data_7R3X # _model_server_result.job_id dwsT5JrGTfZKr-3oSKea-w _model_server_result.datetime_utc '2024-12-16 16:59:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1302}' # _entry.id 7R3X # _exptl.entry_id 7R3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 7R3X _cell.length_a 221.505 _cell.length_b 70.685 _cell.length_c 111.639 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 677 A CYS 677 1_555 A SG CYS 763 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? covale ? covale1 B O3' DT 10 P DT 10 1_555 B P DOC 11 P DOC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A OD1 ASP 290 A ASP 290 1_555 F CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A OD2 ASP 290 A ASP 290 1_555 F CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc3 A OE2 GLU 292 A GLU 292 1_555 F CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A OD2 ASP 477 A ASP 477 1_555 F CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A OD1 ASP 640 A ASP 640 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 A OD2 ASP 640 A ASP 640 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc7 A O VAL 641 A VAL 641 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 A OD2 ASP 877 A ASP 877 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc9 D O3G DTP . A DTP 1301 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc10 D O2B DTP . A DTP 1301 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 D O2A DTP . A DTP 1301 1_555 E CA CA . A CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc12 F CA CA . A CA 1303 1_555 G O ACT . A ACT 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc13 F CA CA . A CA 1303 1_555 G OXT ACT . A ACT 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc14 F CA CA . A CA 1303 1_555 H O HOH . A HOH 1425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 F CA CA . A CA 1303 1_555 H O HOH . A HOH 1446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? hydrog WATSON-CRICK hydrog1 B N3 DT 1 P DT 1 1_555 C N1 DA 16 T DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 1 P DT 1 1_555 C N6 DA 16 T DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DA 2 P DA 2 1_555 C N3 DT 15 T DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N6 DA 2 P DA 2 1_555 C O4 DT 15 T DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DA 3 P DA 3 1_555 C N3 DT 14 T DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N6 DA 3 P DA 3 1_555 C O4 DT 14 T DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 4 P DC 4 1_555 C N1 DG 13 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 4 P DC 4 1_555 C O6 DG 13 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 4 P DC 4 1_555 C N2 DG 13 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 5 P DC 5 1_555 C N1 DG 12 T DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 5 P DC 5 1_555 C O6 DG 12 T DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 5 P DC 5 1_555 C N2 DG 12 T DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 6 P DG 6 1_555 C N3 DC 11 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 6 P DG 6 1_555 C O2 DC 11 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 6 P DG 6 1_555 C N4 DC 11 T DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 7 P DC 7 1_555 C N1 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 7 P DC 7 1_555 C O6 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 7 P DC 7 1_555 C N2 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DG 8 P DG 8 1_555 C N3 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 DG 8 P DG 8 1_555 C O2 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O6 DG 8 P DG 8 1_555 C N4 DC 9 T DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DT 9 P DT 9 1_555 C N1 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O4 DT 9 P DT 9 1_555 C N6 DA 8 T DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 DT 10 P DT 10 1_555 C N1 DA 7 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O4 DT 10 P DT 10 1_555 C N6 DA 7 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N3 DOC 11 P DOC 11 1_555 C N1 DG 6 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N4 DOC 11 P DOC 11 1_555 C O6 DG 6 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O2 DOC 11 P DOC 11 1_555 C N2 DG 6 T DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7R3X _atom_sites.fract_transf_matrix[1][1] 0.004515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000807 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DTP A 1 1301 1301 DTP DTP . E 5 CA A 1 1302 1302 CA CA . F 5 CA A 1 1303 1303 CA CA . G 6 ACT A 1 1304 1304 ACT ACT . H 7 HOH A 1 1401 3 HOH HOH . H 7 HOH A 2 1402 2 HOH HOH . H 7 HOH A 3 1403 106 HOH HOH . H 7 HOH A 4 1404 58 HOH HOH . H 7 HOH A 5 1405 97 HOH HOH . H 7 HOH A 6 1406 110 HOH HOH . H 7 HOH A 7 1407 78 HOH HOH . H 7 HOH A 8 1408 96 HOH HOH . H 7 HOH A 9 1409 6 HOH HOH . H 7 HOH A 10 1410 87 HOH HOH . H 7 HOH A 11 1411 77 HOH HOH . H 7 HOH A 12 1412 18 HOH HOH . H 7 HOH A 13 1413 90 HOH HOH . H 7 HOH A 14 1414 60 HOH HOH . H 7 HOH A 15 1415 19 HOH HOH . H 7 HOH A 16 1416 4 HOH HOH . H 7 HOH A 17 1417 10 HOH HOH . H 7 HOH A 18 1418 47 HOH HOH . H 7 HOH A 19 1419 49 HOH HOH . H 7 HOH A 20 1420 99 HOH HOH . H 7 HOH A 21 1421 107 HOH HOH . H 7 HOH A 22 1422 129 HOH HOH . H 7 HOH A 23 1423 14 HOH HOH . H 7 HOH A 24 1424 112 HOH HOH . H 7 HOH A 25 1425 93 HOH HOH . H 7 HOH A 26 1426 118 HOH HOH . H 7 HOH A 27 1427 85 HOH HOH . H 7 HOH A 28 1428 108 HOH HOH . H 7 HOH A 29 1429 92 HOH HOH . H 7 HOH A 30 1430 9 HOH HOH . H 7 HOH A 31 1431 15 HOH HOH . H 7 HOH A 32 1432 75 HOH HOH . H 7 HOH A 33 1433 81 HOH HOH . H 7 HOH A 34 1434 117 HOH HOH . H 7 HOH A 35 1435 26 HOH HOH . H 7 HOH A 36 1436 88 HOH HOH . H 7 HOH A 37 1437 119 HOH HOH . H 7 HOH A 38 1438 124 HOH HOH . H 7 HOH A 39 1439 25 HOH HOH . H 7 HOH A 40 1440 121 HOH HOH . H 7 HOH A 41 1441 94 HOH HOH . H 7 HOH A 42 1442 5 HOH HOH . H 7 HOH A 43 1443 91 HOH HOH . H 7 HOH A 44 1444 32 HOH HOH . H 7 HOH A 45 1445 74 HOH HOH . H 7 HOH A 46 1446 116 HOH HOH . H 7 HOH A 47 1447 86 HOH HOH . H 7 HOH A 48 1448 120 HOH HOH . H 7 HOH A 49 1449 13 HOH HOH . H 7 HOH A 50 1450 84 HOH HOH . H 7 HOH A 51 1451 11 HOH HOH . H 7 HOH A 52 1452 1 HOH HOH . H 7 HOH A 53 1453 105 HOH HOH . H 7 HOH A 54 1454 128 HOH HOH . H 7 HOH A 55 1455 68 HOH HOH . H 7 HOH A 56 1456 41 HOH HOH . H 7 HOH A 57 1457 123 HOH HOH . H 7 HOH A 58 1458 62 HOH HOH . H 7 HOH A 59 1459 82 HOH HOH . H 7 HOH A 60 1460 36 HOH HOH . H 7 HOH A 61 1461 48 HOH HOH . H 7 HOH A 62 1462 125 HOH HOH . H 7 HOH A 63 1463 111 HOH HOH . H 7 HOH A 64 1464 98 HOH HOH . H 7 HOH A 65 1465 52 HOH HOH . H 7 HOH A 66 1466 102 HOH HOH . H 7 HOH A 67 1467 122 HOH HOH . H 7 HOH A 68 1468 24 HOH HOH . H 7 HOH A 69 1469 127 HOH HOH . H 7 HOH A 70 1470 37 HOH HOH . H 7 HOH A 71 1471 103 HOH HOH . H 7 HOH A 72 1472 89 HOH HOH . H 7 HOH A 73 1473 69 HOH HOH . H 7 HOH A 74 1474 114 HOH HOH . H 7 HOH A 75 1475 29 HOH HOH . H 7 HOH A 76 1476 7 HOH HOH . H 7 HOH A 77 1477 43 HOH HOH . H 7 HOH A 78 1478 65 HOH HOH . H 7 HOH A 79 1479 104 HOH HOH . H 7 HOH A 80 1480 35 HOH HOH . H 7 HOH A 81 1481 115 HOH HOH . H 7 HOH A 82 1482 130 HOH HOH . H 7 HOH A 83 1483 109 HOH HOH . H 7 HOH A 84 1484 53 HOH HOH . H 7 HOH A 85 1485 113 HOH HOH . H 7 HOH A 86 1486 76 HOH HOH . H 7 HOH A 87 1487 55 HOH HOH . I 7 HOH P 1 101 21 HOH HOH . J 7 HOH T 1 101 126 HOH HOH . J 7 HOH T 2 102 73 HOH HOH . J 7 HOH T 3 103 71 HOH HOH . J 7 HOH T 4 104 101 HOH HOH . J 7 HOH T 5 105 100 HOH HOH . J 7 HOH T 6 106 8 HOH HOH . J 7 HOH T 7 107 33 HOH HOH . J 7 HOH T 8 108 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 15.087 _atom_site.Cartn_y -11.189 _atom_site.Cartn_z 31.127 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.4 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 86 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 1203 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 1 #