data_7R8V # _model_server_result.job_id xLQMHSA66yLUUpCUo88wUQ _model_server_result.datetime_utc '2024-12-19 03:52:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7R8V # _exptl.entry_id 7R8V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R8V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 68 B GLU 72 1_555 A N HIC 69 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C HIC 69 B HIC 73 1_555 A N GLY 70 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C GLU 68 A GLU 72 1_555 B N HIC 69 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C HIC 69 A HIC 73 1_555 B N GLY 70 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C GLU 68 C GLU 72 1_555 C N HIC 69 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C HIC 69 C HIC 73 1_555 C N GLY 70 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C GLU 68 D GLU 72 1_555 D N HIC 69 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C HIC 69 D HIC 73 1_555 D N GLY 70 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C GLU 68 E GLU 72 1_555 E N HIC 69 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 E C HIC 69 E HIC 73 1_555 E N GLY 70 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 F O3B ADP . B ADP 401 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 H O3B ADP . A ADP 401 1_555 I MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 J O3B ADP . C ADP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 L O3B ADP . D ADP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc5 N O3B ADP . E ADP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7R8V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ADP B 1 401 376 ADP ADP . G 3 MG B 1 402 377 MG MG . H 2 ADP A 1 401 376 ADP ADP . I 3 MG A 1 402 377 MG MG . J 2 ADP C 1 401 376 ADP ADP . K 3 MG C 1 402 377 MG MG . L 2 ADP D 1 401 376 ADP ADP . M 3 MG D 1 402 377 MG MG . N 2 ADP E 1 401 376 ADP ADP . O 3 MG E 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 2 278.738 256.278 255.302 1 27.82 ? PB ADP 401 B 1 HETATM 2 O O1B ADP . . . F 2 279.311 255.443 254.188 1 27.82 ? O1B ADP 401 B 1 HETATM 3 O O2B ADP . . . F 2 277.234 256.264 255.377 1 27.82 ? O2B ADP 401 B 1 HETATM 4 O O3B ADP . . . F 2 279.429 256.122 256.635 1 27.82 ? O3B ADP 401 B 1 HETATM 5 P PA ADP . . . F 2 280.552 258.308 254.56 1 27.82 ? PA ADP 401 B 1 HETATM 6 O O1A ADP . . . F 2 281.188 257.386 253.553 1 27.82 ? O1A ADP 401 B 1 HETATM 7 O O2A ADP . . . F 2 281.236 258.617 255.866 1 27.82 ? O2A ADP 401 B 1 HETATM 8 O O3A ADP . . . F 2 279.061 257.784 254.856 1 27.82 ? O3A ADP 401 B 1 HETATM 9 O O5' ADP . . . F 2 280.189 259.685 253.825 1 27.82 ? O5' ADP 401 B 1 HETATM 10 C C5' ADP . . . F 2 280.142 259.74 252.406 1 27.82 ? C5' ADP 401 B 1 HETATM 11 C C4' ADP . . . F 2 279.286 260.932 252.01 1 27.82 ? C4' ADP 401 B 1 HETATM 12 O O4' ADP . . . F 2 279.944 262.131 252.411 1 27.82 ? O4' ADP 401 B 1 HETATM 13 C C3' ADP . . . F 2 279.08 260.996 250.509 1 27.82 ? C3' ADP 401 B 1 HETATM 14 O O3' ADP . . . F 2 277.682 260.924 250.224 1 27.82 ? O3' ADP 401 B 1 HETATM 15 C C2' ADP . . . F 2 279.61 262.342 250.07 1 27.82 ? C2' ADP 401 B 1 HETATM 16 O O2' ADP . . . F 2 278.584 263.048 249.371 1 27.82 ? O2' ADP 401 B 1 HETATM 17 C C1' ADP . . . F 2 279.983 263.076 251.346 1 27.82 ? C1' ADP 401 B 1 HETATM 18 N N9 ADP . . . F 2 281.356 263.62 251.233 1 27.82 ? N9 ADP 401 B 1 HETATM 19 C C8 ADP . . . F 2 282.477 262.891 251.099 1 27.82 ? C8 ADP 401 B 1 HETATM 20 N N7 ADP . . . F 2 283.57 263.689 251.018 1 27.82 ? N7 ADP 401 B 1 HETATM 21 C C5 ADP . . . F 2 283.146 264.962 251.1 1 27.82 ? C5 ADP 401 B 1 HETATM 22 C C6 ADP . . . F 2 283.776 266.3 251.082 1 27.82 ? C6 ADP 401 B 1 HETATM 23 N N6 ADP . . . F 2 285.116 266.44 250.956 1 27.82 ? N6 ADP 401 B 1 HETATM 24 N N1 ADP . . . F 2 282.971 267.375 251.195 1 27.82 ? N1 ADP 401 B 1 HETATM 25 C C2 ADP . . . F 2 281.638 267.25 251.321 1 27.82 ? C2 ADP 401 B 1 HETATM 26 N N3 ADP . . . F 2 280.999 266.07 251.344 1 27.82 ? N3 ADP 401 B 1 HETATM 27 C C4 ADP . . . F 2 281.685 264.91 251.239 1 27.82 ? C4 ADP 401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #