data_7R5Z # _model_server_result.job_id vlFoGN26ya8rITKQJcxCog _model_server_result.datetime_utc '2024-12-02 12:14:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7R5Z # _exptl.entry_id 7R5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R5Z _cell.length_a 48.99 _cell.length_b 87.36 _cell.length_c 93.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 120 A VAL 118 1_555 D CA CA . A CA 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 D CA CA . A CA 201 1_555 J O HOH . A HOH 320 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc3 D CA CA . A CA 201 1_555 B O VAL 120 B VAL 118 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 D CA CA . A CA 201 1_555 K O HOH . B HOH 320 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc5 D CA CA . A CA 201 1_555 C O VAL 120 C VAL 118 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc6 D CA CA . A CA 201 1_555 L O HOH . C HOH 324 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7R5Z _atom_sites.fract_transf_matrix[1][1] 0.020412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 201 201 CA CA . E 3 CL A 1 202 211 CL CL . F 3 CL A 1 203 212 CL CL . G 3 CL B 1 201 211 CL CL . H 3 CL C 1 201 211 CL CL . I 3 CL C 1 202 212 CL CL . J 4 HOH A 1 301 103 HOH HOH . J 4 HOH A 2 302 115 HOH HOH . J 4 HOH A 3 303 113 HOH HOH . J 4 HOH A 4 304 70 HOH HOH . J 4 HOH A 5 305 92 HOH HOH . J 4 HOH A 6 306 15 HOH HOH . J 4 HOH A 7 307 48 HOH HOH . J 4 HOH A 8 308 40 HOH HOH . J 4 HOH A 9 309 26 HOH HOH . J 4 HOH A 10 310 78 HOH HOH . J 4 HOH A 11 311 47 HOH HOH . J 4 HOH A 12 312 24 HOH HOH . J 4 HOH A 13 313 25 HOH HOH . J 4 HOH A 14 314 38 HOH HOH . J 4 HOH A 15 315 64 HOH HOH . J 4 HOH A 16 316 34 HOH HOH . J 4 HOH A 17 317 77 HOH HOH . J 4 HOH A 18 318 39 HOH HOH . J 4 HOH A 19 319 71 HOH HOH . J 4 HOH A 20 320 17 HOH HOH . J 4 HOH A 21 321 28 HOH HOH . J 4 HOH A 22 322 42 HOH HOH . J 4 HOH A 23 323 9 HOH HOH . J 4 HOH A 24 324 18 HOH HOH . J 4 HOH A 25 325 13 HOH HOH . J 4 HOH A 26 326 74 HOH HOH . J 4 HOH A 27 327 62 HOH HOH . J 4 HOH A 28 328 19 HOH HOH . J 4 HOH A 29 329 11 HOH HOH . J 4 HOH A 30 330 6 HOH HOH . J 4 HOH A 31 331 89 HOH HOH . J 4 HOH A 32 332 73 HOH HOH . J 4 HOH A 33 333 72 HOH HOH . J 4 HOH A 34 334 51 HOH HOH . J 4 HOH A 35 335 58 HOH HOH . J 4 HOH A 36 336 56 HOH HOH . J 4 HOH A 37 337 66 HOH HOH . J 4 HOH A 38 338 85 HOH HOH . J 4 HOH A 39 339 55 HOH HOH . J 4 HOH A 40 340 117 HOH HOH . J 4 HOH A 41 341 120 HOH HOH . J 4 HOH A 42 342 116 HOH HOH . J 4 HOH A 43 343 112 HOH HOH . J 4 HOH A 44 344 95 HOH HOH . J 4 HOH A 45 345 67 HOH HOH . J 4 HOH A 46 346 44 HOH HOH . J 4 HOH A 47 347 94 HOH HOH . J 4 HOH A 48 348 106 HOH HOH . J 4 HOH A 49 349 107 HOH HOH . K 4 HOH B 1 301 110 HOH HOH . K 4 HOH B 2 302 68 HOH HOH . K 4 HOH B 3 303 37 HOH HOH . K 4 HOH B 4 304 83 HOH HOH . K 4 HOH B 5 305 5 HOH HOH . K 4 HOH B 6 306 54 HOH HOH . K 4 HOH B 7 307 10 HOH HOH . K 4 HOH B 8 308 46 HOH HOH . K 4 HOH B 9 309 23 HOH HOH . K 4 HOH B 10 310 52 HOH HOH . K 4 HOH B 11 311 32 HOH HOH . K 4 HOH B 12 312 111 HOH HOH . K 4 HOH B 13 313 108 HOH HOH . K 4 HOH B 14 314 3 HOH HOH . K 4 HOH B 15 315 22 HOH HOH . K 4 HOH B 16 316 75 HOH HOH . K 4 HOH B 17 317 12 HOH HOH . K 4 HOH B 18 318 90 HOH HOH . K 4 HOH B 19 319 76 HOH HOH . K 4 HOH B 20 320 101 HOH HOH . K 4 HOH B 21 321 87 HOH HOH . K 4 HOH B 22 322 31 HOH HOH . K 4 HOH B 23 323 63 HOH HOH . K 4 HOH B 24 324 119 HOH HOH . K 4 HOH B 25 325 109 HOH HOH . K 4 HOH B 26 326 45 HOH HOH . K 4 HOH B 27 327 59 HOH HOH . K 4 HOH B 28 328 100 HOH HOH . K 4 HOH B 29 329 114 HOH HOH . K 4 HOH B 30 330 91 HOH HOH . L 4 HOH C 1 301 98 HOH HOH . L 4 HOH C 2 302 65 HOH HOH . L 4 HOH C 3 303 88 HOH HOH . L 4 HOH C 4 304 53 HOH HOH . L 4 HOH C 5 305 8 HOH HOH . L 4 HOH C 6 306 43 HOH HOH . L 4 HOH C 7 307 84 HOH HOH . L 4 HOH C 8 308 33 HOH HOH . L 4 HOH C 9 309 82 HOH HOH . L 4 HOH C 10 310 80 HOH HOH . L 4 HOH C 11 311 27 HOH HOH . L 4 HOH C 12 312 81 HOH HOH . L 4 HOH C 13 313 79 HOH HOH . L 4 HOH C 14 314 7 HOH HOH . L 4 HOH C 15 315 60 HOH HOH . L 4 HOH C 16 316 50 HOH HOH . L 4 HOH C 17 317 41 HOH HOH . L 4 HOH C 18 318 14 HOH HOH . L 4 HOH C 19 319 16 HOH HOH . L 4 HOH C 20 320 49 HOH HOH . L 4 HOH C 21 321 4 HOH HOH . L 4 HOH C 22 322 21 HOH HOH . L 4 HOH C 23 323 1 HOH HOH . L 4 HOH C 24 324 93 HOH HOH . L 4 HOH C 25 325 2 HOH HOH . L 4 HOH C 26 326 35 HOH HOH . L 4 HOH C 27 327 36 HOH HOH . L 4 HOH C 28 328 30 HOH HOH . L 4 HOH C 29 329 69 HOH HOH . L 4 HOH C 30 330 86 HOH HOH . L 4 HOH C 31 331 29 HOH HOH . L 4 HOH C 32 332 61 HOH HOH . L 4 HOH C 33 333 105 HOH HOH . L 4 HOH C 34 334 118 HOH HOH . L 4 HOH C 35 335 99 HOH HOH . L 4 HOH C 36 336 20 HOH HOH . L 4 HOH C 37 337 104 HOH HOH . L 4 HOH C 38 338 97 HOH HOH . L 4 HOH C 39 339 57 HOH HOH . L 4 HOH C 40 340 102 HOH HOH . L 4 HOH C 41 341 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.463 _atom_site.Cartn_y 46.506 _atom_site.Cartn_z 63.255 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 34.2 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #