data_7RB7 # _model_server_result.job_id SFK-4nrwjXBRvo_8ww7t8w _model_server_result.datetime_utc '2024-11-05 08:37:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7RB7 # _exptl.entry_id 7RB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,4-DIHYDROXY-N,N,N-TRIMETHYLPENTAN-1-AMINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7RB7 _cell.length_a 125.462 _cell.length_b 125.462 _cell.length_c 130.948 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 125.462 0 43.649333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A OG SER 206 A SER 203 1_555 C C5 NWA . A NWA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale2 B OG SER 206 B SER 203 1_555 E C5 NWA . B NWA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? # _chem_comp.formula 'C8 H20 N O2 1' _chem_comp.formula_weight 162.25 _chem_comp.id NWA _chem_comp.mon_nstd_flag . _chem_comp.name 4,4-DIHYDROXY-N,N,N-TRIMETHYLPENTAN-1-AMINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NWA sing 271 n n N1 C8 NWA sing 272 n n N1 C9 NWA sing 273 n n N1 C10 NWA sing 274 n n C2 C3 NWA sing 275 n n C2 H2C1 NWA sing 276 n n C2 H2C2 NWA sing 277 n n C3 C4 NWA sing 278 n n C3 H3C1 NWA sing 279 n n C3 H3C2 NWA sing 280 n n C5 O7 NWA sing 281 n n C5 O8 NWA sing 282 n n C5 C6 NWA sing 283 n n C5 C4 NWA sing 284 n n O7 H7 NWA sing 285 n n O8 H8 NWA sing 286 n n C6 H6C1 NWA sing 287 n n C6 H6C2 NWA sing 288 n n C6 H6C3 NWA sing 289 n n C8 H8C1 NWA sing 290 n n C8 H8C2 NWA sing 291 n n C8 H8C3 NWA sing 292 n n C9 H9C1 NWA sing 293 n n C9 H9C2 NWA sing 294 n n C9 H9C3 NWA sing 295 n n C10 H101 NWA sing 296 n n C10 H102 NWA sing 297 n n C10 H103 NWA sing 298 n n C4 H4C1 NWA sing 299 n n C4 H4C2 NWA sing 300 n n # _atom_sites.entry_id 7RB7 _atom_sites.fract_transf_matrix[1][1] 0.007971 _atom_sites.fract_transf_matrix[1][2] 0.004602 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NWA A 1 601 601 NWA NWA . D 3 3VI A 1 602 2 3VI MMB . E 2 NWA B 1 601 601 NWA NWA . F 3 3VI B 1 602 1 3VI MMB . G 4 HOH A 1 701 96 HOH HOH . G 4 HOH A 2 702 77 HOH HOH . G 4 HOH A 3 703 90 HOH HOH . G 4 HOH A 4 704 32 HOH HOH . G 4 HOH A 5 705 69 HOH HOH . G 4 HOH A 6 706 51 HOH HOH . G 4 HOH A 7 707 163 HOH HOH . G 4 HOH A 8 708 141 HOH HOH . G 4 HOH A 9 709 15 HOH HOH . G 4 HOH A 10 710 2 HOH HOH . G 4 HOH A 11 711 61 HOH HOH . G 4 HOH A 12 712 19 HOH HOH . G 4 HOH A 13 713 54 HOH HOH . G 4 HOH A 14 714 83 HOH HOH . G 4 HOH A 15 715 13 HOH HOH . G 4 HOH A 16 716 65 HOH HOH . G 4 HOH A 17 717 3 HOH HOH . G 4 HOH A 18 718 72 HOH HOH . G 4 HOH A 19 719 131 HOH HOH . G 4 HOH A 20 720 24 HOH HOH . G 4 HOH A 21 721 44 HOH HOH . G 4 HOH A 22 722 161 HOH HOH . G 4 HOH A 23 723 20 HOH HOH . G 4 HOH A 24 724 84 HOH HOH . G 4 HOH A 25 725 27 HOH HOH . G 4 HOH A 26 726 164 HOH HOH . G 4 HOH A 27 727 17 HOH HOH . G 4 HOH A 28 728 11 HOH HOH . G 4 HOH A 29 729 26 HOH HOH . G 4 HOH A 30 730 56 HOH HOH . G 4 HOH A 31 731 7 HOH HOH . G 4 HOH A 32 732 43 HOH HOH . G 4 HOH A 33 733 162 HOH HOH . G 4 HOH A 34 734 129 HOH HOH . G 4 HOH A 35 735 40 HOH HOH . G 4 HOH A 36 736 80 HOH HOH . G 4 HOH A 37 737 64 HOH HOH . G 4 HOH A 38 738 100 HOH HOH . G 4 HOH A 39 739 71 HOH HOH . G 4 HOH A 40 740 60 HOH HOH . G 4 HOH A 41 741 47 HOH HOH . G 4 HOH A 42 742 82 HOH HOH . G 4 HOH A 43 743 28 HOH HOH . G 4 HOH A 44 744 91 HOH HOH . G 4 HOH A 45 745 102 HOH HOH . G 4 HOH A 46 746 21 HOH HOH . G 4 HOH A 47 747 52 HOH HOH . G 4 HOH A 48 748 87 HOH HOH . G 4 HOH A 49 749 62 HOH HOH . G 4 HOH A 50 750 36 HOH HOH . G 4 HOH A 51 751 78 HOH HOH . G 4 HOH A 52 752 55 HOH HOH . G 4 HOH A 53 753 127 HOH HOH . G 4 HOH A 54 754 6 HOH HOH . G 4 HOH A 55 755 22 HOH HOH . G 4 HOH A 56 756 124 HOH HOH . G 4 HOH A 57 757 159 HOH HOH . G 4 HOH A 58 758 59 HOH HOH . G 4 HOH A 59 759 88 HOH HOH . G 4 HOH A 60 760 138 HOH HOH . G 4 HOH A 61 761 79 HOH HOH . G 4 HOH A 62 762 140 HOH HOH . G 4 HOH A 63 763 109 HOH HOH . G 4 HOH A 64 764 137 HOH HOH . G 4 HOH A 65 765 110 HOH HOH . G 4 HOH A 66 766 81 HOH HOH . G 4 HOH A 67 767 104 HOH HOH . G 4 HOH A 68 768 42 HOH HOH . G 4 HOH A 69 769 125 HOH HOH . G 4 HOH A 70 770 143 HOH HOH . G 4 HOH A 71 771 49 HOH HOH . G 4 HOH A 72 772 160 HOH HOH . G 4 HOH A 73 773 142 HOH HOH . G 4 HOH A 74 774 95 HOH HOH . G 4 HOH A 75 775 114 HOH HOH . G 4 HOH A 76 776 73 HOH HOH . G 4 HOH A 77 777 98 HOH HOH . G 4 HOH A 78 778 134 HOH HOH . G 4 HOH A 79 779 139 HOH HOH . G 4 HOH A 80 780 106 HOH HOH . H 4 HOH B 1 701 70 HOH HOH . H 4 HOH B 2 702 29 HOH HOH . H 4 HOH B 3 703 154 HOH HOH . H 4 HOH B 4 704 5 HOH HOH . H 4 HOH B 5 705 156 HOH HOH . H 4 HOH B 6 706 46 HOH HOH . H 4 HOH B 7 707 92 HOH HOH . H 4 HOH B 8 708 148 HOH HOH . H 4 HOH B 9 709 48 HOH HOH . H 4 HOH B 10 710 35 HOH HOH . H 4 HOH B 11 711 158 HOH HOH . H 4 HOH B 12 712 50 HOH HOH . H 4 HOH B 13 713 101 HOH HOH . H 4 HOH B 14 714 23 HOH HOH . H 4 HOH B 15 715 12 HOH HOH . H 4 HOH B 16 716 99 HOH HOH . H 4 HOH B 17 717 33 HOH HOH . H 4 HOH B 18 718 38 HOH HOH . H 4 HOH B 19 719 157 HOH HOH . H 4 HOH B 20 720 30 HOH HOH . H 4 HOH B 21 721 8 HOH HOH . H 4 HOH B 22 722 85 HOH HOH . H 4 HOH B 23 723 4 HOH HOH . H 4 HOH B 24 724 58 HOH HOH . H 4 HOH B 25 725 37 HOH HOH . H 4 HOH B 26 726 34 HOH HOH . H 4 HOH B 27 727 57 HOH HOH . H 4 HOH B 28 728 41 HOH HOH . H 4 HOH B 29 729 1 HOH HOH . H 4 HOH B 30 730 93 HOH HOH . H 4 HOH B 31 731 16 HOH HOH . H 4 HOH B 32 732 86 HOH HOH . H 4 HOH B 33 733 66 HOH HOH . H 4 HOH B 34 734 123 HOH HOH . H 4 HOH B 35 735 75 HOH HOH . H 4 HOH B 36 736 31 HOH HOH . H 4 HOH B 37 737 153 HOH HOH . H 4 HOH B 38 738 9 HOH HOH . H 4 HOH B 39 739 76 HOH HOH . H 4 HOH B 40 740 89 HOH HOH . H 4 HOH B 41 741 155 HOH HOH . H 4 HOH B 42 742 18 HOH HOH . H 4 HOH B 43 743 119 HOH HOH . H 4 HOH B 44 744 150 HOH HOH . H 4 HOH B 45 745 10 HOH HOH . H 4 HOH B 46 746 25 HOH HOH . H 4 HOH B 47 747 146 HOH HOH . H 4 HOH B 48 748 39 HOH HOH . H 4 HOH B 49 749 132 HOH HOH . H 4 HOH B 50 750 14 HOH HOH . H 4 HOH B 51 751 53 HOH HOH . H 4 HOH B 52 752 117 HOH HOH . H 4 HOH B 53 753 74 HOH HOH . H 4 HOH B 54 754 103 HOH HOH . H 4 HOH B 55 755 130 HOH HOH . H 4 HOH B 56 756 111 HOH HOH . H 4 HOH B 57 757 151 HOH HOH . H 4 HOH B 58 758 136 HOH HOH . H 4 HOH B 59 759 105 HOH HOH . H 4 HOH B 60 760 147 HOH HOH . H 4 HOH B 61 761 45 HOH HOH . H 4 HOH B 62 762 144 HOH HOH . H 4 HOH B 63 763 133 HOH HOH . H 4 HOH B 64 764 94 HOH HOH . H 4 HOH B 65 765 121 HOH HOH . H 4 HOH B 66 766 165 HOH HOH . H 4 HOH B 67 767 97 HOH HOH . H 4 HOH B 68 768 122 HOH HOH . H 4 HOH B 69 769 118 HOH HOH . H 4 HOH B 70 770 68 HOH HOH . H 4 HOH B 71 771 126 HOH HOH . H 4 HOH B 72 772 152 HOH HOH . H 4 HOH B 73 773 67 HOH HOH . H 4 HOH B 74 774 107 HOH HOH . H 4 HOH B 75 775 145 HOH HOH . H 4 HOH B 76 776 113 HOH HOH . H 4 HOH B 77 777 112 HOH HOH . H 4 HOH B 78 778 115 HOH HOH . H 4 HOH B 79 779 116 HOH HOH . H 4 HOH B 80 780 128 HOH HOH . H 4 HOH B 81 781 63 HOH HOH . H 4 HOH B 82 782 120 HOH HOH . H 4 HOH B 83 783 149 HOH HOH . H 4 HOH B 84 784 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NWA . . . E 2 100.829 48.809 -17.119 1 34.1 ? N1 NWA 601 B 1 HETATM 2 C C2 NWA . . . E 2 99.383 48.671 -17.158 1 56.3 ? C2 NWA 601 B 1 HETATM 3 C C3 NWA . . . E 2 98.872 48.853 -18.587 1 42.91 ? C3 NWA 601 B 1 HETATM 4 C C5 NWA . . . E 2 96.903 48.544 -20.107 1 42.25 ? C5 NWA 601 B 1 HETATM 5 O O7 NWA . . . E 2 97.201 49.847 -20.528 1 42.43 ? O7 NWA 601 B 1 HETATM 6 C C6 NWA . . . E 2 95.385 48.373 -20.077 1 28.28 ? C6 NWA 601 B 1 HETATM 7 C C8 NWA . . . E 2 101.291 48.583 -15.761 1 36.62 ? C8 NWA 601 B 1 HETATM 8 C C9 NWA . . . E 2 101.211 50.145 -17.54 1 36.49 ? C9 NWA 601 B 1 HETATM 9 C C10 NWA . . . E 2 101.439 47.832 -18.005 1 30.14 ? C10 NWA 601 B 1 HETATM 10 C C4 NWA . . . E 2 97.438 48.334 -18.69 1 34.15 ? C4 NWA 601 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #