data_7RB8
#
_model_server_result.job_id            VecBWe6vUjSG0aS9jXlqEA 
_model_server_result.datetime_utc      '2025-08-31 23:54:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7rb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    7RB8 
#
_exptl.entry_id    7RB8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7RB8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7RB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 70 A GLU 72 1_555 A N HIC 71 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C HIC 71 A HIC 73 1_555 A N GLY 72 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 C C GLU 70 B GLU 72 1_555 C N HIC 71 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 C C HIC 71 B HIC 73 1_555 C N GLY 72 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 D C GLU 70 C GLU 72 1_555 D N HIC 71 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 D C HIC 71 C HIC 73 1_555 D N GLY 72 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 E O3B ADP . A ADP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 G O1B ADP . D ADP 1901 1_555 H MG MG . D MG 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc3 I O3B ADP . B ADP 401 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc4 K O3B ADP . C ADP 401 1_555 L MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7RB8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ADP A 1 401 376 ADP ADP . 
F 4 MG A 1 402 377 MG MG . 
G 3 ADP D 1 1901 1890 ADP ADP . 
H 4 MG D 1 1902 1891 MG MG . 
I 3 ADP B 1 401 376 ADP ADP . 
J 4 MG B 1 402 377 MG MG . 
K 3 ADP C 1 401 376 ADP ADP . 
L 4 MG C 1 402 377 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 3 250.348 274.862 295.284 1 43.32 ? PB ADP 401 C 1 
HETATM 2 O O1B ADP . . . K 3 251.139 275.926 294.567 1 43.32 ? O1B ADP 401 C 1 
HETATM 3 O O2B ADP . . . K 3 251.024 273.517 295.322 1 43.32 ? O2B ADP 401 C 1 
HETATM 4 O O3B ADP . . . K 3 249.768 275.307 296.604 1 43.32 ? O3B ADP 401 C 1 
HETATM 5 P PA ADP . . . K 3 247.962 273.516 294.698 1 43.32 ? PA ADP 401 C 1 
HETATM 6 O O1A ADP . . . K 3 246.601 274.134 294.509 1 43.32 ? O1A ADP 401 C 1 
HETATM 7 O O2A ADP . . . K 3 248.322 272.919 296.033 1 43.32 ? O2A ADP 401 C 1 
HETATM 8 O O3A ADP . . . K 3 249.06 274.64 294.347 1 43.32 ? O3A ADP 401 C 1 
HETATM 9 O O5' ADP . . . K 3 248.156 272.397 293.558 1 43.32 ? O5' ADP 401 C 1 
HETATM 10 C C5' ADP . . . K 3 249.448 272.066 293.063 1 43.32 ? C5' ADP 401 C 1 
HETATM 11 C C4' ADP . . . K 3 249.453 270.634 292.547 1 43.32 ? C4' ADP 401 C 1 
HETATM 12 O O4' ADP . . . K 3 248.255 269.958 292.92 1 43.32 ? O4' ADP 401 C 1 
HETATM 13 C C3' ADP . . . K 3 249.532 270.564 291.034 1 43.32 ? C3' ADP 401 C 1 
HETATM 14 O O3' ADP . . . K 3 250.861 270.218 290.637 1 43.32 ? O3' ADP 401 C 1 
HETATM 15 C C2' ADP . . . K 3 248.574 269.466 290.629 1 43.32 ? C2' ADP 401 C 1 
HETATM 16 O O2' ADP . . . K 3 249.313 268.376 290.083 1 43.32 ? O2' ADP 401 C 1 
HETATM 17 C C1' ADP . . . K 3 247.902 269.014 291.91 1 43.32 ? C1' ADP 401 C 1 
HETATM 18 N N9 ADP . . . K 3 246.432 268.983 291.742 1 43.32 ? N9 ADP 401 C 1 
HETATM 19 C C8 ADP . . . K 3 245.632 270.058 291.638 1 43.32 ? C8 ADP 401 C 1 
HETATM 20 N N7 ADP . . . K 3 244.334 269.692 291.499 1 43.32 ? N7 ADP 401 C 1 
HETATM 21 C C5 ADP . . . K 3 244.296 268.348 291.511 1 43.32 ? C5 ADP 401 C 1 
HETATM 22 C C6 ADP . . . K 3 243.244 267.315 291.407 1 43.32 ? C6 ADP 401 C 1 
HETATM 23 N N6 ADP . . . K 3 241.943 267.657 291.256 1 43.32 ? N6 ADP 401 C 1 
HETATM 24 N N1 ADP . . . K 3 243.626 266.023 291.465 1 43.32 ? N1 ADP 401 C 1 
HETATM 25 C C2 ADP . . . K 3 244.915 265.676 291.614 1 43.32 ? C2 ADP 401 C 1 
HETATM 26 N N3 ADP . . . K 3 245.921 266.56 291.716 1 43.32 ? N3 ADP 401 C 1 
HETATM 27 C C4 ADP . . . K 3 245.679 267.888 291.67 1 43.32 ? C4 ADP 401 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           451 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#