data_7R74 # _model_server_result.job_id 4Bu3AO2IRPVlT4_B8kNstQ _model_server_result.datetime_utc '2024-11-29 14:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":507}' # _entry.id 7R74 # _exptl.entry_id 7R74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.12 _cell.angle_gamma 90 _cell.entry_id 7R74 _cell.length_a 121.077 _cell.length_b 87.403 _cell.length_c 91.581 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,M,W,Z 1 1 B,C,N,O,P,Q,R,S,T,U,V,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 54 1_555 A SG CYS 31 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 76 A CYS 119 1_555 A SG CYS 89 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 102 A CYS 218 1_555 A SG CYS 131 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 112 A CYS 228 1_555 A SG CYS 123 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 180 A CYS 296 1_555 A SG CYS 199 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 246 A CYS 378 1_555 A SG CYS 313 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 253 A CYS 385 1_555 A SG CYS 286 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 C SG CYS 11 C CYS 54 1_555 C SG CYS 31 C CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 76 C CYS 119 1_555 C SG CYS 89 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 102 C CYS 218 1_555 C SG CYS 131 C CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 C SG CYS 112 C CYS 228 1_555 C SG CYS 123 C CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 C SG CYS 180 C CYS 296 1_555 C SG CYS 199 C CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 C SG CYS 246 C CYS 378 1_555 C SG CYS 313 C CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 C SG CYS 253 C CYS 385 1_555 C SG CYS 286 C CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 45 A ASN 88 1_555 I C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 118 A ASN 234 1_555 K C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 125 A ASN 241 1_555 M C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 146 A ASN 262 1_555 J C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 A ND2 ASN 160 A ASN 276 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 173 A ASN 289 1_555 L C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 A ND2 ASN 179 A ASN 295 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 A ND2 ASN 207 A ASN 339 1_555 G C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 A ND2 ASN 254 A ASN 386 1_555 H C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale10 C ND2 ASN 118 C ASN 234 1_555 P C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 C ND2 ASN 125 C ASN 241 1_555 Q C1 NAG . C NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 C ND2 ASN 146 C ASN 262 1_555 S C1 NAG . C NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 C ND2 ASN 160 C ASN 276 1_555 U C1 NAG . C NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 C ND2 ASN 173 C ASN 289 1_555 V C1 NAG . C NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 C ND2 ASN 179 C ASN 295 1_555 N C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 C ND2 ASN 207 C ASN 339 1_555 O C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 C ND2 ASN 254 C ASN 386 1_555 T C1 NAG . C NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 C ND2 ASN 316 C ASN 448 1_555 R C1 NAG . C NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7R74 _atom_sites.fract_transf_matrix[1][1] 0.008259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002864 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 501 763 NAG NAG . F 3 NAG A 1 502 764 NAG NAG . G 3 NAG A 1 503 765 NAG NAG . H 3 NAG A 1 504 766 NAG NAG . I 3 NAG A 1 505 767 NAG NAG . J 3 NAG A 1 506 768 NAG NAG . K 3 NAG A 1 507 769 NAG NAG . L 3 NAG A 1 508 770 NAG NAG . M 3 NAG A 1 509 771 NAG NAG . N 3 NAG C 1 501 739 NAG NAG . O 3 NAG C 1 502 740 NAG NAG . P 3 NAG C 1 503 741 NAG NAG . Q 3 NAG C 1 504 742 NAG NAG . R 3 NAG C 1 505 744 NAG NAG . S 3 NAG C 1 506 745 NAG NAG . T 3 NAG C 1 507 746 NAG NAG . U 3 NAG C 1 508 747 NAG NAG . V 3 NAG C 1 509 748 NAG NAG . W 4 HOH A 1 601 68 HOH HOH . W 4 HOH A 2 602 69 HOH HOH . W 4 HOH A 3 603 5 HOH HOH . W 4 HOH A 4 604 24 HOH HOH . W 4 HOH A 5 605 35 HOH HOH . W 4 HOH A 6 606 66 HOH HOH . W 4 HOH A 7 607 38 HOH HOH . W 4 HOH A 8 608 23 HOH HOH . W 4 HOH A 9 609 37 HOH HOH . W 4 HOH A 10 610 67 HOH HOH . W 4 HOH A 11 611 1 HOH HOH . W 4 HOH A 12 612 10 HOH HOH . W 4 HOH A 13 613 45 HOH HOH . W 4 HOH A 14 614 59 HOH HOH . W 4 HOH A 15 615 20 HOH HOH . W 4 HOH A 16 616 15 HOH HOH . W 4 HOH A 17 617 51 HOH HOH . W 4 HOH A 18 618 72 HOH HOH . W 4 HOH A 19 619 28 HOH HOH . W 4 HOH A 20 620 46 HOH HOH . W 4 HOH A 21 621 61 HOH HOH . W 4 HOH A 22 622 25 HOH HOH . W 4 HOH A 23 623 27 HOH HOH . W 4 HOH A 24 624 77 HOH HOH . W 4 HOH A 25 625 73 HOH HOH . W 4 HOH A 26 626 42 HOH HOH . W 4 HOH A 27 627 80 HOH HOH . W 4 HOH A 28 628 65 HOH HOH . W 4 HOH A 29 629 75 HOH HOH . W 4 HOH A 30 630 53 HOH HOH . X 4 HOH B 1 201 57 HOH HOH . X 4 HOH B 2 202 74 HOH HOH . X 4 HOH B 3 203 49 HOH HOH . X 4 HOH B 4 204 17 HOH HOH . X 4 HOH B 5 205 19 HOH HOH . X 4 HOH B 6 206 7 HOH HOH . X 4 HOH B 7 207 9 HOH HOH . X 4 HOH B 8 208 26 HOH HOH . X 4 HOH B 9 209 13 HOH HOH . X 4 HOH B 10 210 41 HOH HOH . X 4 HOH B 11 211 6 HOH HOH . X 4 HOH B 12 212 8 HOH HOH . X 4 HOH B 13 213 40 HOH HOH . X 4 HOH B 14 214 58 HOH HOH . X 4 HOH B 15 215 39 HOH HOH . X 4 HOH B 16 216 50 HOH HOH . X 4 HOH B 17 217 79 HOH HOH . Y 4 HOH C 1 601 34 HOH HOH . Y 4 HOH C 2 602 14 HOH HOH . Y 4 HOH C 3 603 60 HOH HOH . Y 4 HOH C 4 604 76 HOH HOH . Y 4 HOH C 5 605 71 HOH HOH . Y 4 HOH C 6 606 12 HOH HOH . Y 4 HOH C 7 607 47 HOH HOH . Y 4 HOH C 8 608 54 HOH HOH . Y 4 HOH C 9 609 3 HOH HOH . Y 4 HOH C 10 610 52 HOH HOH . Y 4 HOH C 11 611 81 HOH HOH . Y 4 HOH C 12 612 63 HOH HOH . Y 4 HOH C 13 613 22 HOH HOH . Y 4 HOH C 14 614 70 HOH HOH . Y 4 HOH C 15 615 2 HOH HOH . Y 4 HOH C 16 616 21 HOH HOH . Y 4 HOH C 17 617 44 HOH HOH . Y 4 HOH C 18 618 56 HOH HOH . Y 4 HOH C 19 619 29 HOH HOH . Y 4 HOH C 20 620 18 HOH HOH . Y 4 HOH C 21 621 16 HOH HOH . Z 4 HOH D 1 201 64 HOH HOH . Z 4 HOH D 2 202 31 HOH HOH . Z 4 HOH D 3 203 48 HOH HOH . Z 4 HOH D 4 204 36 HOH HOH . Z 4 HOH D 5 205 43 HOH HOH . Z 4 HOH D 6 206 30 HOH HOH . Z 4 HOH D 7 207 11 HOH HOH . Z 4 HOH D 8 208 4 HOH HOH . Z 4 HOH D 9 209 55 HOH HOH . Z 4 HOH D 10 210 32 HOH HOH . Z 4 HOH D 11 211 78 HOH HOH . Z 4 HOH D 12 212 62 HOH HOH . Z 4 HOH D 13 213 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 3 0.133 -56.68 13.587 1 70.43 ? C1 NAG 507 A 1 HETATM 2 C C2 NAG . . . K 3 -0.514 -58.028 13.282 1 74.41 ? C2 NAG 507 A 1 HETATM 3 C C3 NAG . . . K 3 0.355 -59.158 13.828 1 74.71 ? C3 NAG 507 A 1 HETATM 4 C C4 NAG . . . K 3 1.781 -59.032 13.307 1 79.14 ? C4 NAG 507 A 1 HETATM 5 C C5 NAG . . . K 3 2.33 -57.633 13.577 1 80.71 ? C5 NAG 507 A 1 HETATM 6 C C6 NAG . . . K 3 3.689 -57.401 12.958 1 84.96 ? C6 NAG 507 A 1 HETATM 7 C C7 NAG . . . K 3 -2.908 -58.588 13.165 1 86.12 ? C7 NAG 507 A 1 HETATM 8 C C8 NAG . . . K 3 -2.636 -59.066 11.768 1 83.08 ? C8 NAG 507 A 1 HETATM 9 N N2 NAG . . . K 3 -1.857 -58.102 13.837 1 83.96 ? N2 NAG 507 A 1 HETATM 10 O O3 NAG . . . K 3 -0.196 -60.413 13.444 1 83.08 ? O3 NAG 507 A 1 HETATM 11 O O4 NAG . . . K 3 2.614 -59.991 13.948 1 77.2 ? O4 NAG 507 A 1 HETATM 12 O O5 NAG . . . K 3 1.449 -56.642 13.026 1 82.75 ? O5 NAG 507 A 1 HETATM 13 O O6 NAG . . . K 3 3.914 -58.27 11.856 1 77.03 ? O6 NAG 507 A 1 HETATM 14 O O7 NAG . . . K 3 -4.029 -58.637 13.662 1 77.58 ? O7 NAG 507 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 14 #