data_7R85 # _model_server_result.job_id SA27eSRNzeu_FcMXaZPuqg _model_server_result.datetime_utc '2024-11-05 12:23:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7R85 # _exptl.entry_id 7R85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R85 _cell.length_a 43.915 _cell.length_b 43.915 _cell.length_c 64.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 FUC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B FUC 1 B 1 FUC A 101 FUC 2 n B BGC 2 B 2 BGC A 102 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 13 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf2 A SG CYS 17 A CYS 17 1_555 A SG CYS 53 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A CD1 TRP 7 A TRP 7 1_555 C C1 MAN . A MAN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale2 A CD1 TRP 10 A TRP 10 1_555 D C1 MAN . A MAN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale3 A OG1 THR 16 A THR 16 1_555 B C1 FUC . B FUC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale4 B O3 FUC . B FUC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 265 n n C1 O1 MAN sing 266 n n C1 O5 MAN sing 267 n n C1 H1 MAN sing 268 n n C2 C3 MAN sing 269 n n C2 O2 MAN sing 270 n n C2 H2 MAN sing 271 n n C3 C4 MAN sing 272 n n C3 O3 MAN sing 273 n n C3 H3 MAN sing 274 n n C4 C5 MAN sing 275 n n C4 O4 MAN sing 276 n n C4 H4 MAN sing 277 n n C5 C6 MAN sing 278 n n C5 O5 MAN sing 279 n n C5 H5 MAN sing 280 n n C6 O6 MAN sing 281 n n C6 H61 MAN sing 282 n n C6 H62 MAN sing 283 n n O1 HO1 MAN sing 284 n n O2 HO2 MAN sing 285 n n O3 HO3 MAN sing 286 n n O4 HO4 MAN sing 287 n n O6 HO6 MAN sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7R85 _atom_sites.fract_transf_matrix[1][1] 0.022771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN A 1 201 201 MAN MAN . D 3 MAN A 1 202 301 MAN MAN . E 4 HOH A 1 301 11 HOH HOH . E 4 HOH A 2 302 3 HOH HOH . E 4 HOH A 3 303 36 HOH HOH . E 4 HOH A 4 304 6 HOH HOH . E 4 HOH A 5 305 46 HOH HOH . E 4 HOH A 6 306 33 HOH HOH . E 4 HOH A 7 307 2 HOH HOH . E 4 HOH A 8 308 19 HOH HOH . E 4 HOH A 9 309 14 HOH HOH . E 4 HOH A 10 310 18 HOH HOH . E 4 HOH A 11 311 21 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 10 HOH HOH . E 4 HOH A 14 314 15 HOH HOH . E 4 HOH A 15 315 42 HOH HOH . E 4 HOH A 16 316 7 HOH HOH . E 4 HOH A 17 317 35 HOH HOH . E 4 HOH A 18 318 5 HOH HOH . E 4 HOH A 19 319 16 HOH HOH . E 4 HOH A 20 320 40 HOH HOH . E 4 HOH A 21 321 13 HOH HOH . E 4 HOH A 22 322 23 HOH HOH . E 4 HOH A 23 323 39 HOH HOH . E 4 HOH A 24 324 26 HOH HOH . E 4 HOH A 25 325 4 HOH HOH . E 4 HOH A 26 326 43 HOH HOH . E 4 HOH A 27 327 29 HOH HOH . E 4 HOH A 28 328 9 HOH HOH . E 4 HOH A 29 329 32 HOH HOH . E 4 HOH A 30 330 41 HOH HOH . E 4 HOH A 31 331 1 HOH HOH . E 4 HOH A 32 332 34 HOH HOH . E 4 HOH A 33 333 22 HOH HOH . E 4 HOH A 34 334 8 HOH HOH . E 4 HOH A 35 335 30 HOH HOH . E 4 HOH A 36 336 44 HOH HOH . E 4 HOH A 37 337 20 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 37 HOH HOH . E 4 HOH A 40 340 45 HOH HOH . E 4 HOH A 41 341 27 HOH HOH . E 4 HOH A 42 342 17 HOH HOH . E 4 HOH A 43 343 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 3 -5.334 11.7 -9.26 1 50.64 ? C1 MAN 202 A 1 HETATM 2 C C2 MAN . . . D 3 -4.379 12.427 -10.177 1 57.6 ? C2 MAN 202 A 1 HETATM 3 C C3 MAN . . . D 3 -5.105 12.836 -11.481 1 63.16 ? C3 MAN 202 A 1 HETATM 4 C C4 MAN . . . D 3 -6.65 12.887 -11.29 1 64.62 ? C4 MAN 202 A 1 HETATM 5 C C5 MAN . . . D 3 -6.999 13.357 -9.848 1 62.61 ? C5 MAN 202 A 1 HETATM 6 C C6 MAN . . . D 3 -8.468 13.562 -9.613 1 65.76 ? C6 MAN 202 A 1 HETATM 7 O O2 MAN . . . D 3 -3.435 11.559 -10.609 1 56.64 ? O2 MAN 202 A 1 HETATM 8 O O3 MAN . . . D 3 -4.741 11.953 -12.57 1 66.22 ? O3 MAN 202 A 1 HETATM 9 O O4 MAN . . . D 3 -7.245 13.763 -12.262 1 68.49 ? O4 MAN 202 A 1 HETATM 10 O O5 MAN . . . D 3 -6.57 12.327 -8.909 1 58.7 ? O5 MAN 202 A 1 HETATM 11 O O6 MAN . . . D 3 -9.177 12.723 -10.515 1 67.81 ? O6 MAN 202 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #