data_7RB3 # _model_server_result.job_id 1222pll_slR5OEmmp8a0bw _model_server_result.datetime_utc '2025-01-02 23:58:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7RB3 # _exptl.entry_id 7RB3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 825.57 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RB3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RB3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C2 CMC . A CMC 401 1_555 D N MET . A MET 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? covale ? covale2 D C MET . A MET 402 1_555 E N LEU . A LEU 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C23 H38 N7 O18 P3 S' _chem_comp.formula_weight 825.57 _chem_comp.id CMC _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMC sing 70 n y N1A C6A CMC doub 71 n y C2A N3A CMC doub 72 n y C2A H2A CMC sing 73 n n N3A C4A CMC sing 74 n y C4A C5A CMC doub 75 n y C4A N9A CMC sing 76 n y C5A C6A CMC sing 77 n y C5A N7A CMC sing 78 n y C6A N6A CMC sing 79 n n N6A H61A CMC sing 80 n n N6A H62A CMC sing 81 n n N7A C8A CMC doub 82 n y C8A N9A CMC sing 83 n y C8A H8A CMC sing 84 n n N9A C1B CMC sing 85 n n C1B C2B CMC sing 86 n n C1B O4B CMC sing 87 n n C1B H1B CMC sing 88 n n C2B O2B CMC sing 89 n n C2B C3B CMC sing 90 n n C2B H2B CMC sing 91 n n O2B HO2A CMC sing 92 n n C3B O3B CMC sing 93 n n C3B C4B CMC sing 94 n n C3B H3B CMC sing 95 n n O3B P3B CMC sing 96 n n P3B O7A CMC doub 97 n n P3B O8A CMC sing 98 n n P3B O9A CMC sing 99 n n O8A HOA8 CMC sing 100 n n O9A HOA9 CMC sing 101 n n C4B O4B CMC sing 102 n n C4B C5B CMC sing 103 n n C4B H4B CMC sing 104 n n C5B O5B CMC sing 105 n n C5B H51A CMC sing 106 n n C5B H52A CMC sing 107 n n O5B P1A CMC sing 108 n n P1A O1A CMC doub 109 n n P1A O2A CMC sing 110 n n P1A O3A CMC sing 111 n n O2A HOA2 CMC sing 112 n n O3A P2A CMC sing 113 n n P2A O4A CMC doub 114 n n P2A O5A CMC sing 115 n n P2A O6A CMC sing 116 n n O5A HOA5 CMC sing 117 n n O6A CCP CMC sing 118 n n CBP CCP CMC sing 119 n n CBP CDP CMC sing 120 n n CBP CEP CMC sing 121 n n CBP CAP CMC sing 122 n n CCP H121 CMC sing 123 n n CCP H122 CMC sing 124 n n CDP H131 CMC sing 125 n n CDP H132 CMC sing 126 n n CDP H133 CMC sing 127 n n CEP H141 CMC sing 128 n n CEP H142 CMC sing 129 n n CEP H143 CMC sing 130 n n CAP OAP CMC sing 131 n n CAP C9P CMC sing 132 n n CAP H10 CMC sing 133 n n OAP HO1 CMC sing 134 n n C9P O9P CMC doub 135 n n C9P N8P CMC sing 136 n n N8P C7P CMC sing 137 n n N8P HN8 CMC sing 138 n n C7P C6P CMC sing 139 n n C7P H71 CMC sing 140 n n C7P H72 CMC sing 141 n n C6P C5P CMC sing 142 n n C6P H61 CMC sing 143 n n C6P H62 CMC sing 144 n n C5P O5P CMC doub 145 n n C5P N4P CMC sing 146 n n N4P C3P CMC sing 147 n n N4P HN4 CMC sing 148 n n C3P C2P CMC sing 149 n n C3P H31 CMC sing 150 n n C3P H32 CMC sing 151 n n C2P S1P CMC sing 152 n n C2P H21 CMC sing 153 n n C2P H22 CMC sing 154 n n S1P C1 CMC sing 155 n n C1 C2 CMC sing 156 n n C1 H11 CMC sing 157 n n C1 H12 CMC sing 158 n n C2 O21 CMC doub 159 n n C2 O22 CMC sing 160 n n O22 HO22 CMC sing 161 n n # _atom_sites.entry_id 7RB3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CMC A 1 401 401 CMC CMC . D 4 MET A 1 402 402 MET MET . E 5 LEU A 1 403 403 LEU LEU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A CMC . . . C 3 -13.571 24.872 -6.473 1 90.81 ? N1A CMC 401 A 1 HETATM 2 C C2A CMC . . . C 3 -13.529 24.299 -7.681 1 90.81 ? C2A CMC 401 A 1 HETATM 3 N N3A CMC . . . C 3 -12.601 24.393 -8.62 1 90.81 ? N3A CMC 401 A 1 HETATM 4 C C4A CMC . . . C 3 -11.612 25.191 -8.203 1 90.81 ? C4A CMC 401 A 1 HETATM 5 C C5A CMC . . . C 3 -11.505 25.839 -7 1 90.81 ? C5A CMC 401 A 1 HETATM 6 C C6A CMC . . . C 3 -12.544 25.653 -6.091 1 90.81 ? C6A CMC 401 A 1 HETATM 7 N N6A CMC . . . C 3 -12.595 26.241 -4.91 1 90.81 ? N6A CMC 401 A 1 HETATM 8 N N7A CMC . . . C 3 -10.329 26.564 -6.948 1 90.81 ? N7A CMC 401 A 1 HETATM 9 C C8A CMC . . . C 3 -9.767 26.343 -8.111 1 90.81 ? C8A CMC 401 A 1 HETATM 10 N N9A CMC . . . C 3 -10.485 25.513 -8.888 1 90.81 ? N9A CMC 401 A 1 HETATM 11 C C1B CMC . . . C 3 -10.224 25.158 -10.188 1 90.81 ? C1B CMC 401 A 1 HETATM 12 C C2B CMC . . . C 3 -10.334 26.482 -10.917 1 90.81 ? C2B CMC 401 A 1 HETATM 13 O O2B CMC . . . C 3 -11.628 26.801 -11.365 1 90.81 ? O2B CMC 401 A 1 HETATM 14 C C3B CMC . . . C 3 -9.283 26.304 -11.983 1 90.81 ? C3B CMC 401 A 1 HETATM 15 O O3B CMC . . . C 3 -9.823 25.427 -12.93 1 90.81 ? O3B CMC 401 A 1 HETATM 16 P P3B CMC . . . C 3 -10.675 26.345 -13.945 1 90.81 ? P3B CMC 401 A 1 HETATM 17 O O7A CMC . . . C 3 -9.694 26.829 -14.968 1 90.81 ? O7A CMC 401 A 1 HETATM 18 O O8A CMC . . . C 3 -11.751 25.478 -14.579 1 90.81 -1 O8A CMC 401 A 1 HETATM 19 O O9A CMC . . . C 3 -11.26 27.524 -13.216 1 90.81 ? O9A CMC 401 A 1 HETATM 20 C C4B CMC . . . C 3 -8.184 25.716 -11.127 1 90.81 ? C4B CMC 401 A 1 HETATM 21 O O4B CMC . . . C 3 -8.877 24.811 -10.239 1 90.81 ? O4B CMC 401 A 1 HETATM 22 C C5B CMC . . . C 3 -7.506 26.724 -10.235 1 90.81 ? C5B CMC 401 A 1 HETATM 23 O O5B CMC . . . C 3 -6.99 27.822 -10.995 1 90.81 ? O5B CMC 401 A 1 HETATM 24 P P1A CMC . . . C 3 -6.701 29.102 -10.14 1 90.81 ? P1A CMC 401 A 1 HETATM 25 O O1A CMC . . . C 3 -5.382 29.655 -10.455 1 90.81 -1 O1A CMC 401 A 1 HETATM 26 O O2A CMC . . . C 3 -7.93 29.889 -10.063 1 90.81 ? O2A CMC 401 A 1 HETATM 27 O O3A CMC . . . C 3 -6.398 28.58 -8.722 1 90.81 ? O3A CMC 401 A 1 HETATM 28 P P2A CMC . . . C 3 -6.105 29.818 -7.821 1 90.81 ? P2A CMC 401 A 1 HETATM 29 O O4A CMC . . . C 3 -7.334 30.615 -7.695 1 90.81 -1 O4A CMC 401 A 1 HETATM 30 O O5A CMC . . . C 3 -4.833 30.48 -8.119 1 90.81 ? O5A CMC 401 A 1 HETATM 31 O O6A CMC . . . C 3 -5.946 29.162 -6.429 1 90.81 ? O6A CMC 401 A 1 HETATM 32 C CBP CMC . . . C 3 -4.479 27.784 -5.388 1 90.81 ? CBP CMC 401 A 1 HETATM 33 C CCP CMC . . . C 3 -4.665 29.204 -5.831 1 90.81 ? CCP CMC 401 A 1 HETATM 34 C CDP CMC . . . C 3 -3.1 27.623 -4.779 1 90.81 ? CDP CMC 401 A 1 HETATM 35 C CEP CMC . . . C 3 -4.695 26.844 -6.567 1 90.81 ? CEP CMC 401 A 1 HETATM 36 C CAP CMC . . . C 3 -5.555 27.558 -4.37 1 90.81 ? CAP CMC 401 A 1 HETATM 37 O OAP CMC . . . C 3 -5.616 26.191 -4.196 1 90.81 ? OAP CMC 401 A 1 HETATM 38 C C9P CMC . . . C 3 -5.062 28.204 -3.117 1 90.81 ? C9P CMC 401 A 1 HETATM 39 O O9P CMC . . . C 3 -5.556 29.255 -2.743 1 90.81 ? O9P CMC 401 A 1 HETATM 40 N N8P CMC . . . C 3 -4.285 27.488 -2.342 1 90.81 ? N8P CMC 401 A 1 HETATM 41 C C7P CMC . . . C 3 -2.975 27.893 -1.88 1 90.81 ? C7P CMC 401 A 1 HETATM 42 C C6P CMC . . . C 3 -2.671 27.302 -0.57 1 90.81 ? C6P CMC 401 A 1 HETATM 43 C C5P CMC . . . C 3 -3.237 25.912 -0.566 1 90.81 ? C5P CMC 401 A 1 HETATM 44 O O5P CMC . . . C 3 -4.253 25.656 0.041 1 90.81 ? O5P CMC 401 A 1 HETATM 45 N N4P CMC . . . C 3 -2.623 25.037 -1.334 1 90.81 ? N4P CMC 401 A 1 HETATM 46 C C3P CMC . . . C 3 -1.313 25.341 -1.85 1 90.81 ? C3P CMC 401 A 1 HETATM 47 C C2P CMC . . . C 3 -0.925 24.397 -2.967 1 90.81 ? C2P CMC 401 A 1 HETATM 48 S S1P CMC . . . C 3 -0.421 22.834 -2.25 1 90.81 ? S1P CMC 401 A 1 HETATM 49 C C1 CMC . . . C 3 1.382 22.795 -2.504 1 90.81 ? C1 CMC 401 A 1 HETATM 50 C C2 CMC . . . C 3 2.509 22.556 -1.442 1 90.81 ? C2 CMC 401 A 1 HETATM 51 O O21 CMC . . . C 3 2.639 23.817 -1.65 1 90.81 ? O21 CMC 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 51 #