 4 604 605 HOH HOH . OA 23 HOH E 1 301 305 HOH HOH . OA 23 HOH E 2 302 304 HOH HOH . OA 23 HOH E 3 303 306 HOH HOH . OA 23 HOH E 4 304 3 HOH HOH . PA 23 HOH F 1 601 605 HOH HOH . PA 23 HOH F 2 602 603 HOH HOH . PA 23 HOH F 3 603 602 HOH HOH . PA 23 HOH F 4 604 604 HOH HOH . PA 23 HOH F 5 605 607 HOH HOH . QA 23 HOH G 1 201 203 HOH HOH . QA 23 HOH G 2 202 205 HOH HOH . RA 23 HOH J 1 101 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . X 20 -17.662 -82.458 38.375 1 90.73 ? FE HEC 501 D 1 HETATM 2 C CHA HEC . . . X 20 -20.014 -82.579 40.893 1 93.09 ? CHA HEC 501 D 1 HETATM 3 C CHB HEC . . . X 20 -19.231 -79.691 37.049 1 81.18 ? CHB HEC 501 D 1 HETATM 4 C CHC HEC . . . X 20 -15.145 -82.193 36.079 1 100.33 ? CHC HEC 501 D 1 HETATM 5 C CHD HEC . . . X 20 -16.304 -85.456 39.54 1 94.29 ? CHD HEC 501 D 1 HETATM 6 N NA HEC . . . X 20 -19.366 -81.361 38.886 1 86.12 ? NA HEC 501 D 1 HETATM 7 C C1A HEC . . . X 20 -20.201 -81.504 39.925 1 83.83 ? C1A HEC 501 D 1 HETATM 8 C C2A HEC . . . X 20 -21.303 -80.503 40.065 1 82.41 ? C2A HEC 501 D 1 HETATM 9 C C3A HEC . . . X 20 -21.032 -79.652 38.894 1 94.15 ? C3A HEC 501 D 1 HETATM 10 C C4A HEC . . . X 20 -19.824 -80.262 38.274 1 92.18 ? C4A HEC 501 D 1 HETATM 11 C CMA HEC . . . X 20 -21.771 -78.433 38.388 1 113.67 ? CMA HEC 501 D 1 HETATM 12 C CAA HEC . . . X 20 -22.429 -80.391 41.078 1 72.23 ? CAA HEC 501 D 1 HETATM 13 C CBA HEC . . . X 20 -22.27 -79.187 42 1 80.96 ? CBA HEC 501 D 1 HETATM 14 C CGA HEC . . . X 20 -23.43 -79.192 42.998 1 94.99 ? CGA HEC 501 D 1 HETATM 15 O O1A HEC . . . X 20 -23.822 -80.26 43.505 1 91.61 ? O1A HEC 501 D 1 HETATM 16 O O2A HEC . . . X 20 -24.01 -78.124 43.32 1 106.81 ? O2A HEC 501 D 1 HETATM 17 N NB HEC . . . X 20 -17.259 -81.162 36.825 1 78.63 ? NB HEC 501 D 1 HETATM 18 C C1B HEC . . . X 20 -17.977 -80.103 36.427 1 78.43 ? C1B HEC 501 D 1 HETATM 19 C C2B HEC . . . X 20 -17.434 -79.314 35.31 1 82.14 ? C2B HEC 501 D 1 HETATM 20 C C3B HEC . . . X 20 -16.207 -80.079 35.039 1 85.63 ? C3B HEC 501 D 1 HETATM 21 C C4B HEC . . . X 20 -16.213 -81.19 36.014 1 85.36 ? C4B HEC 501 D 1 HETATM 22 C CMB HEC . . . X 20 -18.005 -78.072 34.661 1 79.73 ? CMB HEC 501 D 1 HETATM 23 C CAB HEC . . . X 20 -15.171 -79.8 34.001 1 91.22 ? CAB HEC 501 D 1 HETATM 24 C CBB HEC . . . X 20 -15.282 -78.625 33.038 1 87.27 ? CBB HEC 501 D 1 HETATM 25 N NC HEC . . . X 20 -15.983 -83.647 37.881 1 102.67 ? NC HEC 501 D 1 HETATM 26 C C1C HEC . . . X 20 -15.076 -83.418 36.903 1 108.22 ? C1C HEC 501 D 1 HETATM 27 C C2C HEC . . . X 20 -13.991 -84.458 36.733 1 111.12 ? C2C HEC 501 D 1 HETATM 28 C C3C HEC . . . X 20 -14.356 -85.416 37.785 1 107.93 ? C3C HEC 501 D 1 HETATM 29 C C4C HEC . . . X 20 -15.568 -84.804 38.439 1 108.51 ? C4C HEC 501 D 1 HETATM 30 C CMC HEC . . . X 20 -12.817 -84.521 35.79 1 116.99 ? CMC HEC 501 D 1 HETATM 31 C CAC HEC . . . X 20 -13.684 -86.71 38.133 1 104.12 ? CAC HEC 501 D 1 HETATM 32 C CBC HEC . . . X 20 -12.45 -87.29 37.481 1 105.36 ? CBC HEC 501 D 1 HETATM 33 N ND HEC . . . X 20 -18.072 -83.791 39.941 1 84.78 ? ND HEC 501 D 1 HETATM 34 C C1D HEC . . . X 20 -17.436 -84.927 40.285 1 79.75 ? C1D HEC 501 D 1 HETATM 35 C C2D HEC . . . X 20 -17.978 -85.605 41.502 1 89.8 ? C2D HEC 501 D 1 HETATM 36 C C3D HEC . . . X 20 -19.105 -84.74 41.884 1 94.63 ? C3D HEC 501 D 1 HETATM 37 C C4D HEC . . . X 20 -19.045 -83.675 40.858 1 91.32 ? C4D HEC 501 D 1 HETATM 38 C CMD HEC . . . X 20 -17.555 -86.88 42.203 1 83.68 ? CMD HEC 501 D 1 HETATM 39 C CAD HEC . . . X 20 -20.06 -84.872 43.045 1 89.17 ? CAD HEC 501 D 1 HETATM 40 C CBD HEC . . . X 20 -19.631 -83.828 44.08 1 93.72 ? CBD HEC 501 D 1 HETATM 41 C CGD HEC . . . X 20 -20.374 -84.025 45.394 1 112.09 ? CGD HEC 501 D 1 HETATM 42 O O1D HEC . . . X 20 -19.824 -83.675 46.455 1 116.65 ? O1D HEC 501 D 1 HETATM 43 O O2D HEC . . . X 20 -21.514 -84.547 45.437 1 127.76 ? O2D HEC 501 D 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #