data_7RAD
#
_model_server_result.job_id            bCvNP44DogS8Ab_wkToqiQ 
_model_server_result.datetime_utc      '2024-10-19 05:35:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rad 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":604}' 
#
_entry.id    7RAD 
#
_exptl.entry_id    7RAD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7RAD 
_cell.length_a            101.127 
_cell.length_b            101.127 
_cell.length_c            185.52 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RAD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 61.84 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 32 A THR 39 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc2 A O VAL 33 A VAL 40 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc3 A O ASP 102 A ASP 109 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc4 A OD1 ASP 102 A ASP 109 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc5 A O GLN 189 A GLN 196 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc6 E NA NA . A NA 603 1_555 Q O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc7 B OG1 THR 32 B THR 39 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc8 B O VAL 33 B VAL 40 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc9 B O ASP 102 B ASP 109 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc10 B OD1 ASP 102 B ASP 109 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc11 B O GLN 189 B GLN 196 1_555 L NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc12 L NA NA . B NA 603 1_555 R O HOH . B HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7RAD 
_atom_sites.fract_transf_matrix[1][1]    0.009889 
_atom_sites.fract_transf_matrix[1][2]    0.005709 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00539 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 601 4 NAD ZRF . 
D 3 ZGJ A 1 602 1 ZGJ dcz . 
E 4 NA A 1 603 1 NA NA . 
F 5 EDO A 1 604 2 EDO EDO . 
G 5 EDO A 1 605 4 EDO EDO . 
H 5 EDO A 1 606 5 EDO EDO . 
I 5 EDO A 1 607 6 EDO EDO . 
J 2 NAD B 1 601 3 NAD ZRF . 
K 3 ZGJ B 1 602 2 ZGJ dcz . 
L 4 NA B 1 603 2 NA NA . 
M 5 EDO B 1 604 1 EDO EDO . 
N 5 EDO B 1 605 3 EDO EDO . 
O 5 EDO B 1 606 7 EDO EDO . 
P 5 EDO B 1 607 8 EDO EDO . 
Q 6 HOH A 1 701 14 HOH HOH . 
Q 6 HOH A 2 702 13 HOH HOH . 
Q 6 HOH A 3 703 50 HOH HOH . 
Q 6 HOH A 4 704 24 HOH HOH . 
Q 6 HOH A 5 705 16 HOH HOH . 
Q 6 HOH A 6 706 26 HOH HOH . 
Q 6 HOH A 7 707 75 HOH HOH . 
Q 6 HOH A 8 708 23 HOH HOH . 
Q 6 HOH A 9 709 21 HOH HOH . 
Q 6 HOH A 10 710 57 HOH HOH . 
Q 6 HOH A 11 711 39 HOH HOH . 
Q 6 HOH A 12 712 70 HOH HOH . 
Q 6 HOH A 13 713 71 HOH HOH . 
Q 6 HOH A 14 714 51 HOH HOH . 
Q 6 HOH A 15 715 48 HOH HOH . 
Q 6 HOH A 16 716 66 HOH HOH . 
Q 6 HOH A 17 717 52 HOH HOH . 
Q 6 HOH A 18 718 6 HOH HOH . 
Q 6 HOH A 19 719 30 HOH HOH . 
Q 6 HOH A 20 720 12 HOH HOH . 
Q 6 HOH A 21 721 65 HOH HOH . 
Q 6 HOH A 22 722 63 HOH HOH . 
Q 6 HOH A 23 723 87 HOH HOH . 
Q 6 HOH A 24 724 53 HOH HOH . 
Q 6 HOH A 25 725 86 HOH HOH . 
Q 6 HOH A 26 726 27 HOH HOH . 
Q 6 HOH A 27 727 68 HOH HOH . 
Q 6 HOH A 28 728 90 HOH HOH . 
Q 6 HOH A 29 729 10 HOH HOH . 
Q 6 HOH A 30 730 5 HOH HOH . 
Q 6 HOH A 31 731 31 HOH HOH . 
Q 6 HOH A 32 732 74 HOH HOH . 
Q 6 HOH A 33 733 83 HOH HOH . 
Q 6 HOH A 34 734 29 HOH HOH . 
Q 6 HOH A 35 735 28 HOH HOH . 
Q 6 HOH A 36 736 77 HOH HOH . 
Q 6 HOH A 37 737 72 HOH HOH . 
Q 6 HOH A 38 738 9 HOH HOH . 
Q 6 HOH A 39 739 73 HOH HOH . 
Q 6 HOH A 40 740 20 HOH HOH . 
Q 6 HOH A 41 741 49 HOH HOH . 
Q 6 HOH A 42 742 8 HOH HOH . 
Q 6 HOH A 43 743 93 HOH HOH . 
Q 6 HOH A 44 744 7 HOH HOH . 
Q 6 HOH A 45 745 89 HOH HOH . 
Q 6 HOH A 46 746 94 HOH HOH . 
Q 6 HOH A 47 747 69 HOH HOH . 
Q 6 HOH A 48 748 42 HOH HOH . 
Q 6 HOH A 49 749 47 HOH HOH . 
Q 6 HOH A 50 750 91 HOH HOH . 
Q 6 HOH A 51 751 88 HOH HOH . 
Q 6 HOH A 52 752 54 HOH HOH . 
Q 6 HOH A 53 753 17 HOH HOH . 
Q 6 HOH A 54 754 25 HOH HOH . 
Q 6 HOH A 55 755 15 HOH HOH . 
Q 6 HOH A 56 756 32 HOH HOH . 
Q 6 HOH A 57 757 18 HOH HOH . 
Q 6 HOH A 58 758 64 HOH HOH . 
Q 6 HOH A 59 759 58 HOH HOH . 
Q 6 HOH A 60 760 19 HOH HOH . 
R 6 HOH B 1 701 55 HOH HOH . 
R 6 HOH B 2 702 40 HOH HOH . 
R 6 HOH B 3 703 76 HOH HOH . 
R 6 HOH B 4 704 1 HOH HOH . 
R 6 HOH B 5 705 81 HOH HOH . 
R 6 HOH B 6 706 60 HOH HOH . 
R 6 HOH B 7 707 41 HOH HOH . 
R 6 HOH B 8 708 2 HOH HOH . 
R 6 HOH B 9 709 36 HOH HOH . 
R 6 HOH B 10 710 95 HOH HOH . 
R 6 HOH B 11 711 59 HOH HOH . 
R 6 HOH B 12 712 38 HOH HOH . 
R 6 HOH B 13 713 56 HOH HOH . 
R 6 HOH B 14 714 84 HOH HOH . 
R 6 HOH B 15 715 45 HOH HOH . 
R 6 HOH B 16 716 85 HOH HOH . 
R 6 HOH B 17 717 33 HOH HOH . 
R 6 HOH B 18 718 11 HOH HOH . 
R 6 HOH B 19 719 61 HOH HOH . 
R 6 HOH B 20 720 3 HOH HOH . 
R 6 HOH B 21 721 34 HOH HOH . 
R 6 HOH B 22 722 67 HOH HOH . 
R 6 HOH B 23 723 62 HOH HOH . 
R 6 HOH B 24 724 78 HOH HOH . 
R 6 HOH B 25 725 37 HOH HOH . 
R 6 HOH B 26 726 4 HOH HOH . 
R 6 HOH B 27 727 80 HOH HOH . 
R 6 HOH B 28 728 79 HOH HOH . 
R 6 HOH B 29 729 35 HOH HOH . 
R 6 HOH B 30 730 92 HOH HOH . 
R 6 HOH B 31 731 46 HOH HOH . 
R 6 HOH B 32 732 44 HOH HOH . 
R 6 HOH B 33 733 82 HOH HOH . 
R 6 HOH B 34 734 43 HOH HOH . 
R 6 HOH B 35 735 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 5 31.342 -17.236 40.28 1 59.75 ? C1 EDO 604 B 1 
HETATM 2 O O1 EDO . . . M 5 30.434 -18.034 39.491 1 54.9 ? O1 EDO 604 B 1 
HETATM 3 C C2 EDO . . . M 5 32.663 -17.974 40.553 1 57.82 ? C2 EDO 604 B 1 
HETATM 4 O O2 EDO . . . M 5 33.843 -17.162 40.36 1 57.63 ? O2 EDO 604 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#