data_7R4E
#
_model_server_result.job_id            0ekxPxqt8orw98KMMKEJsg 
_model_server_result.datetime_utc      '2024-11-08 08:37:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7r4e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    7R4E 
#
_exptl.entry_id    7R4E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              371.41 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-methyl-3-nitro-~{N}-[(2~{E},4~{E})-5-[2-[(oxidanylamino)methyl]pyridin-1-yl]penta-2,4-dienyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7R4E 
_cell.length_a            78.956 
_cell.length_b            110.997 
_cell.length_c            227.549 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7R4E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
covale ? covale1 A C GLU 202 A GLU 202 1_555 A N RVX 203 A RVX 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C RVX 203 A RVX 203 1_555 A N ALA 204 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A ND2 ASN 350 A ASN 350 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale4 A ND2 ASN 464 A ASN 464 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale5 B C GLU 202 B GLU 202 1_555 B N RVX 203 B RVX 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 B C RVX 203 B RVX 203 1_555 B N ALA 204 B ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 B ND2 ASN 350 B ASN 350 1_555 L C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale8 B ND2 ASN 464 B ASN 464 1_555 M C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
#
_chem_comp.formula           'C19 H23 N4 O4 1' 
_chem_comp.formula_weight    371.41 
_chem_comp.id                I1X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-methyl-3-nitro-~{N}-[(2~{E},4~{E})-5-[2-[(oxidanylamino)methyl]pyridin-1-yl]penta-2,4-dienyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C22 C21 I1X sing 152 n n 
O25 N24 I1X doub 153 n n 
C21 C20 I1X doub 154 n y 
C21 C23 I1X sing 155 n y 
O26 N24 I1X sing 156 n n 
N24 C23 I1X sing 157 n n 
C20 C19 I1X sing 158 n y 
C23 C27 I1X doub 159 n y 
C19 C18 I1X doub 160 n y 
C27 C18 I1X sing 161 n y 
C18 C02 I1X sing 162 n n 
O17 N16 I1X sing 163 n n 
C15 C14 I1X sing 164 n n 
C15 N16 I1X doub 165 e n 
C13 C14 I1X doub 166 n y 
C13 C12 I1X sing 167 n y 
C14 N09 I1X sing 168 n y 
C12 C11 I1X doub 169 n y 
N09 C08 I1X sing 170 n n 
N09 C10 I1X doub 171 n y 
C08 C07 I1X sing 172 n n 
C11 C10 I1X sing 173 n y 
C02 N03 I1X sing 174 n n 
C02 O01 I1X doub 175 n n 
N03 C04 I1X sing 176 n n 
C07 C06 I1X sing 177 n n 
C06 C05 I1X sing 178 n n 
C05 C04 I1X sing 179 n n 
C10 H1 I1X sing 180 n n 
C13 H2 I1X sing 181 n n 
C15 H3 I1X sing 182 n n 
C20 H5 I1X sing 183 n n 
C22 H6 I1X sing 184 n n 
C22 H7 I1X sing 185 n n 
C22 H8 I1X sing 186 n n 
N03 H9 I1X sing 187 n n 
C04 H10 I1X sing 188 n n 
C04 H11 I1X sing 189 n n 
C05 H12 I1X sing 190 n n 
C06 H13 I1X sing 191 n n 
C07 H14 I1X sing 192 n n 
C08 H15 I1X sing 193 n n 
C11 H16 I1X sing 194 n n 
C12 H17 I1X sing 195 n n 
O17 H19 I1X sing 196 n n 
C19 H20 I1X sing 197 n n 
C27 H21 I1X sing 198 n n 
C05 H22 I1X sing 199 n n 
C06 H23 I1X sing 200 n n 
C07 H24 I1X sing 201 n n 
C08 H25 I1X sing 202 n n 
#
_atom_sites.entry_id                     7R4E 
_atom_sites.fract_transf_matrix[1][1]    0.012665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 I1X A 1 601 1 I1X A42 . 
D 3 NAG A 1 602 544 NAG NAG . 
E 3 NAG A 1 603 544 NAG NAG . 
F 4 PG0 A 1 604 1 PG0 P2G . 
G 4 PG0 A 1 605 5 PG0 P2G . 
H 5 TOE A 1 606 7 TOE P3G . 
I 5 TOE A 1 607 9 TOE P3G . 
J 6 P15 A 1 608 1 P15 P6G . 
K 2 I1X B 1 601 1 I1X A42 . 
L 3 NAG B 1 602 544 NAG NAG . 
M 3 NAG B 1 603 544 NAG NAG . 
N 4 PG0 B 1 604 2 PG0 P2G . 
O 4 PG0 B 1 605 6 PG0 P2G . 
P 4 PG0 B 1 606 7 PG0 P2G . 
Q 5 TOE B 1 607 8 TOE P3G . 
R 7 HOH A 1 701 12 HOH HOH . 
R 7 HOH A 2 702 609 HOH HOH . 
R 7 HOH A 3 703 897 HOH HOH . 
R 7 HOH A 4 704 901 HOH HOH . 
R 7 HOH A 5 705 74 HOH HOH . 
R 7 HOH A 6 706 753 HOH HOH . 
R 7 HOH A 7 707 141 HOH HOH . 
R 7 HOH A 8 708 569 HOH HOH . 
R 7 HOH A 9 709 691 HOH HOH . 
R 7 HOH A 10 710 822 HOH HOH . 
R 7 HOH A 11 711 257 HOH HOH . 
R 7 HOH A 12 712 132 HOH HOH . 
R 7 HOH A 13 713 392 HOH HOH . 
R 7 HOH A 14 714 894 HOH HOH . 
R 7 HOH A 15 715 19 HOH HOH . 
R 7 HOH A 16 716 457 HOH HOH . 
R 7 HOH A 17 717 61 HOH HOH . 
R 7 HOH A 18 718 48 HOH HOH . 
R 7 HOH A 19 719 145 HOH HOH . 
R 7 HOH A 20 720 684 HOH HOH . 
R 7 HOH A 21 721 857 HOH HOH . 
R 7 HOH A 22 722 5 HOH HOH . 
R 7 HOH A 23 723 10 HOH HOH . 
R 7 HOH A 24 724 15 HOH HOH . 
R 7 HOH A 25 725 71 HOH HOH . 
R 7 HOH A 26 726 55 HOH HOH . 
R 7 HOH A 27 727 151 HOH HOH . 
R 7 HOH A 28 728 8 HOH HOH . 
R 7 HOH A 29 729 81 HOH HOH . 
R 7 HOH A 30 730 1 HOH HOH . 
R 7 HOH A 31 731 336 HOH HOH . 
R 7 HOH A 32 732 40 HOH HOH . 
R 7 HOH A 33 733 890 HOH HOH . 
R 7 HOH A 34 734 514 HOH HOH . 
R 7 HOH A 35 735 574 HOH HOH . 
R 7 HOH A 36 736 175 HOH HOH . 
R 7 HOH A 37 737 36 HOH HOH . 
R 7 HOH A 38 738 192 HOH HOH . 
R 7 HOH A 39 739 829 HOH HOH . 
R 7 HOH A 40 740 324 HOH HOH . 
R 7 HOH A 41 741 125 HOH HOH . 
R 7 HOH A 42 742 346 HOH HOH . 
R 7 HOH A 43 743 570 HOH HOH . 
R 7 HOH A 44 744 543 HOH HOH . 
R 7 HOH A 45 745 340 HOH HOH . 
R 7 HOH A 46 746 764 HOH HOH . 
R 7 HOH A 47 747 599 HOH HOH . 
R 7 HOH A 48 748 136 HOH HOH . 
R 7 HOH A 49 749 863 HOH HOH . 
R 7 HOH A 50 750 139 HOH HOH . 
R 7 HOH A 51 751 620 HOH HOH . 
R 7 HOH A 52 752 813 HOH HOH . 
R 7 HOH A 53 753 474 HOH HOH . 
R 7 HOH A 54 754 312 HOH HOH . 
R 7 HOH A 55 755 493 HOH HOH . 
R 7 HOH A 56 756 731 HOH HOH . 
R 7 HOH A 57 757 304 HOH HOH . 
R 7 HOH A 58 758 835 HOH HOH . 
R 7 HOH A 59 759 409 HOH HOH . 
R 7 HOH A 60 760 466 HOH HOH . 
R 7 HOH A 61 761 464 HOH HOH . 
R 7 HOH A 62 762 866 HOH HOH . 
R 7 HOH A 63 763 794 HOH HOH . 
R 7 HOH A 64 764 895 HOH HOH . 
R 7 HOH A 65 765 862 HOH HOH . 
R 7 HOH A 66 766 298 HOH HOH . 
R 7 HOH A 67 767 867 HOH HOH . 
R 7 HOH A 68 768 519 HOH HOH . 
R 7 HOH A 69 769 303 HOH HOH . 
R 7 HOH A 70 770 645 HOH HOH . 
R 7 HOH A 71 771 896 HOH HOH . 
R 7 HOH A 72 772 400 HOH HOH . 
R 7 HOH A 73 773 833 HOH HOH . 
R 7 HOH A 74 774 542 HOH HOH . 
R 7 HOH A 75 775 748 HOH HOH . 
R 7 HOH A 76 776 517 HOH HOH . 
R 7 HOH A 77 777 868 HOH HOH . 
R 7 HOH A 78 778 759 HOH HOH . 
S 7 HOH B 1 701 900 HOH HOH . 
S 7 HOH B 2 702 554 HOH HOH . 
S 7 HOH B 3 703 291 HOH HOH . 
S 7 HOH B 4 704 237 HOH HOH . 
S 7 HOH B 5 705 233 HOH HOH . 
S 7 HOH B 6 706 13 HOH HOH . 
S 7 HOH B 7 707 22 HOH HOH . 
S 7 HOH B 8 708 47 HOH HOH . 
S 7 HOH B 9 709 80 HOH HOH . 
S 7 HOH B 10 710 33 HOH HOH . 
S 7 HOH B 11 711 898 HOH HOH . 
S 7 HOH B 12 712 42 HOH HOH . 
S 7 HOH B 13 713 109 HOH HOH . 
S 7 HOH B 14 714 45 HOH HOH . 
S 7 HOH B 15 715 67 HOH HOH . 
S 7 HOH B 16 716 232 HOH HOH . 
S 7 HOH B 17 717 616 HOH HOH . 
S 7 HOH B 18 718 692 HOH HOH . 
S 7 HOH B 19 719 49 HOH HOH . 
S 7 HOH B 20 720 91 HOH HOH . 
S 7 HOH B 21 721 176 HOH HOH . 
S 7 HOH B 22 722 395 HOH HOH . 
S 7 HOH B 23 723 154 HOH HOH . 
S 7 HOH B 24 724 873 HOH HOH . 
S 7 HOH B 25 725 650 HOH HOH . 
S 7 HOH B 26 726 351 HOH HOH . 
S 7 HOH B 27 727 500 HOH HOH . 
S 7 HOH B 28 728 666 HOH HOH . 
S 7 HOH B 29 729 756 HOH HOH . 
S 7 HOH B 30 730 549 HOH HOH . 
S 7 HOH B 31 731 159 HOH HOH . 
S 7 HOH B 32 732 550 HOH HOH . 
S 7 HOH B 33 733 826 HOH HOH . 
S 7 HOH B 34 734 483 HOH HOH . 
S 7 HOH B 35 735 137 HOH HOH . 
S 7 HOH B 36 736 879 HOH HOH . 
S 7 HOH B 37 737 133 HOH HOH . 
S 7 HOH B 38 738 167 HOH HOH . 
S 7 HOH B 39 739 509 HOH HOH . 
S 7 HOH B 40 740 226 HOH HOH . 
S 7 HOH B 41 741 711 HOH HOH . 
S 7 HOH B 42 742 899 HOH HOH . 
S 7 HOH B 43 743 347 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 I1X . . . K 2 13.714 -8.261 -37.802 1 111.65 ? C18 I1X 601 B 1 
HETATM 2 C C20 I1X . . . K 2 13.601 -10.024 -39.449 1 116.09 ? C20 I1X 601 B 1 
HETATM 3 C C22 I1X . . . K 2 15.142 -10.213 -41.412 1 103.14 ? C22 I1X 601 B 1 
HETATM 4 O O01 I1X . . . K 2 13.848 -7.228 -35.619 1 111.48 ? O01 I1X 601 B 1 
HETATM 5 C C02 I1X . . . K 2 13.127 -7.636 -36.535 1 108.13 ? C02 I1X 601 B 1 
HETATM 6 N N03 I1X . . . K 2 11.642 -7.511 -36.422 1 100.07 ? N03 I1X 601 B 1 
HETATM 7 C C04 I1X . . . K 2 10.964 -6.922 -35.281 1 95.16 ? C04 I1X 601 B 1 
HETATM 8 C C19 I1X . . . K 2 13.119 -9.421 -38.282 1 114.72 ? C19 I1X 601 B 1 
HETATM 9 C C21 I1X . . . K 2 14.675 -9.5 -40.159 1 111.39 ? C21 I1X 601 B 1 
HETATM 10 C C23 I1X . . . K 2 15.285 -8.342 -39.71 1 114.62 ? C23 I1X 601 B 1 
HETATM 11 N N24 I1X . . . K 2 16.406 -7.796 -40.453 1 118.37 ? N24 I1X 601 B 1 
HETATM 12 O O25 I1X . . . K 2 16.26 -7.176 -41.595 1 119.2 ? O25 I1X 601 B 1 
HETATM 13 O O26 I1X . . . K 2 17.539 -7.922 -40.032 1 119.08 ? O26 I1X 601 B 1 
HETATM 14 C C27 I1X . . . K 2 14.785 -7.727 -38.513 1 112.79 ? C27 I1X 601 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           745 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#