data_7R8Y # _model_server_result.job_id vCza8EfcJm5tHwVZkt2pJg _model_server_result.datetime_utc '2024-10-10 03:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7r8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7R8Y # _exptl.entry_id 7R8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.155 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7R8Y _cell.length_a 113.316 _cell.length_b 113.316 _cell.length_c 112.233 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7R8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H9 N3 O' _chem_comp.formula_weight 139.155 _chem_comp.id HMH _chem_comp.mon_nstd_flag . _chem_comp.name 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A HMH sing 150 n n CM2 HCM1 HMH sing 151 n n CM2 HCM2 HMH sing 152 n n CM2 HCM3 HMH sing 153 n n N1A C2A HMH doub 154 n y N1A C6A HMH sing 155 n y C2A N3A HMH sing 156 n y N3A C4A HMH doub 157 n y C4A N4A HMH sing 158 n n C4A C5A HMH sing 159 n y N4A HN41 HMH sing 160 n n N4A HN42 HMH sing 161 n n C5A C6A HMH doub 162 n y C5A C7A HMH sing 163 n n C6A HC6 HMH sing 164 n n C7A O1 HMH sing 165 n n C7A HC71 HMH sing 166 n n C7A HC72 HMH sing 167 n n O1 HO1 HMH sing 168 n n # _atom_sites.entry_id 7R8Y _atom_sites.fract_transf_matrix[1][1] 0.008825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HMH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id HMH _pdbx_nonpoly_scheme.auth_mon_id HMH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 HMH . . . C 2 25.199 -10.938 37.136 0.81 65.11 ? CM2 HMH 301 A 1 HETATM 2 N N1A HMH . . . C 2 25.029 -9.694 39.274 0.81 78.76 ? N1A HMH 301 A 1 HETATM 3 C C2A HMH . . . C 2 25.737 -10.506 38.511 0.81 69.41 ? C2A HMH 301 A 1 HETATM 4 N N3A HMH . . . C 2 26.963 -10.968 38.948 0.81 64.33 ? N3A HMH 301 A 1 HETATM 5 C C4A HMH . . . C 2 27.429 -10.585 40.159 0.81 70.8 ? C4A HMH 301 A 1 HETATM 6 N N4A HMH . . . C 2 28.664 -11.051 40.615 0.81 77.15 ? N4A HMH 301 A 1 HETATM 7 C C5A HMH . . . C 2 26.731 -9.774 40.928 0.81 75.12 ? C5A HMH 301 A 1 HETATM 8 C C6A HMH . . . C 2 25.497 -9.312 40.485 0.81 79.32 ? C6A HMH 301 A 1 HETATM 9 C C7A HMH . . . C 2 27.269 -9.376 42.263 0.81 70.7 ? C7A HMH 301 A 1 HETATM 10 O O1 HMH . . . C 2 27.089 -7.997 42.506 0.81 63.1 ? O1 HMH 301 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #