data_7RAF # _model_server_result.job_id 39jzv6YEpBobDTNUF-hZwg _model_server_result.datetime_utc '2024-10-11 21:48:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7raf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 7RAF # _exptl.entry_id 7RAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RAF _cell.length_a 69.099 _cell.length_b 69.099 _cell.length_c 145.258 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7RAF _atom_sites.fract_transf_matrix[1][1] 0.014472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 STR A 1 1001 1 STR STR . D 4 GOL A 1 1002 1 GOL GOL . E 4 GOL A 1 1003 2 GOL GOL . F 4 GOL A 1 1004 3 GOL GOL . G 5 HOH A 1 1101 150 HOH HOH . G 5 HOH A 2 1102 53 HOH HOH . G 5 HOH A 3 1103 149 HOH HOH . G 5 HOH A 4 1104 257 HOH HOH . G 5 HOH A 5 1105 67 HOH HOH . G 5 HOH A 6 1106 235 HOH HOH . G 5 HOH A 7 1107 242 HOH HOH . G 5 HOH A 8 1108 229 HOH HOH . G 5 HOH A 9 1109 178 HOH HOH . G 5 HOH A 10 1110 238 HOH HOH . G 5 HOH A 11 1111 90 HOH HOH . G 5 HOH A 12 1112 25 HOH HOH . G 5 HOH A 13 1113 131 HOH HOH . G 5 HOH A 14 1114 81 HOH HOH . G 5 HOH A 15 1115 77 HOH HOH . G 5 HOH A 16 1116 146 HOH HOH . G 5 HOH A 17 1117 79 HOH HOH . G 5 HOH A 18 1118 171 HOH HOH . G 5 HOH A 19 1119 162 HOH HOH . G 5 HOH A 20 1120 182 HOH HOH . G 5 HOH A 21 1121 161 HOH HOH . G 5 HOH A 22 1122 110 HOH HOH . G 5 HOH A 23 1123 113 HOH HOH . G 5 HOH A 24 1124 187 HOH HOH . G 5 HOH A 25 1125 82 HOH HOH . G 5 HOH A 26 1126 132 HOH HOH . G 5 HOH A 27 1127 34 HOH HOH . G 5 HOH A 28 1128 218 HOH HOH . G 5 HOH A 29 1129 94 HOH HOH . G 5 HOH A 30 1130 38 HOH HOH . G 5 HOH A 31 1131 19 HOH HOH . G 5 HOH A 32 1132 56 HOH HOH . G 5 HOH A 33 1133 194 HOH HOH . G 5 HOH A 34 1134 33 HOH HOH . G 5 HOH A 35 1135 138 HOH HOH . G 5 HOH A 36 1136 46 HOH HOH . G 5 HOH A 37 1137 124 HOH HOH . G 5 HOH A 38 1138 80 HOH HOH . G 5 HOH A 39 1139 97 HOH HOH . G 5 HOH A 40 1140 125 HOH HOH . G 5 HOH A 41 1141 116 HOH HOH . G 5 HOH A 42 1142 4 HOH HOH . G 5 HOH A 43 1143 17 HOH HOH . G 5 HOH A 44 1144 23 HOH HOH . G 5 HOH A 45 1145 142 HOH HOH . G 5 HOH A 46 1146 41 HOH HOH . G 5 HOH A 47 1147 76 HOH HOH . G 5 HOH A 48 1148 11 HOH HOH . G 5 HOH A 49 1149 63 HOH HOH . G 5 HOH A 50 1150 86 HOH HOH . G 5 HOH A 51 1151 28 HOH HOH . G 5 HOH A 52 1152 93 HOH HOH . G 5 HOH A 53 1153 89 HOH HOH . G 5 HOH A 54 1154 107 HOH HOH . G 5 HOH A 55 1155 85 HOH HOH . G 5 HOH A 56 1156 147 HOH HOH . G 5 HOH A 57 1157 87 HOH HOH . G 5 HOH A 58 1158 10 HOH HOH . G 5 HOH A 59 1159 51 HOH HOH . G 5 HOH A 60 1160 72 HOH HOH . G 5 HOH A 61 1161 71 HOH HOH . G 5 HOH A 62 1162 2 HOH HOH . G 5 HOH A 63 1163 157 HOH HOH . G 5 HOH A 64 1164 103 HOH HOH . G 5 HOH A 65 1165 30 HOH HOH . G 5 HOH A 66 1166 1 HOH HOH . G 5 HOH A 67 1167 16 HOH HOH . G 5 HOH A 68 1168 135 HOH HOH . G 5 HOH A 69 1169 192 HOH HOH . G 5 HOH A 70 1170 193 HOH HOH . G 5 HOH A 71 1171 153 HOH HOH . G 5 HOH A 72 1172 128 HOH HOH . G 5 HOH A 73 1173 64 HOH HOH . G 5 HOH A 74 1174 22 HOH HOH . G 5 HOH A 75 1175 39 HOH HOH . G 5 HOH A 76 1176 12 HOH HOH . G 5 HOH A 77 1177 14 HOH HOH . G 5 HOH A 78 1178 61 HOH HOH . G 5 HOH A 79 1179 13 HOH HOH . G 5 HOH A 80 1180 40 HOH HOH . G 5 HOH A 81 1181 200 HOH HOH . G 5 HOH A 82 1182 70 HOH HOH . G 5 HOH A 83 1183 24 HOH HOH . G 5 HOH A 84 1184 58 HOH HOH . G 5 HOH A 85 1185 134 HOH HOH . G 5 HOH A 86 1186 60 HOH HOH . G 5 HOH A 87 1187 31 HOH HOH . G 5 HOH A 88 1188 126 HOH HOH . G 5 HOH A 89 1189 185 HOH HOH . G 5 HOH A 90 1190 52 HOH HOH . G 5 HOH A 91 1191 9 HOH HOH . G 5 HOH A 92 1192 78 HOH HOH . G 5 HOH A 93 1193 27 HOH HOH . G 5 HOH A 94 1194 5 HOH HOH . G 5 HOH A 95 1195 18 HOH HOH . G 5 HOH A 96 1196 69 HOH HOH . G 5 HOH A 97 1197 191 HOH HOH . G 5 HOH A 98 1198 123 HOH HOH . G 5 HOH A 99 1199 156 HOH HOH . G 5 HOH A 100 1200 212 HOH HOH . G 5 HOH A 101 1201 112 HOH HOH . G 5 HOH A 102 1202 8 HOH HOH . G 5 HOH A 103 1203 37 HOH HOH . G 5 HOH A 104 1204 160 HOH HOH . G 5 HOH A 105 1205 49 HOH HOH . G 5 HOH A 106 1206 127 HOH HOH . G 5 HOH A 107 1207 201 HOH HOH . G 5 HOH A 108 1208 232 HOH HOH . G 5 HOH A 109 1209 144 HOH HOH . G 5 HOH A 110 1210 158 HOH HOH . G 5 HOH A 111 1211 26 HOH HOH . G 5 HOH A 112 1212 220 HOH HOH . G 5 HOH A 113 1213 148 HOH HOH . G 5 HOH A 114 1214 3 HOH HOH . G 5 HOH A 115 1215 136 HOH HOH . G 5 HOH A 116 1216 100 HOH HOH . G 5 HOH A 117 1217 62 HOH HOH . G 5 HOH A 118 1218 111 HOH HOH . G 5 HOH A 119 1219 74 HOH HOH . G 5 HOH A 120 1220 84 HOH HOH . G 5 HOH A 121 1221 251 HOH HOH . G 5 HOH A 122 1222 47 HOH HOH . G 5 HOH A 123 1223 65 HOH HOH . G 5 HOH A 124 1224 140 HOH HOH . G 5 HOH A 125 1225 29 HOH HOH . G 5 HOH A 126 1226 155 HOH HOH . G 5 HOH A 127 1227 45 HOH HOH . G 5 HOH A 128 1228 223 HOH HOH . G 5 HOH A 129 1229 164 HOH HOH . G 5 HOH A 130 1230 197 HOH HOH . G 5 HOH A 131 1231 55 HOH HOH . G 5 HOH A 132 1232 180 HOH HOH . G 5 HOH A 133 1233 196 HOH HOH . G 5 HOH A 134 1234 32 HOH HOH . G 5 HOH A 135 1235 129 HOH HOH . G 5 HOH A 136 1236 20 HOH HOH . G 5 HOH A 137 1237 66 HOH HOH . G 5 HOH A 138 1238 57 HOH HOH . G 5 HOH A 139 1239 43 HOH HOH . G 5 HOH A 140 1240 141 HOH HOH . G 5 HOH A 141 1241 145 HOH HOH . G 5 HOH A 142 1242 174 HOH HOH . G 5 HOH A 143 1243 35 HOH HOH . G 5 HOH A 144 1244 95 HOH HOH . G 5 HOH A 145 1245 42 HOH HOH . G 5 HOH A 146 1246 48 HOH HOH . G 5 HOH A 147 1247 221 HOH HOH . G 5 HOH A 148 1248 21 HOH HOH . G 5 HOH A 149 1249 50 HOH HOH . G 5 HOH A 150 1250 44 HOH HOH . G 5 HOH A 151 1251 36 HOH HOH . G 5 HOH A 152 1252 167 HOH HOH . G 5 HOH A 153 1253 166 HOH HOH . G 5 HOH A 154 1254 152 HOH HOH . G 5 HOH A 155 1255 168 HOH HOH . G 5 HOH A 156 1256 254 HOH HOH . G 5 HOH A 157 1257 143 HOH HOH . G 5 HOH A 158 1258 255 HOH HOH . G 5 HOH A 159 1259 59 HOH HOH . G 5 HOH A 160 1260 101 HOH HOH . G 5 HOH A 161 1261 241 HOH HOH . G 5 HOH A 162 1262 216 HOH HOH . G 5 HOH A 163 1263 133 HOH HOH . G 5 HOH A 164 1264 104 HOH HOH . G 5 HOH A 165 1265 68 HOH HOH . G 5 HOH A 166 1266 120 HOH HOH . G 5 HOH A 167 1267 233 HOH HOH . G 5 HOH A 168 1268 217 HOH HOH . G 5 HOH A 169 1269 54 HOH HOH . G 5 HOH A 170 1270 159 HOH HOH . G 5 HOH A 171 1271 205 HOH HOH . G 5 HOH A 172 1272 227 HOH HOH . G 5 HOH A 173 1273 15 HOH HOH . G 5 HOH A 174 1274 169 HOH HOH . G 5 HOH A 175 1275 75 HOH HOH . G 5 HOH A 176 1276 172 HOH HOH . G 5 HOH A 177 1277 198 HOH HOH . G 5 HOH A 178 1278 195 HOH HOH . G 5 HOH A 179 1279 219 HOH HOH . G 5 HOH A 180 1280 154 HOH HOH . G 5 HOH A 181 1281 245 HOH HOH . G 5 HOH A 182 1282 189 HOH HOH . G 5 HOH A 183 1283 88 HOH HOH . G 5 HOH A 184 1284 190 HOH HOH . G 5 HOH A 185 1285 83 HOH HOH . G 5 HOH A 186 1286 202 HOH HOH . G 5 HOH A 187 1287 117 HOH HOH . G 5 HOH A 188 1288 203 HOH HOH . G 5 HOH A 189 1289 258 HOH HOH . G 5 HOH A 190 1290 102 HOH HOH . G 5 HOH A 191 1291 247 HOH HOH . G 5 HOH A 192 1292 165 HOH HOH . G 5 HOH A 193 1293 239 HOH HOH . G 5 HOH A 194 1294 249 HOH HOH . G 5 HOH A 195 1295 225 HOH HOH . G 5 HOH A 196 1296 252 HOH HOH . G 5 HOH A 197 1297 186 HOH HOH . G 5 HOH A 198 1298 209 HOH HOH . G 5 HOH A 199 1299 204 HOH HOH . G 5 HOH A 200 1300 73 HOH HOH . G 5 HOH A 201 1301 91 HOH HOH . G 5 HOH A 202 1302 226 HOH HOH . G 5 HOH A 203 1303 119 HOH HOH . G 5 HOH A 204 1304 215 HOH HOH . G 5 HOH A 205 1305 130 HOH HOH . G 5 HOH A 206 1306 253 HOH HOH . G 5 HOH A 207 1307 179 HOH HOH . G 5 HOH A 208 1308 244 HOH HOH . G 5 HOH A 209 1309 214 HOH HOH . G 5 HOH A 210 1310 173 HOH HOH . G 5 HOH A 211 1311 207 HOH HOH . G 5 HOH A 212 1312 177 HOH HOH . G 5 HOH A 213 1313 210 HOH HOH . G 5 HOH A 214 1314 114 HOH HOH . G 5 HOH A 215 1315 230 HOH HOH . G 5 HOH A 216 1316 118 HOH HOH . G 5 HOH A 217 1317 139 HOH HOH . G 5 HOH A 218 1318 188 HOH HOH . G 5 HOH A 219 1319 246 HOH HOH . G 5 HOH A 220 1320 183 HOH HOH . G 5 HOH A 221 1321 211 HOH HOH . G 5 HOH A 222 1322 236 HOH HOH . G 5 HOH A 223 1323 184 HOH HOH . G 5 HOH A 224 1324 222 HOH HOH . G 5 HOH A 225 1325 237 HOH HOH . G 5 HOH A 226 1326 206 HOH HOH . G 5 HOH A 227 1327 151 HOH HOH . G 5 HOH A 228 1328 163 HOH HOH . H 5 HOH D 1 801 175 HOH HOH . H 5 HOH D 2 802 231 HOH HOH . H 5 HOH D 3 803 7 HOH HOH . H 5 HOH D 4 804 109 HOH HOH . H 5 HOH D 5 805 92 HOH HOH . H 5 HOH D 6 806 181 HOH HOH . H 5 HOH D 7 807 96 HOH HOH . H 5 HOH D 8 808 234 HOH HOH . H 5 HOH D 9 809 6 HOH HOH . H 5 HOH D 10 810 199 HOH HOH . H 5 HOH D 11 811 208 HOH HOH . H 5 HOH D 12 812 213 HOH HOH . H 5 HOH D 13 813 121 HOH HOH . H 5 HOH D 14 814 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 1.794 -30.83 18.954 1 22.26 ? C1 GOL 1002 A 1 HETATM 2 O O1 GOL . . . D 4 1.935 -32.099 19.592 1 26.96 ? O1 GOL 1002 A 1 HETATM 3 C C2 GOL . . . D 4 1.781 -31.079 17.457 1 36.93 ? C2 GOL 1002 A 1 HETATM 4 O O2 GOL . . . D 4 1.425 -32.288 16.968 1 26.95 ? O2 GOL 1002 A 1 HETATM 5 C C3 GOL . . . D 4 1.13 -29.918 16.786 1 25.84 ? C3 GOL 1002 A 1 HETATM 6 O O3 GOL . . . D 4 2.317 -29.497 16.249 1 27.14 ? O3 GOL 1002 A 1 HETATM 7 H H11 GOL . . . D 4 0.981 -30.367 19.213 1 26.71 ? H11 GOL 1002 A 1 HETATM 8 H H12 GOL . . . D 4 2.523 -30.232 19.183 1 26.71 ? H12 GOL 1002 A 1 HETATM 9 H HO1 GOL . . . D 4 1.648 -32.004 20.386 1 32.36 ? HO1 GOL 1002 A 1 HETATM 10 H H2 GOL . . . D 4 2.709 -31.038 17.177 1 44.32 ? H2 GOL 1002 A 1 HETATM 11 H H31 GOL . . . D 4 0.447 -30.202 16.159 1 31.01 ? H31 GOL 1002 A 1 HETATM 12 H H32 GOL . . . D 4 0.737 -29.305 17.427 1 31.01 ? H32 GOL 1002 A 1 HETATM 13 H HO3 GOL . . . D 4 2.125 -28.912 15.662 1 32.57 ? HO3 GOL 1002 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 13 #