data_7R6G # _model_server_result.job_id dRzcgArkEa1dDCh0BschqQ _model_server_result.datetime_utc '2024-11-17 23:32:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7R6G # _exptl.entry_id 7R6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R6G _cell.length_a 99.53 _cell.length_b 99.53 _cell.length_c 42.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 7R6G _atom_sites.fract_transf_matrix[1][1] 0.010047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TOP A 1 201 201 TOP TOP . D 3 NDP A 1 202 3 NDP NDP . E 4 SO4 A 1 203 2 SO4 SO4 . F 2 TOP B 1 201 201 TOP TOP . G 3 NDP B 1 202 2 NDP NDP . H 5 HOH A 1 301 5 HOH HOH . H 5 HOH A 2 302 7 HOH HOH . H 5 HOH A 3 303 6 HOH HOH . H 5 HOH A 4 304 8 HOH HOH . H 5 HOH A 5 305 2 HOH HOH . H 5 HOH A 6 306 1 HOH HOH . I 5 HOH B 1 301 11 HOH HOH . I 5 HOH B 2 302 9 HOH HOH . I 5 HOH B 3 303 3 HOH HOH . I 5 HOH B 4 304 4 HOH HOH . I 5 HOH B 5 305 12 HOH HOH . I 5 HOH B 6 306 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 20.442 -23.446 10.002 1 42.85 ? PA NDP 202 A 1 HETATM 2 O O1A NDP . . . D 3 19.409 -24.507 9.832 1 38.84 ? O1A NDP 202 A 1 HETATM 3 O O2A NDP . . . D 3 21.783 -23.591 9.385 1 33.94 ? O2A NDP 202 A 1 HETATM 4 O O5B NDP . . . D 3 20.609 -23.077 11.56 1 39.5 ? O5B NDP 202 A 1 HETATM 5 C C5B NDP . . . D 3 21.728 -22.239 11.905 1 34.2 ? C5B NDP 202 A 1 HETATM 6 C C4B NDP . . . D 3 21.965 -22.32 13.385 1 35.74 ? C4B NDP 202 A 1 HETATM 7 O O4B NDP . . . D 3 22.752 -23.508 13.677 1 37.32 ? O4B NDP 202 A 1 HETATM 8 C C3B NDP . . . D 3 22.743 -21.161 14.022 1 32.77 ? C3B NDP 202 A 1 HETATM 9 O O3B NDP . . . D 3 21.868 -20.047 14.211 1 32.31 ? O3B NDP 202 A 1 HETATM 10 C C2B NDP . . . D 3 23.272 -21.864 15.27 1 35.27 ? C2B NDP 202 A 1 HETATM 11 O O2B NDP . . . D 3 22.378 -22.203 16.362 1 36.15 ? O2B NDP 202 A 1 HETATM 12 C C1B NDP . . . D 3 23.674 -23.226 14.704 1 36.8 ? C1B NDP 202 A 1 HETATM 13 N N9A NDP . . . D 3 25.034 -23.321 14.172 1 38.3 ? N9A NDP 202 A 1 HETATM 14 C C8A NDP . . . D 3 25.428 -23.201 12.865 1 43.45 ? C8A NDP 202 A 1 HETATM 15 N N7A NDP . . . D 3 26.714 -23.377 12.678 1 43.5 ? N7A NDP 202 A 1 HETATM 16 C C5A NDP . . . D 3 27.219 -23.634 13.942 1 44.18 ? C5A NDP 202 A 1 HETATM 17 C C6A NDP . . . D 3 28.527 -23.893 14.413 1 38.65 ? C6A NDP 202 A 1 HETATM 18 N N6A NDP . . . D 3 29.616 -23.98 13.651 1 34.89 ? N6A NDP 202 A 1 HETATM 19 N N1A NDP . . . D 3 28.662 -24.111 15.737 1 39.45 ? N1A NDP 202 A 1 HETATM 20 C C2A NDP . . . D 3 27.574 -24.054 16.511 1 41.48 ? C2A NDP 202 A 1 HETATM 21 N N3A NDP . . . D 3 26.306 -23.815 16.184 1 39.6 ? N3A NDP 202 A 1 HETATM 22 C C4A NDP . . . D 3 26.187 -23.61 14.868 1 40.76 ? C4A NDP 202 A 1 HETATM 23 O O3 NDP . . . D 3 19.821 -22.076 9.505 1 38.62 ? O3 NDP 202 A 1 HETATM 24 P PN NDP . . . D 3 19.572 -21.394 8.107 1 41.05 ? PN NDP 202 A 1 HETATM 25 O O1N NDP . . . D 3 20.863 -20.849 7.608 1 47.81 ? O1N NDP 202 A 1 HETATM 26 O O2N NDP . . . D 3 18.744 -22.233 7.2 1 37.66 ? O2N NDP 202 A 1 HETATM 27 O O5D NDP . . . D 3 18.691 -20.182 8.655 1 45.77 ? O5D NDP 202 A 1 HETATM 28 C C5D NDP . . . D 3 17.496 -19.727 7.972 1 60.47 ? C5D NDP 202 A 1 HETATM 29 C C4D NDP . . . D 3 16.715 -18.892 8.958 1 79.84 ? C4D NDP 202 A 1 HETATM 30 O O4D NDP . . . D 3 16.888 -17.475 8.691 1 92.75 ? O4D NDP 202 A 1 HETATM 31 C C3D NDP . . . D 3 15.193 -19.118 9.011 1 84.53 ? C3D NDP 202 A 1 HETATM 32 O O3D NDP . . . D 3 14.848 -20.104 9.994 1 56.17 ? O3D NDP 202 A 1 HETATM 33 C C2D NDP . . . D 3 14.657 -17.672 9.243 1 93.54 ? C2D NDP 202 A 1 HETATM 34 O O2D NDP . . . D 3 13.752 -17.542 10.34 1 81.97 ? O2D NDP 202 A 1 HETATM 35 C C1D NDP . . . D 3 15.903 -16.789 9.429 1 92.57 ? C1D NDP 202 A 1 HETATM 36 N N7N NDP . . . D 3 11.028 -14.438 0.972 1 45.62 ? N7N NDP 202 A 1 HETATM 37 P P2B NDP . . . D 3 22.022 -21.028 17.465 1 39.26 ? P2B NDP 202 A 1 HETATM 38 O O1X NDP . . . D 3 21.196 -20.016 16.686 1 27.27 ? O1X NDP 202 A 1 HETATM 39 O O2X NDP . . . D 3 23.353 -20.441 18.033 1 29.32 ? O2X NDP 202 A 1 HETATM 40 O O3X NDP . . . D 3 21.169 -21.756 18.522 1 32.31 ? O3X NDP 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #