data_7R8E # _model_server_result.job_id 79hEebpn0ARHJmD9grcxYw _model_server_result.datetime_utc '2024-10-18 16:22:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r8e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 7R8E # _exptl.entry_id 7R8E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R8E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R8E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 611 A CYS 611 1_555 A SG CYS 617 A CYS 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 611 B CYS 611 1_555 B SG CYS 617 B CYS 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc1 A OG SER 125 A SER 125 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc2 A OE1 GLN 242 A GLN 242 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc3 C O2G ATP . A ATP 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc4 B OG SER 125 B SER 125 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 B OE1 GLN 242 B GLN 242 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc6 F O2G ATP . B ATP 701 1_555 G MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7R8E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 701 ATP ATP . D 3 MG A 1 702 702 MG MG . E 4 CLR A 1 703 703 CLR CLR . F 2 ATP B 1 701 701 ATP ATP . G 3 MG B 1 702 702 MG MG . H 4 CLR B 1 703 703 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 2 105.488 96.6 140.881 1 161.41 ? PG ATP 701 B 1 HETATM 2 O O1G ATP . . . F 2 106.916 97.046 141.084 1 160.8 ? O1G ATP 701 B 1 HETATM 3 O O2G ATP . . . F 2 104.649 97.548 140.058 1 160.77 ? O2G ATP 701 B 1 HETATM 4 O O3G ATP . . . F 2 104.809 96.094 142.132 1 161.32 ? O3G ATP 701 B 1 HETATM 5 P PB ATP . . . F 2 104.308 94.609 139.313 1 157.33 ? PB ATP 701 B 1 HETATM 6 O O1B ATP . . . F 2 103.481 94.031 140.436 1 156.87 ? O1B ATP 701 B 1 HETATM 7 O O2B ATP . . . F 2 103.688 95.591 138.348 1 156.54 ? O2B ATP 701 B 1 HETATM 8 O O3B ATP . . . F 2 105.619 95.291 139.953 1 159.34 ? O3B ATP 701 B 1 HETATM 9 P PA ATP . . . F 2 104.093 92.732 137.252 1 156.88 ? PA ATP 701 B 1 HETATM 10 O O1A ATP . . . F 2 104.269 93.602 136.031 1 156.39 ? O1A ATP 701 B 1 HETATM 11 O O2A ATP . . . F 2 102.706 92.41 137.754 1 157.24 ? O2A ATP 701 B 1 HETATM 12 O O3A ATP . . . F 2 104.927 93.389 138.464 1 156.98 ? O3A ATP 701 B 1 HETATM 13 O O5' ATP . . . F 2 104.872 91.346 137.001 1 154.29 ? O5' ATP 701 B 1 HETATM 14 C C5' ATP . . . F 2 105.231 90.508 138.098 1 150.47 ? C5' ATP 701 B 1 HETATM 15 C C4' ATP . . . F 2 106.601 89.894 137.84 1 147.49 ? C4' ATP 701 B 1 HETATM 16 O O4' ATP . . . F 2 106.571 89.136 136.628 1 145.36 ? O4' ATP 701 B 1 HETATM 17 C C3' ATP . . . F 2 107.668 90.97 137.692 1 146.04 ? C3' ATP 701 B 1 HETATM 18 O O3' ATP . . . F 2 108.639 90.832 138.737 1 146.25 ? O3' ATP 701 B 1 HETATM 19 C C2' ATP . . . F 2 108.265 90.785 136.303 1 144.44 ? C2' ATP 701 B 1 HETATM 20 O O2' ATP . . . F 2 109.68 90.553 136.333 1 143.53 ? O2' ATP 701 B 1 HETATM 21 C C1' ATP . . . F 2 107.559 89.582 135.695 1 143.21 ? C1' ATP 701 B 1 HETATM 22 N N9 ATP . . . F 2 106.91 89.973 134.417 1 140.82 ? N9 ATP 701 B 1 HETATM 23 C C8 ATP . . . F 2 106.216 91.107 134.202 1 139.79 ? C8 ATP 701 B 1 HETATM 24 N N7 ATP . . . F 2 105.751 91.162 132.927 1 139.34 ? N7 ATP 701 B 1 HETATM 25 C C5 ATP . . . F 2 106.151 90.04 132.303 1 139.24 ? C5 ATP 701 B 1 HETATM 26 C C6 ATP . . . F 2 106.004 89.463 130.945 1 139.01 ? C6 ATP 701 B 1 HETATM 27 N N6 ATP . . . F 2 105.317 90.116 129.977 1 138.99 ? N6 ATP 701 B 1 HETATM 28 N N1 ATP . . . F 2 106.579 88.264 130.706 1 139.44 ? N1 ATP 701 B 1 HETATM 29 C C2 ATP . . . F 2 107.264 87.604 131.66 1 140.08 ? C2 ATP 701 B 1 HETATM 30 N N3 ATP . . . F 2 107.437 88.069 132.911 1 139.97 ? N3 ATP 701 B 1 HETATM 31 C C4 ATP . . . F 2 106.914 89.259 133.288 1 139.84 ? C4 ATP 701 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #