data_7R5W # _model_server_result.job_id hd56K-mENnSaK0HUgN8Mfw _model_server_result.datetime_utc '2024-11-14 23:17:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 7R5W # _exptl.entry_id 7R5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-cyclopropyl-1H-pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7R5W _cell.length_a 81.06 _cell.length_b 81.06 _cell.length_c 113.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 M N N # _chem_comp.formula 'C7 H8 N2 O2' _chem_comp.formula_weight 152.151 _chem_comp.id I5Z _chem_comp.mon_nstd_flag . _chem_comp.name 6-cyclopropyl-1H-pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O05 C04 I5Z doub 165 n n C04 C06 I5Z sing 166 n n C04 N03 I5Z sing 167 n n C06 C07 I5Z doub 168 n n C11 C09 I5Z sing 169 n n C11 C10 I5Z sing 170 n n N03 C02 I5Z sing 171 n n C07 C09 I5Z sing 172 n n C07 N08 I5Z sing 173 n n C09 C10 I5Z sing 174 n n C02 N08 I5Z sing 175 n n C02 O01 I5Z doub 176 n n C10 H1 I5Z sing 177 n n C10 H2 I5Z sing 178 n n C09 H5 I5Z sing 179 n n C11 H6 I5Z sing 180 n n C11 H7 I5Z sing 181 n n N03 H8 I5Z sing 182 n n C06 H3 I5Z sing 183 n n N08 H4 I5Z sing 184 n n # _atom_sites.entry_id 7R5W _atom_sites.fract_transf_matrix[1][1] 0.012337 _atom_sites.fract_transf_matrix[1][2] 0.007123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 601 1 SO4 SO4 . D 2 SO4 A 1 602 3 SO4 SO4 . E 2 SO4 A 1 603 5 SO4 SO4 . F 3 I5Z A 1 604 601 I5Z LIG . G 4 CL A 1 605 1 CL CL . H 2 SO4 A 1 606 1 SO4 SO4 . I 2 SO4 B 1 601 2 SO4 SO4 . J 2 SO4 B 1 602 6 SO4 SO4 . K 5 GOL B 1 603 600 GOL GOL . L 4 CL B 1 604 2 CL CL . M 3 I5Z B 1 605 601 I5Z LIG . N 5 GOL B 1 606 603 GOL GOL . O 5 GOL B 1 607 604 GOL GOL . P 6 HOH A 1 701 188 HOH HOH . P 6 HOH A 2 702 99 HOH HOH . P 6 HOH A 3 703 64 HOH HOH . P 6 HOH A 4 704 108 HOH HOH . P 6 HOH A 5 705 82 HOH HOH . P 6 HOH A 6 706 88 HOH HOH . P 6 HOH A 7 707 174 HOH HOH . P 6 HOH A 8 708 240 HOH HOH . P 6 HOH A 9 709 190 HOH HOH . P 6 HOH A 10 710 251 HOH HOH . P 6 HOH A 11 711 23 HOH HOH . P 6 HOH A 12 712 51 HOH HOH . P 6 HOH A 13 713 47 HOH HOH . P 6 HOH A 14 714 31 HOH HOH . P 6 HOH A 15 715 112 HOH HOH . P 6 HOH A 16 716 256 HOH HOH . P 6 HOH A 17 717 24 HOH HOH . P 6 HOH A 18 718 32 HOH HOH . P 6 HOH A 19 719 44 HOH HOH . P 6 HOH A 20 720 113 HOH HOH . P 6 HOH A 21 721 144 HOH HOH . P 6 HOH A 22 722 267 HOH HOH . P 6 HOH A 23 723 6 HOH HOH . P 6 HOH A 24 724 40 HOH HOH . P 6 HOH A 25 725 107 HOH HOH . P 6 HOH A 26 726 79 HOH HOH . P 6 HOH A 27 727 91 HOH HOH . P 6 HOH A 28 728 2 HOH HOH . P 6 HOH A 29 729 63 HOH HOH . P 6 HOH A 30 730 39 HOH HOH . P 6 HOH A 31 731 120 HOH HOH . P 6 HOH A 32 732 15 HOH HOH . P 6 HOH A 33 733 59 HOH HOH . P 6 HOH A 34 734 90 HOH HOH . P 6 HOH A 35 735 4 HOH HOH . P 6 HOH A 36 736 20 HOH HOH . P 6 HOH A 37 737 57 HOH HOH . P 6 HOH A 38 738 230 HOH HOH . P 6 HOH A 39 739 186 HOH HOH . P 6 HOH A 40 740 127 HOH HOH . P 6 HOH A 41 741 86 HOH HOH . P 6 HOH A 42 742 21 HOH HOH . P 6 HOH A 43 743 58 HOH HOH . P 6 HOH A 44 744 36 HOH HOH . P 6 HOH A 45 745 13 HOH HOH . P 6 HOH A 46 746 153 HOH HOH . P 6 HOH A 47 747 156 HOH HOH . P 6 HOH A 48 748 19 HOH HOH . P 6 HOH A 49 749 245 HOH HOH . P 6 HOH A 50 750 60 HOH HOH . P 6 HOH A 51 751 142 HOH HOH . P 6 HOH A 52 752 266 HOH HOH . P 6 HOH A 53 753 8 HOH HOH . P 6 HOH A 54 754 18 HOH HOH . P 6 HOH A 55 755 48 HOH HOH . P 6 HOH A 56 756 71 HOH HOH . P 6 HOH A 57 757 276 HOH HOH . P 6 HOH A 58 758 163 HOH HOH . P 6 HOH A 59 759 7 HOH HOH . P 6 HOH A 60 760 34 HOH HOH . P 6 HOH A 61 761 167 HOH HOH . P 6 HOH A 62 762 72 HOH HOH . P 6 HOH A 63 763 75 HOH HOH . P 6 HOH A 64 764 43 HOH HOH . P 6 HOH A 65 765 45 HOH HOH . P 6 HOH A 66 766 274 HOH HOH . P 6 HOH A 67 767 74 HOH HOH . P 6 HOH A 68 768 192 HOH HOH . P 6 HOH A 69 769 54 HOH HOH . P 6 HOH A 70 770 81 HOH HOH . P 6 HOH A 71 771 73 HOH HOH . P 6 HOH A 72 772 160 HOH HOH . P 6 HOH A 73 773 205 HOH HOH . P 6 HOH A 74 774 5 HOH HOH . P 6 HOH A 75 775 180 HOH HOH . P 6 HOH A 76 776 119 HOH HOH . P 6 HOH A 77 777 22 HOH HOH . P 6 HOH A 78 778 139 HOH HOH . P 6 HOH A 79 779 117 HOH HOH . P 6 HOH A 80 780 187 HOH HOH . P 6 HOH A 81 781 17 HOH HOH . P 6 HOH A 82 782 80 HOH HOH . P 6 HOH A 83 783 92 HOH HOH . P 6 HOH A 84 784 281 HOH HOH . P 6 HOH A 85 785 42 HOH HOH . P 6 HOH A 86 786 109 HOH HOH . P 6 HOH A 87 787 125 HOH HOH . P 6 HOH A 88 788 191 HOH HOH . P 6 HOH A 89 789 148 HOH HOH . P 6 HOH A 90 790 94 HOH HOH . P 6 HOH A 91 791 98 HOH HOH . P 6 HOH A 92 792 89 HOH HOH . P 6 HOH A 93 793 104 HOH HOH . P 6 HOH A 94 794 140 HOH HOH . P 6 HOH A 95 795 100 HOH HOH . P 6 HOH A 96 796 110 HOH HOH . P 6 HOH A 97 797 115 HOH HOH . P 6 HOH A 98 798 235 HOH HOH . P 6 HOH A 99 799 33 HOH HOH . P 6 HOH A 100 800 198 HOH HOH . P 6 HOH A 101 801 195 HOH HOH . P 6 HOH A 102 802 16 HOH HOH . P 6 HOH A 103 803 116 HOH HOH . P 6 HOH A 104 804 101 HOH HOH . P 6 HOH A 105 805 97 HOH HOH . P 6 HOH A 106 806 166 HOH HOH . P 6 HOH A 107 807 268 HOH HOH . P 6 HOH A 108 808 135 HOH HOH . P 6 HOH A 109 809 229 HOH HOH . P 6 HOH A 110 810 263 HOH HOH . P 6 HOH A 111 811 239 HOH HOH . P 6 HOH A 112 812 172 HOH HOH . P 6 HOH A 113 813 209 HOH HOH . P 6 HOH A 114 814 176 HOH HOH . P 6 HOH A 115 815 206 HOH HOH . P 6 HOH A 116 816 250 HOH HOH . P 6 HOH A 117 817 226 HOH HOH . P 6 HOH A 118 818 249 HOH HOH . P 6 HOH A 119 819 114 HOH HOH . P 6 HOH A 120 820 131 HOH HOH . P 6 HOH A 121 821 262 HOH HOH . P 6 HOH A 122 822 132 HOH HOH . P 6 HOH A 123 823 213 HOH HOH . P 6 HOH A 124 824 201 HOH HOH . P 6 HOH A 125 825 178 HOH HOH . P 6 HOH A 126 826 272 HOH HOH . P 6 HOH A 127 827 227 HOH HOH . P 6 HOH A 128 828 136 HOH HOH . P 6 HOH A 129 829 271 HOH HOH . P 6 HOH A 130 830 105 HOH HOH . P 6 HOH A 131 831 280 HOH HOH . P 6 HOH A 132 832 208 HOH HOH . P 6 HOH A 133 833 257 HOH HOH . P 6 HOH A 134 834 246 HOH HOH . P 6 HOH A 135 835 247 HOH HOH . Q 6 HOH B 1 701 62 HOH HOH . Q 6 HOH B 2 702 215 HOH HOH . Q 6 HOH B 3 703 138 HOH HOH . Q 6 HOH B 4 704 199 HOH HOH . Q 6 HOH B 5 705 126 HOH HOH . Q 6 HOH B 6 706 95 HOH HOH . Q 6 HOH B 7 707 278 HOH HOH . Q 6 HOH B 8 708 76 HOH HOH . Q 6 HOH B 9 709 83 HOH HOH . Q 6 HOH B 10 710 77 HOH HOH . Q 6 HOH B 11 711 173 HOH HOH . Q 6 HOH B 12 712 217 HOH HOH . Q 6 HOH B 13 713 179 HOH HOH . Q 6 HOH B 14 714 233 HOH HOH . Q 6 HOH B 15 715 155 HOH HOH . Q 6 HOH B 16 716 28 HOH HOH . Q 6 HOH B 17 717 157 HOH HOH . Q 6 HOH B 18 718 238 HOH HOH . Q 6 HOH B 19 719 102 HOH HOH . Q 6 HOH B 20 720 122 HOH HOH . Q 6 HOH B 21 721 282 HOH HOH . Q 6 HOH B 22 722 29 HOH HOH . Q 6 HOH B 23 723 67 HOH HOH . Q 6 HOH B 24 724 35 HOH HOH . Q 6 HOH B 25 725 273 HOH HOH . Q 6 HOH B 26 726 3 HOH HOH . Q 6 HOH B 27 727 150 HOH HOH . Q 6 HOH B 28 728 171 HOH HOH . Q 6 HOH B 29 729 30 HOH HOH . Q 6 HOH B 30 730 269 HOH HOH . Q 6 HOH B 31 731 41 HOH HOH . Q 6 HOH B 32 732 70 HOH HOH . Q 6 HOH B 33 733 46 HOH HOH . Q 6 HOH B 34 734 168 HOH HOH . Q 6 HOH B 35 735 25 HOH HOH . Q 6 HOH B 36 736 123 HOH HOH . Q 6 HOH B 37 737 253 HOH HOH . Q 6 HOH B 38 738 12 HOH HOH . Q 6 HOH B 39 739 161 HOH HOH . Q 6 HOH B 40 740 181 HOH HOH . Q 6 HOH B 41 741 164 HOH HOH . Q 6 HOH B 42 742 207 HOH HOH . Q 6 HOH B 43 743 78 HOH HOH . Q 6 HOH B 44 744 143 HOH HOH . Q 6 HOH B 45 745 255 HOH HOH . Q 6 HOH B 46 746 11 HOH HOH . Q 6 HOH B 47 747 66 HOH HOH . Q 6 HOH B 48 748 68 HOH HOH . Q 6 HOH B 49 749 38 HOH HOH . Q 6 HOH B 50 750 260 HOH HOH . Q 6 HOH B 51 751 169 HOH HOH . Q 6 HOH B 52 752 165 HOH HOH . Q 6 HOH B 53 753 14 HOH HOH . Q 6 HOH B 54 754 170 HOH HOH . Q 6 HOH B 55 755 106 HOH HOH . Q 6 HOH B 56 756 49 HOH HOH . Q 6 HOH B 57 757 137 HOH HOH . Q 6 HOH B 58 758 85 HOH HOH . Q 6 HOH B 59 759 228 HOH HOH . Q 6 HOH B 60 760 96 HOH HOH . Q 6 HOH B 61 761 56 HOH HOH . Q 6 HOH B 62 762 27 HOH HOH . Q 6 HOH B 63 763 26 HOH HOH . Q 6 HOH B 64 764 65 HOH HOH . Q 6 HOH B 65 765 37 HOH HOH . Q 6 HOH B 66 766 121 HOH HOH . Q 6 HOH B 67 767 84 HOH HOH . Q 6 HOH B 68 768 128 HOH HOH . Q 6 HOH B 69 769 55 HOH HOH . Q 6 HOH B 70 770 242 HOH HOH . Q 6 HOH B 71 771 175 HOH HOH . Q 6 HOH B 72 772 218 HOH HOH . Q 6 HOH B 73 773 204 HOH HOH . Q 6 HOH B 74 774 232 HOH HOH . Q 6 HOH B 75 775 258 HOH HOH . Q 6 HOH B 76 776 9 HOH HOH . Q 6 HOH B 77 777 118 HOH HOH . Q 6 HOH B 78 778 111 HOH HOH . Q 6 HOH B 79 779 129 HOH HOH . Q 6 HOH B 80 780 203 HOH HOH . Q 6 HOH B 81 781 184 HOH HOH . Q 6 HOH B 82 782 275 HOH HOH . Q 6 HOH B 83 783 158 HOH HOH . Q 6 HOH B 84 784 133 HOH HOH . Q 6 HOH B 85 785 224 HOH HOH . Q 6 HOH B 86 786 124 HOH HOH . Q 6 HOH B 87 787 52 HOH HOH . Q 6 HOH B 88 788 279 HOH HOH . Q 6 HOH B 89 789 145 HOH HOH . Q 6 HOH B 90 790 212 HOH HOH . Q 6 HOH B 91 791 149 HOH HOH . Q 6 HOH B 92 792 154 HOH HOH . Q 6 HOH B 93 793 202 HOH HOH . Q 6 HOH B 94 794 193 HOH HOH . Q 6 HOH B 95 795 69 HOH HOH . Q 6 HOH B 96 796 210 HOH HOH . Q 6 HOH B 97 797 50 HOH HOH . Q 6 HOH B 98 798 241 HOH HOH . Q 6 HOH B 99 799 200 HOH HOH . Q 6 HOH B 100 800 103 HOH HOH . Q 6 HOH B 101 801 277 HOH HOH . Q 6 HOH B 102 802 265 HOH HOH . Q 6 HOH B 103 803 261 HOH HOH . Q 6 HOH B 104 804 264 HOH HOH . Q 6 HOH B 105 805 189 HOH HOH . Q 6 HOH B 106 806 141 HOH HOH . Q 6 HOH B 107 807 231 HOH HOH . Q 6 HOH B 108 808 221 HOH HOH . Q 6 HOH B 109 809 270 HOH HOH . Q 6 HOH B 110 810 130 HOH HOH . Q 6 HOH B 111 811 252 HOH HOH . Q 6 HOH B 112 812 244 HOH HOH . Q 6 HOH B 113 813 162 HOH HOH . Q 6 HOH B 114 814 223 HOH HOH . Q 6 HOH B 115 815 185 HOH HOH . Q 6 HOH B 116 816 222 HOH HOH . Q 6 HOH B 117 817 214 HOH HOH . Q 6 HOH B 118 818 216 HOH HOH . Q 6 HOH B 119 819 194 HOH HOH . Q 6 HOH B 120 820 211 HOH HOH . Q 6 HOH B 121 821 196 HOH HOH . Q 6 HOH B 122 822 234 HOH HOH . Q 6 HOH B 123 823 259 HOH HOH . Q 6 HOH B 124 824 237 HOH HOH . Q 6 HOH B 125 825 254 HOH HOH . Q 6 HOH B 126 826 197 HOH HOH . Q 6 HOH B 127 827 236 HOH HOH . Q 6 HOH B 128 828 219 HOH HOH . Q 6 HOH B 129 829 134 HOH HOH . Q 6 HOH B 130 830 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 I5Z . . . F 3 13.333 27.021 -4.98 1 16.38 ? C10 I5Z 604 A 1 HETATM 2 C C02 I5Z . . . F 3 17.419 25.263 -5.696 1 21.54 ? C02 I5Z 604 A 1 HETATM 3 C C04 I5Z . . . F 3 18.109 27.48 -6.767 1 20.13 ? C04 I5Z 604 A 1 HETATM 4 C C06 I5Z . . . F 3 16.706 27.973 -6.741 1 17.56 ? C06 I5Z 604 A 1 HETATM 5 C C07 I5Z . . . F 3 15.702 27.048 -6.193 1 17.51 ? C07 I5Z 604 A 1 HETATM 6 C C09 I5Z . . . F 3 14.244 27.398 -6.136 1 17.72 ? C09 I5Z 604 A 1 HETATM 7 C C11 I5Z . . . F 3 13.208 26.296 -6.318 1 16.58 ? C11 I5Z 604 A 1 HETATM 8 N N03 I5Z . . . F 3 18.455 26.18 -6.24 1 17.83 ? N03 I5Z 604 A 1 HETATM 9 N N08 I5Z . . . F 3 16.02 25.731 -5.693 1 16.07 ? N08 I5Z 604 A 1 HETATM 10 O O01 I5Z . . . F 3 17.711 24.178 -5.301 1 22.57 ? O01 I5Z 604 A 1 HETATM 11 O O05 I5Z . . . F 3 18.958 28.167 -7.211 1 24.22 ? O05 I5Z 604 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #