data_7RB8 # _model_server_result.job_id 2FgXW7WMJoxwFGCbM-kn3A _model_server_result.datetime_utc '2025-08-31 23:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7rb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7RB8 # _exptl.entry_id 7RB8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7RB8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7RB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 70 A GLU 72 1_555 A N HIC 71 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C HIC 71 A HIC 73 1_555 A N GLY 72 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 C C GLU 70 B GLU 72 1_555 C N HIC 71 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C HIC 71 B HIC 73 1_555 C N GLY 72 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 D C GLU 70 C GLU 72 1_555 D N HIC 71 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C HIC 71 C HIC 73 1_555 D N GLY 72 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 E O3B ADP . A ADP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 G O1B ADP . D ADP 1901 1_555 H MG MG . D MG 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc3 I O3B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 K O3B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7RB8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 401 376 ADP ADP . F 4 MG A 1 402 377 MG MG . G 3 ADP D 1 1901 1890 ADP ADP . H 4 MG D 1 1902 1891 MG MG . I 3 ADP B 1 401 376 ADP ADP . J 4 MG B 1 402 377 MG MG . K 3 ADP C 1 401 376 ADP ADP . L 4 MG C 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 3 279.314 256.028 323.197 1 43.32 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . E 3 278.804 254.804 322.481 1 43.32 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . E 3 278.333 257.17 323.234 1 43.32 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . E 3 279.984 255.737 324.517 1 43.32 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . E 3 281.305 257.91 322.61 1 43.32 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . E 3 282.775 257.639 322.421 1 43.32 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . E 3 280.811 258.403 323.945 1 43.32 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . E 3 280.511 256.554 322.26 1 43.32 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . E 3 280.846 258.949 321.47 1 43.32 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . E 3 279.512 258.958 320.975 1 43.32 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . E 3 279.162 260.346 320.458 1 43.32 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . E 3 280.161 261.291 320.831 1 43.32 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . E 3 279.068 260.394 318.945 1 43.32 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . E 3 277.695 260.409 318.548 1 43.32 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . E 3 279.733 261.691 318.54 1 43.32 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . E 3 278.753 262.57 317.993 1 43.32 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . E 3 280.276 262.292 319.82 1 43.32 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . E 3 281.695 262.677 319.652 1 43.32 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . E 3 282.731 261.827 319.549 1 43.32 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . E 3 283.902 262.496 319.409 1 43.32 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . E 3 283.614 263.809 319.421 1 43.32 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . E 3 284.386 265.066 319.316 1 43.32 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . E 3 285.731 265.048 319.165 1 43.32 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . E 3 283.703 266.227 319.374 1 43.32 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . E 3 282.368 266.253 319.523 1 43.32 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . E 3 281.606 265.152 319.625 1 43.32 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . E 3 282.161 263.922 319.58 1 43.32 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #