data_7R8R # _model_server_result.job_id 4USddI5gChoApOxSbKZWCw _model_server_result.datetime_utc '2024-11-08 20:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7R8R # _exptl.entry_id 7R8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.649 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Physachenolide C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R8R _cell.length_a 44.098 _cell.length_b 49.316 _cell.length_c 60.779 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 O9' _chem_comp.formula_weight 546.649 _chem_comp.id 8L6 _chem_comp.mon_nstd_flag . _chem_comp.name 'Physachenolide C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C24 8L6 doub 1 n n C25 C24 8L6 sing 2 n n C24 O5 8L6 sing 3 n n O5 C23 8L6 sing 4 n n C18 C17 8L6 sing 5 n n C7 C6 8L6 sing 6 n n C23 C22 8L6 sing 7 n n O7 C16 8L6 sing 8 n n O7 C15 8L6 sing 9 n n C17 C16 8L6 sing 10 n n C17 C29 8L6 sing 11 n n C17 C19 8L6 sing 12 n n C16 C26 8L6 sing 13 n n C16 C15 8L6 sing 14 n n C28 C29 8L6 sing 15 n n C28 C27 8L6 sing 16 n n C29 O8 8L6 doub 17 n n C26 C27 8L6 sing 18 n n O3 C9 8L6 sing 19 n n C6 C8 8L6 sing 20 n n C6 C4 8L6 doub 21 n n C20 C21 8L6 sing 22 n n C20 C19 8L6 sing 23 n n C22 C21 8L6 sing 24 n n C22 C9 8L6 sing 25 n n C22 C12 8L6 sing 26 n n C8 C2 8L6 sing 27 n n C19 C13 8L6 sing 28 n n C13 C14 8L6 sing 29 n n C13 C12 8L6 sing 30 n n C15 C14 8L6 sing 31 n n C5 C4 8L6 sing 32 n n C9 C10 8L6 sing 33 n n C9 C1 8L6 sing 34 n n C4 C3 8L6 sing 35 n n C12 C11 8L6 sing 36 n n C12 O4 8L6 sing 37 n n C10 C11 8L6 sing 38 n n C2 C1 8L6 sing 39 n n C2 O 8L6 sing 40 n n C1 O2 8L6 sing 41 n n C1 C 8L6 sing 42 n n C3 O 8L6 sing 43 n n C3 O1 8L6 doub 44 n n C H1 8L6 sing 45 n n C H3 8L6 sing 46 n n C H2 8L6 sing 47 n n C10 H5 8L6 sing 48 n n C10 H4 8L6 sing 49 n n C11 H7 8L6 sing 50 n n C11 H6 8L6 sing 51 n n C13 H8 8L6 sing 52 n n C14 H9 8L6 sing 53 n n C14 H10 8L6 sing 54 n n C15 H11 8L6 sing 55 n n C18 H12 8L6 sing 56 n n C18 H13 8L6 sing 57 n n C18 H14 8L6 sing 58 n n C19 H15 8L6 sing 59 n n C2 H16 8L6 sing 60 n n C20 H17 8L6 sing 61 n n C20 H18 8L6 sing 62 n n C21 H19 8L6 sing 63 n n C21 H20 8L6 sing 64 n n C23 H22 8L6 sing 65 n n C23 H21 8L6 sing 66 n n C25 H23 8L6 sing 67 n n C25 H25 8L6 sing 68 n n C25 H24 8L6 sing 69 n n C26 H27 8L6 sing 70 n n C26 H26 8L6 sing 71 n n C27 H28 8L6 sing 72 n n C27 H29 8L6 sing 73 n n C28 H30 8L6 sing 74 n n C28 H31 8L6 sing 75 n n C5 H33 8L6 sing 76 n n C5 H34 8L6 sing 77 n n C5 H35 8L6 sing 78 n n C7 H37 8L6 sing 79 n n C7 H38 8L6 sing 80 n n C7 H39 8L6 sing 81 n n C8 H40 8L6 sing 82 n n C8 H41 8L6 sing 83 n n O2 H42 8L6 sing 84 n n O3 H43 8L6 sing 85 n n O4 H44 8L6 sing 86 n n # _atom_sites.entry_id 7R8R _atom_sites.fract_transf_matrix[1][1] 0.022677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8L6 A 1 201 201 8L6 8L6 . C 3 HOH A 1 301 21 HOH HOH . C 3 HOH A 2 302 81 HOH HOH . C 3 HOH A 3 303 39 HOH HOH . C 3 HOH A 4 304 33 HOH HOH . C 3 HOH A 5 305 9 HOH HOH . C 3 HOH A 6 306 21 HOH HOH . C 3 HOH A 7 307 32 HOH HOH . C 3 HOH A 8 308 3 HOH HOH . C 3 HOH A 9 309 56 HOH HOH . C 3 HOH A 10 310 29 HOH HOH . C 3 HOH A 11 311 6 HOH HOH . C 3 HOH A 12 312 28 HOH HOH . C 3 HOH A 13 313 57 HOH HOH . C 3 HOH A 14 314 10 HOH HOH . C 3 HOH A 15 315 69 HOH HOH . C 3 HOH A 16 316 1 HOH HOH . C 3 HOH A 17 317 11 HOH HOH . C 3 HOH A 18 318 64 HOH HOH . C 3 HOH A 19 319 23 HOH HOH . C 3 HOH A 20 320 13 HOH HOH . C 3 HOH A 21 321 48 HOH HOH . C 3 HOH A 22 322 14 HOH HOH . C 3 HOH A 23 323 17 HOH HOH . C 3 HOH A 24 324 61 HOH HOH . C 3 HOH A 25 325 16 HOH HOH . C 3 HOH A 26 326 25 HOH HOH . C 3 HOH A 27 327 44 HOH HOH . C 3 HOH A 28 328 67 HOH HOH . C 3 HOH A 29 329 5 HOH HOH . C 3 HOH A 30 330 2 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 26 HOH HOH . C 3 HOH A 33 333 8 HOH HOH . C 3 HOH A 34 334 11 HOH HOH . C 3 HOH A 35 335 17 HOH HOH . C 3 HOH A 36 336 83 HOH HOH . C 3 HOH A 37 337 20 HOH HOH . C 3 HOH A 38 338 28 HOH HOH . C 3 HOH A 39 339 18 HOH HOH . C 3 HOH A 40 340 9 HOH HOH . C 3 HOH A 41 341 24 HOH HOH . C 3 HOH A 42 342 4 HOH HOH . C 3 HOH A 43 343 49 HOH HOH . C 3 HOH A 44 344 54 HOH HOH . C 3 HOH A 45 345 30 HOH HOH . C 3 HOH A 46 346 34 HOH HOH . C 3 HOH A 47 347 42 HOH HOH . C 3 HOH A 48 348 50 HOH HOH . C 3 HOH A 49 349 4 HOH HOH . C 3 HOH A 50 350 47 HOH HOH . C 3 HOH A 51 351 15 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 41 HOH HOH . C 3 HOH A 54 354 38 HOH HOH . C 3 HOH A 55 355 79 HOH HOH . C 3 HOH A 56 356 46 HOH HOH . C 3 HOH A 57 357 59 HOH HOH . C 3 HOH A 58 358 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 8L6 . . . B 2 -1.639 20.258 10.682 1 29.51 ? C 8L6 201 A 1 HETATM 2 O O 8L6 . . . B 2 1.111 20.729 10.202 1 31.5 ? O 8L6 201 A 1 HETATM 3 C C1 8L6 . . . B 2 -0.834 21.233 11.628 1 33.4 ? C1 8L6 201 A 1 HETATM 4 C C10 8L6 . . . B 2 -3.037 21.599 12.941 1 34.34 ? C10 8L6 201 A 1 HETATM 5 C C11 8L6 . . . B 2 -3.361 22.666 14.047 1 35.1 ? C11 8L6 201 A 1 HETATM 6 C C12 8L6 . . . B 2 -1.999 23.298 14.202 1 35.07 ? C12 8L6 201 A 1 HETATM 7 C C13 8L6 . . . B 2 -1.798 24.504 15.103 1 41.7 ? C13 8L6 201 A 1 HETATM 8 C C14 8L6 . . . B 2 -2.989 24.807 15.86 1 52.19 ? C14 8L6 201 A 1 HETATM 9 C C15 8L6 . . . B 2 -2.789 26.137 16.592 1 45.18 ? C15 8L6 201 A 1 HETATM 10 C C16 8L6 . . . B 2 -1.472 26.445 17.253 1 48.82 ? C16 8L6 201 A 1 HETATM 11 C C17 8L6 . . . B 2 -0.227 25.606 16.91 1 42.42 ? C17 8L6 201 A 1 HETATM 12 C C18 8L6 . . . B 2 0.108 24.574 17.987 1 47.84 ? C18 8L6 201 A 1 HETATM 13 C C19 8L6 . . . B 2 -0.366 24.781 15.567 1 39.97 ? C19 8L6 201 A 1 HETATM 14 C C2 8L6 . . . B 2 0.406 20.385 11.369 1 41.8 ? C2 8L6 201 A 1 HETATM 15 C C20 8L6 . . . B 2 0.675 23.682 15.296 1 40.49 ? C20 8L6 201 A 1 HETATM 16 C C21 8L6 . . . B 2 0.404 22.737 14.095 1 34.59 ? C21 8L6 201 A 1 HETATM 17 C C22 8L6 . . . B 2 -1.016 22.149 14.169 1 32.23 ? C22 8L6 201 A 1 HETATM 18 C C23 8L6 . . . B 2 -1.123 21.348 15.468 1 36.37 ? C23 8L6 201 A 1 HETATM 19 C C24 8L6 . . . B 2 0.709 20.293 16.804 1 46.83 ? C24 8L6 201 A 1 HETATM 20 C C25 8L6 . . . B 2 -0.07 20.708 17.943 1 38.65 ? C25 8L6 201 A 1 HETATM 21 C C26 8L6 . . . B 2 -1.397 27.643 18.206 1 46.93 ? C26 8L6 201 A 1 HETATM 22 C C27 8L6 . . . B 2 -0.361 28.637 17.774 1 49.5 ? C27 8L6 201 A 1 HETATM 23 C C28 8L6 . . . B 2 0.676 28.122 17.048 1 50.31 ? C28 8L6 201 A 1 HETATM 24 C C29 8L6 . . . B 2 0.859 26.661 16.76 1 56.55 ? C29 8L6 201 A 1 HETATM 25 C C3 8L6 . . . B 2 2.355 20.303 9.97 1 31.72 ? C3 8L6 201 A 1 HETATM 26 C C4 8L6 . . . B 2 3.152 19.839 11.083 1 34.66 ? C4 8L6 201 A 1 HETATM 27 C C5 8L6 . . . B 2 4.619 19.792 10.952 1 41.41 ? C5 8L6 201 A 1 HETATM 28 C C6 8L6 . . . B 2 2.567 19.402 12.198 1 35.21 ? C6 8L6 201 A 1 HETATM 29 C C7 8L6 . . . B 2 3.313 18.648 13.277 1 35.41 ? C7 8L6 201 A 1 HETATM 30 C C8 8L6 . . . B 2 1.141 19.726 12.505 1 33.28 ? C8 8L6 201 A 1 HETATM 31 C C9 8L6 . . . B 2 -1.541 21.218 13.035 1 35.42 ? C9 8L6 201 A 1 HETATM 32 O O1 8L6 . . . B 2 2.67 20.371 8.776 1 33.44 ? O1 8L6 201 A 1 HETATM 33 O O2 8L6 . . . B 2 -1 22.502 10.979 1 33.88 ? O2 8L6 201 A 1 HETATM 34 O O3 8L6 . . . B 2 -1.555 19.826 13.527 1 35.16 ? O3 8L6 201 A 1 HETATM 35 O O4 8L6 . . . B 2 -1.745 24.097 13.026 1 33.69 ? O4 8L6 201 A 1 HETATM 36 O O5 8L6 . . . B 2 0.094 20.643 15.537 1 39.51 ? O5 8L6 201 A 1 HETATM 37 O O6 8L6 . . . B 2 1.801 19.725 16.901 1 51.39 ? O6 8L6 201 A 1 HETATM 38 O O7 8L6 . . . B 2 -2.44 25.572 17.841 1 46.77 ? O7 8L6 201 A 1 HETATM 39 O O8 8L6 . . . B 2 1.991 26.259 16.502 1 56.45 ? O8 8L6 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #