data_7R61 # _model_server_result.job_id FeNXfjWwsXe7i7RGqc3tPw _model_server_result.datetime_utc '2024-11-15 03:03:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7R61 # _exptl.entry_id 7R61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.472 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R61 _cell.length_a 70.646 _cell.length_b 104.076 _cell.length_c 38.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 481 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id 2IJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 2IJ _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.696 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H24 N4 O3' _chem_comp.formula_weight 416.472 _chem_comp.id 2IJ _chem_comp.mon_nstd_flag . _chem_comp.name 5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 2IJ sing 1 n n C26 C25 2IJ sing 2 n n N31 C30 2IJ doub 3 n n C27 N28 2IJ sing 4 n n C30 N28 2IJ sing 5 n n C25 C24 2IJ sing 6 n n O9 C8 2IJ doub 7 n n N28 C29 2IJ sing 8 n n C24 C29 2IJ sing 9 n n C24 C5 2IJ sing 10 n n C4 C5 2IJ doub 11 n y C4 C3 2IJ sing 12 n y C8 C3 2IJ sing 13 n n C8 N10 2IJ sing 14 n n C5 C6 2IJ sing 15 n y C3 C2 2IJ doub 16 n y C6 N1 2IJ doub 17 n y C2 N1 2IJ sing 18 n y C2 O7 2IJ sing 19 n n O7 C11 2IJ sing 20 n n C11 C16 2IJ doub 21 n y C11 C12 2IJ sing 22 n y C16 C15 2IJ sing 23 n y C12 C13 2IJ doub 24 n y C15 C14 2IJ doub 25 n y C13 C14 2IJ sing 26 n y C14 O17 2IJ sing 27 n n C23 C22 2IJ doub 28 n y C23 C18 2IJ sing 29 n y O17 C18 2IJ sing 30 n n C22 C21 2IJ sing 31 n y C18 C19 2IJ doub 32 n y C21 C20 2IJ doub 33 n y C19 C20 2IJ sing 34 n y C12 H1 2IJ sing 35 n n C13 H2 2IJ sing 36 n n C15 H3 2IJ sing 37 n n C16 H4 2IJ sing 38 n n C19 H5 2IJ sing 39 n n C20 H6 2IJ sing 40 n n C21 H7 2IJ sing 41 n n C22 H8 2IJ sing 42 n n C24 H9 2IJ sing 43 n n C27 H10 2IJ sing 44 n n C27 H11 2IJ sing 45 n n C30 H12 2IJ sing 46 n n C4 H13 2IJ sing 47 n n C6 H14 2IJ sing 48 n n N10 H15 2IJ sing 49 n n N10 H16 2IJ sing 50 n n C23 H17 2IJ sing 51 n n C25 H18 2IJ sing 52 n n C25 H19 2IJ sing 53 n n C26 H20 2IJ sing 54 n n C26 H21 2IJ sing 55 n n C29 H22 2IJ sing 56 n n C29 H23 2IJ sing 57 n n N31 H24 2IJ sing 58 n n # _atom_sites.entry_id 7R61 _atom_sites.fract_transf_matrix[1][1] 0.014155 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2IJ A 1 701 0 2IJ INH . C 3 DMS A 1 702 1 DMS DMS . D 3 DMS A 1 703 2 DMS DMS . E 4 HOH A 1 801 89 HOH HOH . E 4 HOH A 2 802 105 HOH HOH . E 4 HOH A 3 803 64 HOH HOH . E 4 HOH A 4 804 9 HOH HOH . E 4 HOH A 5 805 67 HOH HOH . E 4 HOH A 6 806 92 HOH HOH . E 4 HOH A 7 807 44 HOH HOH . E 4 HOH A 8 808 15 HOH HOH . E 4 HOH A 9 809 43 HOH HOH . E 4 HOH A 10 810 58 HOH HOH . E 4 HOH A 11 811 93 HOH HOH . E 4 HOH A 12 812 63 HOH HOH . E 4 HOH A 13 813 54 HOH HOH . E 4 HOH A 14 814 46 HOH HOH . E 4 HOH A 15 815 70 HOH HOH . E 4 HOH A 16 816 33 HOH HOH . E 4 HOH A 17 817 84 HOH HOH . E 4 HOH A 18 818 88 HOH HOH . E 4 HOH A 19 819 37 HOH HOH . E 4 HOH A 20 820 55 HOH HOH . E 4 HOH A 21 821 16 HOH HOH . E 4 HOH A 22 822 79 HOH HOH . E 4 HOH A 23 823 90 HOH HOH . E 4 HOH A 24 824 24 HOH HOH . E 4 HOH A 25 825 73 HOH HOH . E 4 HOH A 26 826 91 HOH HOH . E 4 HOH A 27 827 66 HOH HOH . E 4 HOH A 28 828 42 HOH HOH . E 4 HOH A 29 829 5 HOH HOH . E 4 HOH A 30 830 77 HOH HOH . E 4 HOH A 31 831 11 HOH HOH . E 4 HOH A 32 832 41 HOH HOH . E 4 HOH A 33 833 78 HOH HOH . E 4 HOH A 34 834 48 HOH HOH . E 4 HOH A 35 835 4 HOH HOH . E 4 HOH A 36 836 25 HOH HOH . E 4 HOH A 37 837 95 HOH HOH . E 4 HOH A 38 838 22 HOH HOH . E 4 HOH A 39 839 8 HOH HOH . E 4 HOH A 40 840 47 HOH HOH . E 4 HOH A 41 841 36 HOH HOH . E 4 HOH A 42 842 76 HOH HOH . E 4 HOH A 43 843 6 HOH HOH . E 4 HOH A 44 844 49 HOH HOH . E 4 HOH A 45 845 23 HOH HOH . E 4 HOH A 46 846 7 HOH HOH . E 4 HOH A 47 847 1 HOH HOH . E 4 HOH A 48 848 56 HOH HOH . E 4 HOH A 49 849 102 HOH HOH . E 4 HOH A 50 850 101 HOH HOH . E 4 HOH A 51 851 19 HOH HOH . E 4 HOH A 52 852 51 HOH HOH . E 4 HOH A 53 853 98 HOH HOH . E 4 HOH A 54 854 86 HOH HOH . E 4 HOH A 55 855 52 HOH HOH . E 4 HOH A 56 856 3 HOH HOH . E 4 HOH A 57 857 18 HOH HOH . E 4 HOH A 58 858 53 HOH HOH . E 4 HOH A 59 859 57 HOH HOH . E 4 HOH A 60 860 74 HOH HOH . E 4 HOH A 61 861 59 HOH HOH . E 4 HOH A 62 862 2 HOH HOH . E 4 HOH A 63 863 40 HOH HOH . E 4 HOH A 64 864 75 HOH HOH . E 4 HOH A 65 865 97 HOH HOH . E 4 HOH A 66 866 104 HOH HOH . E 4 HOH A 67 867 28 HOH HOH . E 4 HOH A 68 868 30 HOH HOH . E 4 HOH A 69 869 65 HOH HOH . E 4 HOH A 70 870 94 HOH HOH . E 4 HOH A 71 871 61 HOH HOH . E 4 HOH A 72 872 26 HOH HOH . E 4 HOH A 73 873 68 HOH HOH . E 4 HOH A 74 874 38 HOH HOH . E 4 HOH A 75 875 50 HOH HOH . E 4 HOH A 76 876 14 HOH HOH . E 4 HOH A 77 877 21 HOH HOH . E 4 HOH A 78 878 96 HOH HOH . E 4 HOH A 79 879 39 HOH HOH . E 4 HOH A 80 880 45 HOH HOH . E 4 HOH A 81 881 100 HOH HOH . E 4 HOH A 82 882 20 HOH HOH . E 4 HOH A 83 883 13 HOH HOH . E 4 HOH A 84 884 35 HOH HOH . E 4 HOH A 85 885 12 HOH HOH . E 4 HOH A 86 886 17 HOH HOH . E 4 HOH A 87 887 32 HOH HOH . E 4 HOH A 88 888 85 HOH HOH . E 4 HOH A 89 889 71 HOH HOH . E 4 HOH A 90 890 10 HOH HOH . E 4 HOH A 91 891 29 HOH HOH . E 4 HOH A 92 892 31 HOH HOH . E 4 HOH A 93 893 80 HOH HOH . E 4 HOH A 94 894 69 HOH HOH . E 4 HOH A 95 895 83 HOH HOH . E 4 HOH A 96 896 81 HOH HOH . E 4 HOH A 97 897 62 HOH HOH . E 4 HOH A 98 898 27 HOH HOH . E 4 HOH A 99 899 99 HOH HOH . E 4 HOH A 100 900 82 HOH HOH . E 4 HOH A 101 901 103 HOH HOH . E 4 HOH A 102 902 72 HOH HOH . E 4 HOH A 103 903 34 HOH HOH . E 4 HOH A 104 904 60 HOH HOH . E 4 HOH A 105 905 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 2IJ . . . B 2 19.163 5.794 3.414 1 24.99 ? C2 2IJ 701 A 1 HETATM 2 C C3 2IJ . . . B 2 19.004 5.726 1.942 1 23.07 ? C3 2IJ 701 A 1 HETATM 3 C C8 2IJ . . . B 2 17.834 5.039 1.319 1 19.25 ? C8 2IJ 701 A 1 HETATM 4 C C11 2IJ . . . B 2 18.057 5.446 5.483 1 26.82 ? C11 2IJ 701 A 1 HETATM 5 C C12 2IJ . . . B 2 18.131 4.418 6.43 1 25.77 ? C12 2IJ 701 A 1 HETATM 6 C C13 2IJ . . . B 2 17.947 4.679 7.779 1 24.99 ? C13 2IJ 701 A 1 HETATM 7 C C14 2IJ . . . B 2 17.697 5.989 8.203 1 24.93 ? C14 2IJ 701 A 1 HETATM 8 C C15 2IJ . . . B 2 17.644 7.014 7.254 1 24.24 ? C15 2IJ 701 A 1 HETATM 9 C C16 2IJ . . . B 2 17.832 6.763 5.908 1 25.21 ? C16 2IJ 701 A 1 HETATM 10 O O17 2IJ . . . B 2 17.521 6.269 9.521 1 26.44 ? O17 2IJ 701 A 1 HETATM 11 C C19 2IJ . . . B 2 16.604 7.747 11.162 1 25.11 ? C19 2IJ 701 A 1 HETATM 12 C C20 2IJ . . . B 2 15.506 8.501 11.616 1 24.34 ? C20 2IJ 701 A 1 HETATM 13 C C21 2IJ . . . B 2 14.294 8.569 10.876 1 25.01 ? C21 2IJ 701 A 1 HETATM 14 C C22 2IJ . . . B 2 14.177 7.901 9.668 1 28.21 ? C22 2IJ 701 A 1 HETATM 15 C C24 2IJ . . . B 2 21.965 7.692 0.831 1 35.22 ? C24 2IJ 701 A 1 HETATM 16 C C27 2IJ . . . B 2 24.594 8.607 0.096 1 41.97 ? C27 2IJ 701 A 1 HETATM 17 C C30 2IJ . . . B 2 23.325 10.738 0.126 1 37.04 ? C30 2IJ 701 A 1 HETATM 18 N N1 2IJ . . . B 2 20.214 6.459 3.967 1 25.18 ? N1 2IJ 701 A 1 HETATM 19 C C4 2IJ . . . B 2 19.96 6.324 1.153 1 25.31 ? C4 2IJ 701 A 1 HETATM 20 C C5 2IJ . . . B 2 21.021 7.011 1.754 1 30.24 ? C5 2IJ 701 A 1 HETATM 21 C C6 2IJ . . . B 2 21.122 7.053 3.164 1 28.21 ? C6 2IJ 701 A 1 HETATM 22 O O7 2IJ . . . B 2 18.226 5.192 4.16 1 23.98 ? O7 2IJ 701 A 1 HETATM 23 O O9 2IJ . . . B 2 17.898 4.66 0.163 1 24.92 ? O9 2IJ 701 A 1 HETATM 24 N N10 2IJ . . . B 2 16.654 4.929 2.045 1 20.67 ? N10 2IJ 701 A 1 HETATM 25 C C18 2IJ . . . B 2 16.462 7.04 9.963 1 27.86 ? C18 2IJ 701 A 1 HETATM 26 C C23 2IJ . . . B 2 15.27 7.15 9.223 1 26.57 ? C23 2IJ 701 A 1 HETATM 27 C C25 2IJ . . . B 2 22.981 6.754 0.161 1 39.49 ? C25 2IJ 701 A 1 HETATM 28 C C26 2IJ . . . B 2 23.882 7.576 -0.773 1 39.72 ? C26 2IJ 701 A 1 HETATM 29 N N28 2IJ . . . B 2 23.503 9.479 0.573 1 41.36 ? N28 2IJ 701 A 1 HETATM 30 C C29 2IJ . . . B 2 22.651 8.837 1.566 1 36.56 ? C29 2IJ 701 A 1 HETATM 31 N N31 2IJ . . . B 2 24.185 11.187 -0.696 1 37.41 ? N31 2IJ 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #