data_7RAK # _model_server_result.job_id 4xPwFoVQdUoqUII3WBFNfw _model_server_result.datetime_utc '2024-10-18 16:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":601}' # _entry.id 7RAK # _exptl.entry_id 7RAK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7RAK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 ATP U 1 601 1 ATP ATP . R 2 ATP A 1 601 1 ATP ATP . S 2 ATP B 1 601 1 ATP ATP . T 2 ATP C 1 601 1 ATP ATP . U 2 ATP D 1 601 1 ATP ATP . V 2 ATP E 1 601 1 ATP ATP . W 2 ATP F 1 601 1 ATP ATP . X 2 ATP G 1 601 1 ATP ATP . Y 2 ATP H 1 601 1 ATP ATP . Z 2 ATP I 1 601 1 ATP ATP . AA 2 ATP J 1 601 1 ATP ATP . BA 2 ATP K 1 601 1 ATP ATP . CA 2 ATP L 1 601 1 ATP ATP . DA 2 ATP M 1 601 1 ATP ATP . EA 2 ATP N 1 601 1 ATP ATP . FA 2 ATP O 1 601 1 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 2 105.881 119.9 176.463 1 23.38 ? PG ATP 601 H 1 HETATM 2 O O1G ATP . . . Y 2 105.21 119.339 177.694 1 23.38 ? O1G ATP 601 H 1 HETATM 3 O O2G ATP . . . Y 2 107.048 120.813 176.752 1 23.38 ? O2G ATP 601 H 1 HETATM 4 O O3G ATP . . . Y 2 104.925 120.424 175.418 1 23.38 ? O3G ATP 601 H 1 HETATM 5 P PB ATP . . . Y 2 105.661 117.37 175.278 1 23.38 ? PB ATP 601 H 1 HETATM 6 O O1B ATP . . . Y 2 105.039 116.727 176.495 1 23.38 ? O1B ATP 601 H 1 HETATM 7 O O2B ATP . . . Y 2 104.785 117.847 174.144 1 23.38 ? O2B ATP 601 H 1 HETATM 8 O O3B ATP . . . Y 2 106.558 118.615 175.766 1 23.38 ? O3B ATP 601 H 1 HETATM 9 P PA ATP . . . Y 2 106.453 114.815 174.353 1 23.38 ? PA ATP 601 H 1 HETATM 10 O O1A ATP . . . Y 2 107.694 114.225 173.727 1 23.38 ? O1A ATP 601 H 1 HETATM 11 O O2A ATP . . . Y 2 105.871 114.161 175.584 1 23.38 ? O2A ATP 601 H 1 HETATM 12 O O3A ATP . . . Y 2 106.767 116.364 174.677 1 23.38 ? O3A ATP 601 H 1 HETATM 13 O O5' ATP . . . Y 2 105.312 114.856 173.215 1 23.38 ? O5' ATP 601 H 1 HETATM 14 C C5' ATP . . . Y 2 103.927 114.827 173.557 1 23.38 ? C5' ATP 601 H 1 HETATM 15 C C4' ATP . . . Y 2 103.091 114.841 172.284 1 23.38 ? C4' ATP 601 H 1 HETATM 16 O O4' ATP . . . Y 2 103.422 113.721 171.459 1 23.38 ? O4' ATP 601 H 1 HETATM 17 C C3' ATP . . . Y 2 101.603 114.749 172.585 1 23.38 ? C3' ATP 601 H 1 HETATM 18 O O3' ATP . . . Y 2 100.968 116.002 172.318 1 23.38 ? O3' ATP 601 H 1 HETATM 19 C C2' ATP . . . Y 2 101.058 113.68 171.657 1 23.38 ? C2' ATP 601 H 1 HETATM 20 O O2' ATP . . . Y 2 100.067 114.24 170.792 1 23.38 ? O2' ATP 601 H 1 HETATM 21 C C1' ATP . . . Y 2 102.246 113.191 170.843 1 23.38 ? C1' ATP 601 H 1 HETATM 22 N N9 ATP . . . Y 2 102.287 111.707 170.849 1 23.38 ? N9 ATP 601 H 1 HETATM 23 C C8 ATP . . . Y 2 102.903 110.941 171.769 1 23.38 ? C8 ATP 601 H 1 HETATM 24 N N7 ATP . . . Y 2 102.753 109.621 171.487 1 23.38 ? N7 ATP 601 H 1 HETATM 25 C C5 ATP . . . Y 2 102.024 109.53 170.36 1 23.38 ? C5 ATP 601 H 1 HETATM 26 C C6 ATP . . . Y 2 101.502 108.432 169.512 1 23.38 ? C6 ATP 601 H 1 HETATM 27 N N6 ATP . . . Y 2 101.736 107.134 169.823 1 23.38 ? N6 ATP 601 H 1 HETATM 28 N N1 ATP . . . Y 2 100.784 108.77 168.418 1 23.38 ? N1 ATP 601 H 1 HETATM 29 C C2 ATP . . . Y 2 100.544 110.055 168.098 1 23.38 ? C2 ATP 601 H 1 HETATM 30 N N3 ATP . . . Y 2 100.986 111.099 168.82 1 23.38 ? N3 ATP 601 H 1 HETATM 31 C C4 ATP . . . Y 2 101.719 110.907 169.943 1 23.38 ? C4 ATP 601 H 1 # _model_server_stats.io_time_ms 179 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #