data_7RAD # _model_server_result.job_id e3ax4aHakGPcLojvBeJDbA _model_server_result.datetime_utc '2024-12-23 07:37:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":602}' # _entry.id 7RAD # _exptl.entry_id 7RAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.504 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2-methoxyphenyl)-1-(4-phenylphenyl)-6,7,8,9-tetrahydro-5~{H}-imidazo[1,2-a][1,3]diazepine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7RAD _cell.length_a 101.127 _cell.length_b 101.127 _cell.length_c 185.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 61.84 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 32 A THR 39 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A O VAL 33 A VAL 40 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc3 A O ASP 102 A ASP 109 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 A OD1 ASP 102 A ASP 109 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 A O GLN 189 A GLN 196 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 E NA NA . A NA 603 1_555 Q O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc7 B OG1 THR 32 B THR 39 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc8 B O VAL 33 B VAL 40 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc9 B O ASP 102 B ASP 109 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc10 B OD1 ASP 102 B ASP 109 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc11 B O GLN 189 B GLN 196 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc12 L NA NA . B NA 603 1_555 R O HOH . B HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? # _chem_comp.formula 'C26 H26 N3 O 1' _chem_comp.formula_weight 396.504 _chem_comp.id ZGJ _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2-methoxyphenyl)-1-(4-phenylphenyl)-6,7,8,9-tetrahydro-5~{H}-imidazo[1,2-a][1,3]diazepine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 ZGJ doub 460 n y C21 C22 ZGJ sing 461 n y C20 C19 ZGJ sing 462 n y C22 C23 ZGJ doub 463 n y C19 C18 ZGJ doub 464 n y C23 C18 ZGJ sing 465 n y C18 C15 ZGJ sing 466 n n C14 C15 ZGJ doub 467 n y C14 C13 ZGJ sing 468 n y C15 C16 ZGJ sing 469 n y C13 C12 ZGJ doub 470 n y C16 C17 ZGJ doub 471 n y C12 C17 ZGJ sing 472 n y C12 N2 ZGJ sing 473 n n C8 C7 ZGJ doub 474 n y C8 C9 ZGJ sing 475 n y C1 N2 ZGJ sing 476 n y C1 C5 ZGJ doub 477 n y C7 C6 ZGJ sing 478 n y C9 C10 ZGJ doub 479 n y N2 C3 ZGJ doub 480 n y C6 C5 ZGJ sing 481 n n C6 C11 ZGJ doub 482 n y C10 C11 ZGJ sing 483 n y C5 N4 ZGJ sing 484 n y C11 O29 ZGJ sing 485 n n C30 O29 ZGJ sing 486 n n C3 N4 ZGJ sing 487 n y C3 N24 ZGJ sing 488 n n N4 C28 ZGJ sing 489 n n N24 C25 ZGJ sing 490 n n C28 C27 ZGJ sing 491 n n C25 C26 ZGJ sing 492 n n C26 C27 ZGJ sing 493 n n C30 H1 ZGJ sing 494 n n C30 H2 ZGJ sing 495 n n C30 H3 ZGJ sing 496 n n C10 H4 ZGJ sing 497 n n C9 H5 ZGJ sing 498 n n C8 H6 ZGJ sing 499 n n C7 H7 ZGJ sing 500 n n C1 H8 ZGJ sing 501 n n C28 H9 ZGJ sing 502 n n C28 H10 ZGJ sing 503 n n C27 H11 ZGJ sing 504 n n C27 H12 ZGJ sing 505 n n C26 H13 ZGJ sing 506 n n C26 H14 ZGJ sing 507 n n C25 H15 ZGJ sing 508 n n C25 H16 ZGJ sing 509 n n N24 H17 ZGJ sing 510 n n C17 H18 ZGJ sing 511 n n C16 H19 ZGJ sing 512 n n C14 H20 ZGJ sing 513 n n C13 H21 ZGJ sing 514 n n C23 H22 ZGJ sing 515 n n C22 H23 ZGJ sing 516 n n C21 H24 ZGJ sing 517 n n C20 H25 ZGJ sing 518 n n C19 H26 ZGJ sing 519 n n # _atom_sites.entry_id 7RAD _atom_sites.fract_transf_matrix[1][1] 0.009889 _atom_sites.fract_transf_matrix[1][2] 0.005709 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 4 NAD ZRF . D 3 ZGJ A 1 602 1 ZGJ dcz . E 4 NA A 1 603 1 NA NA . F 5 EDO A 1 604 2 EDO EDO . G 5 EDO A 1 605 4 EDO EDO . H 5 EDO A 1 606 5 EDO EDO . I 5 EDO A 1 607 6 EDO EDO . J 2 NAD B 1 601 3 NAD ZRF . K 3 ZGJ B 1 602 2 ZGJ dcz . L 4 NA B 1 603 2 NA NA . M 5 EDO B 1 604 1 EDO EDO . N 5 EDO B 1 605 3 EDO EDO . O 5 EDO B 1 606 7 EDO EDO . P 5 EDO B 1 607 8 EDO EDO . Q 6 HOH A 1 701 14 HOH HOH . Q 6 HOH A 2 702 13 HOH HOH . Q 6 HOH A 3 703 50 HOH HOH . Q 6 HOH A 4 704 24 HOH HOH . Q 6 HOH A 5 705 16 HOH HOH . Q 6 HOH A 6 706 26 HOH HOH . Q 6 HOH A 7 707 75 HOH HOH . Q 6 HOH A 8 708 23 HOH HOH . Q 6 HOH A 9 709 21 HOH HOH . Q 6 HOH A 10 710 57 HOH HOH . Q 6 HOH A 11 711 39 HOH HOH . Q 6 HOH A 12 712 70 HOH HOH . Q 6 HOH A 13 713 71 HOH HOH . Q 6 HOH A 14 714 51 HOH HOH . Q 6 HOH A 15 715 48 HOH HOH . Q 6 HOH A 16 716 66 HOH HOH . Q 6 HOH A 17 717 52 HOH HOH . Q 6 HOH A 18 718 6 HOH HOH . Q 6 HOH A 19 719 30 HOH HOH . Q 6 HOH A 20 720 12 HOH HOH . Q 6 HOH A 21 721 65 HOH HOH . Q 6 HOH A 22 722 63 HOH HOH . Q 6 HOH A 23 723 87 HOH HOH . Q 6 HOH A 24 724 53 HOH HOH . Q 6 HOH A 25 725 86 HOH HOH . Q 6 HOH A 26 726 27 HOH HOH . Q 6 HOH A 27 727 68 HOH HOH . Q 6 HOH A 28 728 90 HOH HOH . Q 6 HOH A 29 729 10 HOH HOH . Q 6 HOH A 30 730 5 HOH HOH . Q 6 HOH A 31 731 31 HOH HOH . Q 6 HOH A 32 732 74 HOH HOH . Q 6 HOH A 33 733 83 HOH HOH . Q 6 HOH A 34 734 29 HOH HOH . Q 6 HOH A 35 735 28 HOH HOH . Q 6 HOH A 36 736 77 HOH HOH . Q 6 HOH A 37 737 72 HOH HOH . Q 6 HOH A 38 738 9 HOH HOH . Q 6 HOH A 39 739 73 HOH HOH . Q 6 HOH A 40 740 20 HOH HOH . Q 6 HOH A 41 741 49 HOH HOH . Q 6 HOH A 42 742 8 HOH HOH . Q 6 HOH A 43 743 93 HOH HOH . Q 6 HOH A 44 744 7 HOH HOH . Q 6 HOH A 45 745 89 HOH HOH . Q 6 HOH A 46 746 94 HOH HOH . Q 6 HOH A 47 747 69 HOH HOH . Q 6 HOH A 48 748 42 HOH HOH . Q 6 HOH A 49 749 47 HOH HOH . Q 6 HOH A 50 750 91 HOH HOH . Q 6 HOH A 51 751 88 HOH HOH . Q 6 HOH A 52 752 54 HOH HOH . Q 6 HOH A 53 753 17 HOH HOH . Q 6 HOH A 54 754 25 HOH HOH . Q 6 HOH A 55 755 15 HOH HOH . Q 6 HOH A 56 756 32 HOH HOH . Q 6 HOH A 57 757 18 HOH HOH . Q 6 HOH A 58 758 64 HOH HOH . Q 6 HOH A 59 759 58 HOH HOH . Q 6 HOH A 60 760 19 HOH HOH . R 6 HOH B 1 701 55 HOH HOH . R 6 HOH B 2 702 40 HOH HOH . R 6 HOH B 3 703 76 HOH HOH . R 6 HOH B 4 704 1 HOH HOH . R 6 HOH B 5 705 81 HOH HOH . R 6 HOH B 6 706 60 HOH HOH . R 6 HOH B 7 707 41 HOH HOH . R 6 HOH B 8 708 2 HOH HOH . R 6 HOH B 9 709 36 HOH HOH . R 6 HOH B 10 710 95 HOH HOH . R 6 HOH B 11 711 59 HOH HOH . R 6 HOH B 12 712 38 HOH HOH . R 6 HOH B 13 713 56 HOH HOH . R 6 HOH B 14 714 84 HOH HOH . R 6 HOH B 15 715 45 HOH HOH . R 6 HOH B 16 716 85 HOH HOH . R 6 HOH B 17 717 33 HOH HOH . R 6 HOH B 18 718 11 HOH HOH . R 6 HOH B 19 719 61 HOH HOH . R 6 HOH B 20 720 3 HOH HOH . R 6 HOH B 21 721 34 HOH HOH . R 6 HOH B 22 722 67 HOH HOH . R 6 HOH B 23 723 62 HOH HOH . R 6 HOH B 24 724 78 HOH HOH . R 6 HOH B 25 725 37 HOH HOH . R 6 HOH B 26 726 4 HOH HOH . R 6 HOH B 27 727 80 HOH HOH . R 6 HOH B 28 728 79 HOH HOH . R 6 HOH B 29 729 35 HOH HOH . R 6 HOH B 30 730 92 HOH HOH . R 6 HOH B 31 731 46 HOH HOH . R 6 HOH B 32 732 44 HOH HOH . R 6 HOH B 33 733 82 HOH HOH . R 6 HOH B 34 734 43 HOH HOH . R 6 HOH B 35 735 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C30 ZGJ . . . K 3 7.118 -19.858 30.316 1 72.28 ? C30 ZGJ 602 B 1 HETATM 2 O O29 ZGJ . . . K 3 7.828 -20.979 30.866 1 72.43 ? O29 ZGJ 602 B 1 HETATM 3 C C11 ZGJ . . . K 3 9.042 -21.463 30.41 1 67.36 ? C11 ZGJ 602 B 1 HETATM 4 C C10 ZGJ . . . K 3 9.39 -21.412 29.048 1 65.09 ? C10 ZGJ 602 B 1 HETATM 5 C C9 ZGJ . . . K 3 10.61 -21.92 28.603 1 67.11 ? C9 ZGJ 602 B 1 HETATM 6 C C8 ZGJ . . . K 3 11.484 -22.498 29.521 1 66.94 ? C8 ZGJ 602 B 1 HETATM 7 C C7 ZGJ . . . K 3 11.141 -22.558 30.872 1 66.6 ? C7 ZGJ 602 B 1 HETATM 8 C C6 ZGJ . . . K 3 9.921 -22.053 31.329 1 67.67 ? C6 ZGJ 602 B 1 HETATM 9 C C5 ZGJ . . . K 3 9.595 -22.145 32.802 1 68.64 ? C5 ZGJ 602 B 1 HETATM 10 C C1 ZGJ . . . K 3 9.401 -23.345 33.508 1 67.24 ? C1 ZGJ 602 B 1 HETATM 11 N N4 ZGJ . . . K 3 9.452 -21.091 33.667 1 68.76 ? N4 ZGJ 602 B 1 HETATM 12 C C28 ZGJ . . . K 3 9.574 -19.681 33.272 1 67.14 ? C28 ZGJ 602 B 1 HETATM 13 C C27 ZGJ . . . K 3 9.894 -18.736 34.421 1 72.34 ? C27 ZGJ 602 B 1 HETATM 14 C C26 ZGJ . . . K 3 8.724 -18.632 35.383 1 74.38 ? C26 ZGJ 602 B 1 HETATM 15 C C25 ZGJ . . . K 3 8.89 -19.622 36.526 1 76.68 ? C25 ZGJ 602 B 1 HETATM 16 N N24 ZGJ . . . K 3 8.937 -21.021 36.075 1 72.87 ? N24 ZGJ 602 B 1 HETATM 17 C C3 ZGJ . . . K 3 9.171 -21.647 34.862 1 68.67 ? C3 ZGJ 602 B 1 HETATM 18 N N2 ZGJ . . . K 3 9.159 -22.989 34.767 1 69.1 ? N2 ZGJ 602 B 1 HETATM 19 C C12 ZGJ . . . K 3 8.9 -23.834 35.806 1 66.34 ? C12 ZGJ 602 B 1 HETATM 20 C C17 ZGJ . . . K 3 9.699 -23.906 36.96 1 67.2 ? C17 ZGJ 602 B 1 HETATM 21 C C16 ZGJ . . . K 3 9.437 -24.739 38.057 1 68 ? C16 ZGJ 602 B 1 HETATM 22 C C15 ZGJ . . . K 3 8.319 -25.572 38.059 1 74.12 ? C15 ZGJ 602 B 1 HETATM 23 C C14 ZGJ . . . K 3 7.501 -25.531 36.92 1 72.97 ? C14 ZGJ 602 B 1 HETATM 24 C C13 ZGJ . . . K 3 7.792 -24.685 35.844 1 70.47 ? C13 ZGJ 602 B 1 HETATM 25 C C18 ZGJ . . . K 3 7.994 -26.48 39.22 1 76.38 ? C18 ZGJ 602 B 1 HETATM 26 C C23 ZGJ . . . K 3 6.649 -26.752 39.555 1 79.57 ? C23 ZGJ 602 B 1 HETATM 27 C C22 ZGJ . . . K 3 6.322 -27.597 40.622 1 75.26 ? C22 ZGJ 602 B 1 HETATM 28 C C21 ZGJ . . . K 3 7.337 -28.188 41.372 1 75.72 ? C21 ZGJ 602 B 1 HETATM 29 C C20 ZGJ . . . K 3 8.675 -27.931 41.055 1 74.09 ? C20 ZGJ 602 B 1 HETATM 30 C C19 ZGJ . . . K 3 9.002 -27.085 39.988 1 74.64 ? C19 ZGJ 602 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #